Wall clock time and date at job start Tue Mar 31 2020 12:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46904 * 110.99734 * 2 1
4 4 C 1.50702 * 109.46754 * 293.94725 * 3 2 1
5 5 H 1.08005 * 120.00350 * 0.02562 * 4 3 2
6 6 C 1.37880 * 119.99834 * 180.02562 * 4 3 2
7 7 N 1.31509 * 120.00097 * 0.02562 * 6 4 3
8 8 Si 1.86799 * 119.99854 * 180.02562 * 6 4 3
9 9 H 1.48508 * 109.47134 * 59.99945 * 8 6 4
10 10 H 1.48501 * 109.47175 * 179.97438 * 8 6 4
11 11 H 1.48495 * 109.47434 * 299.99926 * 8 6 4
12 12 C 1.46899 * 110.99760 * 123.94771 * 2 1 3
13 13 C 1.50693 * 109.47066 * 66.04909 * 12 2 1
14 14 C 1.38465 * 120.00820 * 90.00413 * 13 12 2
15 15 F 1.35104 * 119.99149 * 359.96990 * 14 13 12
16 16 C 1.38426 * 120.01067 * 179.70299 * 14 13 12
17 17 C 1.38224 * 120.01895 * 0.26855 * 16 14 13
18 18 C 1.38402 * 120.00477 * 359.97438 * 17 16 14
19 19 F 1.35103 * 120.00063 * 180.02562 * 18 17 16
20 20 C 1.38248 * 120.00847 * 270.22906 * 13 12 2
21 21 Br 1.89106 * 120.00423 * 0.04527 * 20 13 12
22 22 H 1.08994 * 109.47332 * 296.05205 * 1 2 3
23 23 H 1.09002 * 109.47022 * 56.05042 * 1 2 3
24 24 H 1.09005 * 109.46973 * 176.04766 * 1 2 3
25 25 H 1.08998 * 109.47595 * 53.94696 * 3 2 1
26 26 H 1.09000 * 109.46800 * 173.95170 * 3 2 1
27 27 H 0.97002 * 120.00140 * 180.02562 * 7 6 4
28 28 H 1.09003 * 109.47235 * 306.04892 * 12 2 1
29 29 H 1.09004 * 109.47092 * 186.04863 * 12 2 1
30 30 H 1.08001 * 119.99220 * 180.29347 * 16 14 13
31 31 H 1.07997 * 119.99433 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6370 2.0470 -1.2986
5 1 1.0740 1.5113 -2.0486
6 6 2.0277 3.3491 -1.5291
7 7 2.7135 4.0013 -0.6160
8 14 1.5827 4.1867 -3.1384
9 1 0.1054 4.2241 -3.2851
10 1 2.1149 5.5731 -3.1385
11 1 2.1735 3.4291 -4.2707
12 6 1.9954 -0.7659 1.1377
13 6 1.6369 -2.2202 0.9730
14 6 2.4953 -3.0731 0.2999
15 9 3.6540 -2.6011 -0.2098
16 6 2.1689 -4.4104 0.1540
17 6 0.9836 -4.8938 0.6753
18 6 0.1227 -4.0409 1.3439
19 9 -1.0356 -4.5136 1.8539
20 6 0.4488 -2.7023 1.4900
21 35 -0.7274 -1.5364 2.4028
22 1 -0.3634 0.4513 0.9232
23 1 -0.3633 0.5739 -0.8525
24 1 -0.3633 -1.0253 -0.0708
25 1 1.5610 1.9275 0.8308
26 1 3.0797 1.3444 0.1083
27 1 2.9881 4.9174 -0.7780
28 1 1.5610 -0.3871 2.0629
29 1 3.0797 -0.6610 1.1758
30 1 2.8409 -5.0764 -0.3670
31 1 0.7295 -5.9373 0.5616
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001143811903.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:25
Heat of formation + Delta-G solvation = -46.437570 kcal
Electronic energy + Delta-G solvation = -18930.139150 eV
Core-core repulsion = 15508.446933 eV
Total energy + Delta-G solvation = -3421.692217 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 319.008 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-49.13010 -48.82957 -39.32418 -36.50414 -33.08034 -32.20534 -30.99847 -29.28235
-27.32026 -26.71905 -24.19282 -22.77830 -21.87285 -20.28007 -17.59194 -17.51425
-17.29089 -16.33328 -16.12109 -15.39595 -14.86247 -14.60149 -14.48611 -14.22284
-14.02980 -13.84511 -13.36121 -12.77109 -12.43807 -12.25380 -11.94247 -11.64009
-11.28063 -11.22578 -11.04577 -10.73750 -10.69752 -10.31374 -9.93919 -9.88226
-9.26845 -8.98798 -8.62210 -8.42308 -7.26831 -6.02476 -4.03665 0.62110
0.78988 1.38306 3.06860 3.34455 3.38201 3.41506 3.84775 4.10403
4.35938 4.43592 4.59765 4.80516 5.08758 5.20389 5.33712 5.44255
5.60744 5.70476 5.77321 6.02565 6.07239 6.16201 6.40275 6.52637
6.78269 7.23851 7.30975 7.76673 8.03546 8.14783 8.49925 9.02919
9.60145 11.08429
Molecular weight = 319.01amu
Principal moments of inertia in cm(-1)
A = 0.018974 B = 0.004958 C = 0.004286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1475.343830 B = 5646.110465 C = 6530.649970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.528 5.528
3 C 0.194 3.806
4 C -0.507 4.507
5 H 0.063 0.937
6 C 0.056 3.944
7 N -0.899 5.899
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.077 3.923
13 C -0.043 4.043
14 C 0.117 3.883
15 F -0.118 7.118
16 C -0.114 4.114
17 C -0.128 4.128
18 C 0.112 3.888
19 F -0.124 7.124
20 C -0.105 4.105
21 Br -0.011 7.011
22 H 0.024 0.976
23 H 0.073 0.927
24 H 0.042 0.958
25 H -0.006 1.006
26 H 0.031 0.969
27 H 0.262 0.738
28 H 0.053 0.947
29 H 0.089 0.911
30 H 0.151 0.849
31 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.602 -17.943 6.660 19.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.252 5.252
3 C 0.070 3.930
4 C -0.545 4.545
5 H 0.081 0.919
6 C -0.145 4.145
7 N -0.538 5.538
8 Si 0.726 3.274
9 H -0.203 1.203
10 H -0.213 1.213
11 H -0.202 1.202
12 C -0.051 4.051
13 C -0.046 4.046
14 C 0.096 3.904
15 F -0.097 7.097
16 C -0.133 4.133
17 C -0.148 4.148
18 C 0.090 3.910
19 F -0.103 7.103
20 C -0.186 4.186
21 Br 0.075 6.925
22 H 0.043 0.957
23 H 0.092 0.908
24 H 0.061 0.939
25 H 0.012 0.988
26 H 0.049 0.951
27 H 0.071 0.929
28 H 0.070 0.930
29 H 0.107 0.893
30 H 0.168 0.832
31 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -4.799 -17.513 6.614 19.326
hybrid contribution -0.207 0.662 -0.343 0.774
sum -5.006 -16.851 6.271 18.664
Atomic orbital electron populations
1.22620 0.88602 0.99552 1.01231 1.62242 1.07339 1.18010 1.37656
1.19759 0.95457 0.80875 0.96921 1.21089 1.34935 0.96913 1.01598
0.91880 1.24970 0.95267 0.97290 0.96988 1.69944 1.38249 1.11515
1.34108 0.86553 0.78697 0.78322 0.83792 1.20287 1.21348 1.20151
1.21177 1.01684 0.86996 0.95221 1.19867 0.91571 0.97979 0.95214
1.17327 0.84045 0.91678 0.97374 1.91575 1.44887 1.88836 1.84371
1.21102 0.97592 0.93998 1.00640 1.20864 0.93812 1.00478 0.99600
1.17278 0.84178 0.90774 0.98772 1.91550 1.45609 1.88361 1.84742
1.21742 0.97435 0.93058 1.06382 1.96752 1.59537 1.62058 1.74108
0.95723 0.90782 0.93887 0.98795 0.95052 0.92853 0.92955 0.89297
0.83155 0.83122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.57 7.70 60.07 0.46 1.03 16
2 N -0.53 -11.50 4.74 -245.82 -1.17 -12.66 16
3 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16
4 C -0.51 -14.26 8.46 -34.44 -0.29 -14.55 16
5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16
6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
7 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16
8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16
9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
12 C 0.08 1.41 4.72 -4.98 -0.02 1.39 16
13 C -0.04 -0.67 4.90 -104.54 -0.51 -1.18 16
14 C 0.12 1.65 7.24 -39.43 -0.29 1.37 16
15 F -0.12 -1.87 16.48 2.25 0.04 -1.83 16
16 C -0.11 -1.20 10.02 -39.52 -0.40 -1.59 16
17 C -0.13 -1.26 10.02 -39.53 -0.40 -1.66 16
18 C 0.11 1.38 7.27 -39.41 -0.29 1.10 16
19 F -0.12 -1.54 16.73 2.25 0.04 -1.50 16
20 C -0.10 -1.50 5.16 -39.46 -0.20 -1.71 16
21 Br -0.01 -0.15 27.45 -68.01 -1.87 -2.02 16
22 H 0.02 0.48 6.62 -51.93 -0.34 0.13 16
23 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16
24 H 0.04 0.77 5.52 -51.93 -0.29 0.49 16
25 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16
26 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16
27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
28 H 0.05 0.93 6.64 -51.93 -0.34 0.59 16
29 H 0.09 1.63 7.43 -51.93 -0.39 1.24 16
30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16
31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16
LS Contribution 285.78 15.07 4.31 4.31
Total: -1.00 -29.91 285.78 -7.89 -37.79
By element:
Atomic # 1 Polarization: -2.68 SS G_CDS: -2.90 Total: -5.58 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -2.05 Total: -9.27 kcal
Atomic # 7 Polarization: -38.17 SS G_CDS: -0.43 Total: -38.60 kcal
Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Atomic # 35 Polarization: -0.15 SS G_CDS: -1.87 Total: -2.02 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -29.91 -7.89 -37.79 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143811903.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.644 kcal
(2) G-P(sol) polarization free energy of solvation -29.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.549 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds