Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00274 * 2 1 4 4 H 1.48504 * 109.46768 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46958 * 300.00018 * 3 2 1 6 6 H 1.48493 * 109.46890 * 60.00010 * 3 2 1 7 7 C 1.37882 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00410 * 180.27480 * 7 2 1 9 9 C 1.50704 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.53937 * 113.73129 * 278.76410 * 9 7 2 11 11 N 1.48194 * 86.09708 * 221.95818 * 10 9 7 12 12 C 1.46904 * 111.06706 * 137.52166 * 11 10 9 13 13 C 1.50705 * 109.46858 * 76.68019 * 12 11 10 14 14 C 1.38339 * 119.99499 * 263.05929 * 13 12 11 15 15 Cl 1.73599 * 120.00300 * 0.02562 * 14 13 12 16 16 C 1.38343 * 119.99488 * 179.77014 * 14 13 12 17 17 C 1.38333 * 119.99944 * 0.50802 * 16 14 13 18 18 Cl 1.73601 * 119.99897 * 179.72875 * 17 16 14 19 19 C 1.38340 * 120.00497 * 359.74702 * 17 16 14 20 20 C 1.38333 * 120.00070 * 83.33747 * 13 12 11 21 21 Cl 1.73596 * 120.00148 * 0.02562 * 20 13 12 22 22 C 1.47956 * 90.80273 * 24.60138 * 11 10 9 23 23 H 0.97007 * 119.99973 * 0.02562 * 1 2 3 24 24 H 1.09004 * 112.93930 * 50.33391 * 9 7 2 25 25 H 1.08999 * 113.75869 * 336.23656 * 10 9 7 26 26 H 1.08998 * 113.75827 * 107.60735 * 10 9 7 27 27 H 1.08995 * 109.46939 * 196.67535 * 12 11 10 28 28 H 1.08993 * 109.47187 * 316.67367 * 12 11 10 29 29 H 1.08001 * 119.99685 * 180.23727 * 16 14 13 30 30 H 1.07998 * 120.00561 * 179.97438 * 19 17 16 31 31 H 1.08993 * 113.76206 * 221.08592 * 22 11 10 32 32 H 1.09000 * 113.76147 * 89.71275 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0050 9 6 1.2509 -2.4992 0.0005 10 6 0.7546 -2.9280 1.3932 11 7 1.1883 -4.2938 1.0157 12 6 1.8759 -4.9569 2.1318 13 6 0.8595 -5.4233 3.1420 14 6 0.5845 -4.6487 4.2547 15 17 1.4096 -3.1391 4.4870 16 6 -0.3521 -5.0746 5.1796 17 6 -1.0058 -6.2800 4.9971 18 17 -2.1758 -6.8178 6.1614 19 6 -0.7269 -7.0572 3.8871 20 6 0.2058 -6.6287 2.9595 21 17 0.5567 -7.6045 1.5673 22 6 2.1607 -3.7400 0.0478 23 1 -0.4850 0.8401 -0.0004 24 1 0.4838 -2.5469 -0.7725 25 1 1.3264 -2.4971 2.2150 26 1 -0.3228 -2.8289 1.5251 27 1 2.4348 -5.8140 1.7564 28 1 2.5622 -4.2544 2.6045 29 1 -0.5696 -4.4680 6.0463 30 1 -1.2369 -7.9984 3.7449 31 1 2.2047 -4.2884 -0.8931 32 1 3.1446 -3.5470 0.4754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143794570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = 23.019051 kcal Electronic energy + Delta-G solvation = -19723.064470 eV Core-core repulsion = 16375.484554 eV Total energy + Delta-G solvation = -3347.579916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.999 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18708 -39.94136 -37.90067 -37.84043 -37.12094 -34.87671 -33.46397 -31.91792 -30.03021 -27.36724 -26.66950 -24.59051 -24.18442 -22.37049 -20.40292 -18.81791 -18.49192 -17.62485 -16.88533 -16.72967 -16.21622 -15.92182 -15.54553 -15.49107 -15.01060 -14.58790 -13.96492 -13.87886 -13.53902 -13.37038 -13.18665 -13.11382 -12.99305 -12.83800 -12.42208 -12.25692 -12.18527 -11.93134 -11.87111 -11.72622 -11.49532 -11.11975 -10.92194 -10.49846 -9.93295 -9.80975 -9.47270 -8.12357 -6.22965 -0.30265 -0.24741 0.49055 1.11765 1.16865 1.40547 1.43137 1.53738 2.08849 2.43354 3.17655 3.26943 3.50157 3.66731 3.74204 3.94026 4.03086 4.26792 4.36650 4.47257 4.63834 4.69791 4.75034 4.80102 4.89986 4.97820 5.01104 5.14278 5.29803 5.53077 5.66890 5.89072 6.33238 6.36491 6.85913 7.45167 8.97156 Molecular weight = 319.00amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.004204 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.377079 B = 6658.523495 C = 7605.957091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.019 3.981 10 C 0.025 3.975 11 N -0.474 5.474 12 C 0.051 3.949 13 C -0.062 4.062 14 C -0.022 4.022 15 Cl -0.045 7.045 16 C -0.098 4.098 17 C -0.017 4.017 18 Cl -0.035 7.035 19 C -0.095 4.095 20 C -0.005 4.005 21 Cl -0.035 7.035 22 C 0.015 3.985 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.081 0.919 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -15.341 12.112 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.104 4.104 11 N -0.196 5.196 12 C -0.077 4.077 13 C -0.064 4.064 14 C -0.050 4.050 15 Cl -0.016 7.016 16 C -0.117 4.117 17 C -0.044 4.044 18 Cl -0.006 7.006 19 C -0.114 4.114 20 C -0.033 4.033 21 Cl -0.006 7.006 22 C -0.113 4.113 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.189 0.811 31 H 0.099 0.901 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.896 -15.730 11.901 19.745 hybrid contribution 0.747 1.666 0.218 1.839 sum -0.149 -14.064 12.119 18.566 Atomic orbital electron populations 1.70098 1.07416 1.27293 1.51056 1.25737 0.95491 1.02338 0.94542 0.85636 0.79345 0.79943 0.77563 1.18785 1.20657 1.20798 1.21439 0.92970 0.91497 1.50717 0.92334 1.20292 0.94081 0.92246 0.93399 1.23986 0.98428 0.87832 1.00181 1.68578 1.25951 1.15920 1.09170 1.21677 0.93841 1.00514 0.91664 1.19625 0.98776 0.93216 0.94782 1.20640 0.98226 0.89597 0.96505 1.98413 1.77308 1.29695 1.96200 1.21124 0.94671 0.95833 1.00062 1.20519 0.95607 0.95060 0.93227 1.98397 1.55950 1.89449 1.56829 1.21183 0.96965 1.01628 0.91617 1.20459 0.98561 0.92955 0.91279 1.98389 1.93816 1.68498 1.39881 1.23926 0.94976 0.95852 0.96544 0.93004 0.95947 0.91356 0.94361 0.88322 0.92655 0.81770 0.81136 0.90068 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.74 13.29 21.45 0.28 -53.45 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.53 -28.57 8.77 25.60 0.22 -28.34 16 8 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.02 0.95 3.60 -10.89 -0.04 0.91 16 10 C 0.02 1.13 6.73 86.37 0.58 1.71 16 11 N -0.47 -18.35 6.21 -911.92 -5.66 -24.01 16 12 C 0.05 1.63 4.15 85.56 0.35 1.98 16 13 C -0.06 -1.80 5.15 -19.82 -0.10 -1.90 16 14 C -0.02 -0.61 6.19 22.32 0.14 -0.47 16 15 Cl -0.05 -1.37 24.52 -2.72 -0.07 -1.44 16 16 C -0.10 -2.23 9.61 22.32 0.21 -2.02 16 17 C -0.02 -0.34 6.32 22.32 0.14 -0.20 16 18 Cl -0.04 -0.62 28.96 -2.72 -0.08 -0.69 16 19 C -0.09 -1.99 9.61 22.32 0.21 -1.77 16 20 C 0.00 -0.12 6.31 22.32 0.14 0.03 16 21 Cl -0.04 -0.86 27.43 -2.72 -0.07 -0.94 16 22 C 0.02 0.62 7.54 86.41 0.65 1.27 16 23 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 24 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 3.09 5.21 -2.39 -0.01 3.08 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.10 2.84 7.20 -2.39 -0.02 2.83 16 28 H 0.06 1.82 6.20 -2.39 -0.01 1.81 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 32 H 0.06 2.50 7.84 -2.39 -0.02 2.48 16 Total: -1.00 -58.94 313.81 0.57 -58.37 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.16 Total: 4.38 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 2.98 Total: -27.33 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -5.38 Total: -77.46 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.22 Total: -3.07 kcal Total: -58.94 0.57 -58.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143794570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.386 kcal (2) G-P(sol) polarization free energy of solvation -58.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds