Wall clock time and date at job start Tue Mar 31 2020 12:27:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46904 * 110.99734 * 2 1
4 4 C 1.50702 * 109.46754 * 293.94725 * 3 2 1
5 5 H 1.08005 * 120.00350 * 0.02562 * 4 3 2
6 6 C 1.37880 * 119.99834 * 180.02562 * 4 3 2
7 7 N 1.31509 * 120.00097 * 0.02562 * 6 4 3
8 8 Si 1.86799 * 119.99854 * 180.02562 * 6 4 3
9 9 H 1.48508 * 109.47134 * 59.99945 * 8 6 4
10 10 H 1.48501 * 109.47175 * 179.97438 * 8 6 4
11 11 H 1.48495 * 109.47434 * 299.99926 * 8 6 4
12 12 C 1.46899 * 110.99760 * 123.94771 * 2 1 3
13 13 C 1.50693 * 109.47066 * 66.04909 * 12 2 1
14 14 C 1.38465 * 120.00820 * 90.00413 * 13 12 2
15 15 F 1.35104 * 119.99149 * 359.96990 * 14 13 12
16 16 C 1.38426 * 120.01067 * 179.70299 * 14 13 12
17 17 C 1.38224 * 120.01895 * 0.26855 * 16 14 13
18 18 C 1.38402 * 120.00477 * 359.97438 * 17 16 14
19 19 F 1.35103 * 120.00063 * 180.02562 * 18 17 16
20 20 C 1.38248 * 120.00847 * 270.22906 * 13 12 2
21 21 Br 1.89106 * 120.00423 * 0.04527 * 20 13 12
22 22 H 1.08994 * 109.47332 * 296.05205 * 1 2 3
23 23 H 1.09002 * 109.47022 * 56.05042 * 1 2 3
24 24 H 1.09005 * 109.46973 * 176.04766 * 1 2 3
25 25 H 1.08998 * 109.47595 * 53.94696 * 3 2 1
26 26 H 1.09000 * 109.46800 * 173.95170 * 3 2 1
27 27 H 0.97002 * 120.00140 * 180.02562 * 7 6 4
28 28 H 1.09003 * 109.47235 * 306.04892 * 12 2 1
29 29 H 1.09004 * 109.47092 * 186.04863 * 12 2 1
30 30 H 1.08001 * 119.99220 * 180.29347 * 16 14 13
31 31 H 1.07997 * 119.99433 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6370 2.0470 -1.2986
5 1 1.0740 1.5113 -2.0486
6 6 2.0277 3.3491 -1.5291
7 7 2.7135 4.0013 -0.6160
8 14 1.5827 4.1867 -3.1384
9 1 0.1054 4.2241 -3.2851
10 1 2.1149 5.5731 -3.1385
11 1 2.1735 3.4291 -4.2707
12 6 1.9954 -0.7659 1.1377
13 6 1.6369 -2.2202 0.9730
14 6 2.4953 -3.0731 0.2999
15 9 3.6540 -2.6011 -0.2098
16 6 2.1689 -4.4104 0.1540
17 6 0.9836 -4.8938 0.6753
18 6 0.1227 -4.0409 1.3439
19 9 -1.0356 -4.5136 1.8539
20 6 0.4488 -2.7023 1.4900
21 35 -0.7274 -1.5364 2.4028
22 1 -0.3634 0.4513 0.9232
23 1 -0.3633 0.5739 -0.8525
24 1 -0.3633 -1.0253 -0.0708
25 1 1.5610 1.9275 0.8308
26 1 3.0797 1.3444 0.1083
27 1 2.9881 4.9174 -0.7780
28 1 1.5610 -0.3871 2.0629
29 1 3.0797 -0.6610 1.1758
30 1 2.8409 -5.0764 -0.3670
31 1 0.7295 -5.9373 0.5616
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001143811903.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:24
Heat of formation + Delta-G solvation = -64.628111 kcal
Electronic energy + Delta-G solvation = -18930.927951 eV
Core-core repulsion = 15508.446933 eV
Total energy + Delta-G solvation = -3422.481018 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 319.008 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-50.09129 -49.96639 -40.43750 -38.09594 -34.89433 -33.61788 -32.23446 -30.29384
-29.26982 -28.19595 -25.92053 -23.78882 -23.34096 -21.90637 -18.75120 -18.63604
-18.43258 -18.16202 -17.28258 -16.74804 -16.43864 -16.08437 -15.79704 -15.57779
-15.44648 -15.10147 -14.45367 -14.15639 -13.85434 -13.73143 -13.41464 -13.36824
-12.83572 -12.81416 -12.61979 -12.47715 -12.21197 -11.90835 -11.68146 -11.33260
-11.15516 -10.61303 -10.09453 -9.64916 -9.03609 -8.20645 -6.30740 -0.36339
-0.21761 0.30911 1.41162 1.44418 1.52301 2.08599 2.40724 2.84924
3.10208 3.11915 3.30578 3.44361 3.61358 3.85440 4.13922 4.28034
4.44335 4.57174 4.63766 4.71469 4.79881 4.83025 4.97647 5.04265
5.16377 5.25082 5.55924 5.62381 6.00396 6.23420 6.51322 6.83460
7.38407 8.90323
Molecular weight = 319.01amu
Principal moments of inertia in cm(-1)
A = 0.018974 B = 0.004958 C = 0.004286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1475.343830 B = 5646.110465 C = 6530.649970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 N -0.536 5.536
3 C 0.210 3.790
4 C -0.524 4.524
5 H 0.062 0.938
6 C 0.004 3.996
7 N -0.933 5.933
8 Si 0.969 3.031
9 H -0.268 1.268
10 H -0.282 1.282
11 H -0.269 1.269
12 C 0.081 3.919
13 C -0.066 4.066
14 C 0.098 3.902
15 F -0.135 7.135
16 C -0.093 4.093
17 C -0.102 4.102
18 C 0.109 3.891
19 F -0.123 7.123
20 C -0.117 4.117
21 Br -0.023 7.023
22 H 0.026 0.974
23 H 0.055 0.945
24 H 0.065 0.935
25 H -0.033 1.033
26 H 0.005 0.995
27 H 0.265 0.735
28 H 0.051 0.949
29 H 0.078 0.922
30 H 0.190 0.810
31 H 0.196 0.804
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.276 -20.404 5.507 21.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.260 5.260
3 C 0.084 3.916
4 C -0.562 4.562
5 H 0.080 0.920
6 C -0.195 4.195
7 N -0.574 5.574
8 Si 0.794 3.206
9 H -0.193 1.193
10 H -0.207 1.207
11 H -0.194 1.194
12 C -0.047 4.047
13 C -0.069 4.069
14 C 0.077 3.923
15 F -0.113 7.113
16 C -0.111 4.111
17 C -0.121 4.121
18 C 0.088 3.912
19 F -0.102 7.102
20 C -0.198 4.198
21 Br 0.063 6.937
22 H 0.044 0.956
23 H 0.074 0.926
24 H 0.083 0.917
25 H -0.015 1.015
26 H 0.024 0.976
27 H 0.074 0.926
28 H 0.069 0.931
29 H 0.096 0.904
30 H 0.207 0.793
31 H 0.213 0.787
Dipole moment (debyes) X Y Z Total
from point charges -5.484 -20.001 5.469 21.448
hybrid contribution 0.007 1.295 0.076 1.297
sum -5.477 -18.706 5.545 20.265
Atomic orbital electron populations
1.22550 0.87487 1.00552 1.00401 1.62115 1.08343 1.15575 1.39928
1.19388 0.93725 0.83086 0.95368 1.21391 1.35065 0.97549 1.02244
0.91969 1.25889 0.94933 0.97948 1.00686 1.70073 1.39160 1.11927
1.36204 0.85440 0.78819 0.77202 0.79184 1.19260 1.20727 1.19352
1.21063 1.00854 0.88868 0.93868 1.19549 0.93142 0.96313 0.97938
1.17680 0.83560 0.93174 0.97903 1.91535 1.45776 1.89295 1.84710
1.21504 0.97978 0.92474 0.99184 1.21366 0.92166 1.01966 0.96650
1.17473 0.84603 0.90239 0.98900 1.91559 1.45676 1.88146 1.84778
1.21763 0.97030 0.94001 1.06982 1.96736 1.59693 1.62786 1.74441
0.95571 0.92646 0.91653 1.01517 0.97648 0.92630 0.93051 0.90402
0.79321 0.78697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.56 7.70 127.69 0.98 2.54 16
2 N -0.54 -24.07 4.74 -931.63 -4.42 -28.49 16
3 C 0.21 11.47 4.72 85.56 0.40 11.88 16
4 C -0.52 -30.24 8.46 25.60 0.22 -30.02 16
5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16
6 C 0.00 0.21 5.46 84.66 0.46 0.67 16
7 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16
8 Si 0.97 44.75 29.54 68.60 2.03 46.77 16
9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
12 C 0.08 3.08 4.72 85.56 0.40 3.48 16
13 C -0.07 -2.02 4.90 -19.81 -0.10 -2.12 16
14 C 0.10 2.61 7.24 22.37 0.16 2.77 16
15 F -0.13 -4.20 16.48 44.97 0.74 -3.46 16
16 C -0.09 -1.56 10.02 22.31 0.22 -1.34 16
17 C -0.10 -1.53 10.02 22.31 0.22 -1.30 16
18 C 0.11 2.38 7.27 22.38 0.16 2.55 16
19 F -0.12 -2.70 16.73 44.97 0.75 -1.95 16
20 C -0.12 -3.19 5.16 22.35 0.12 -3.08 16
21 Br -0.02 -0.64 27.45 -20.37 -0.56 -1.20 16
22 H 0.03 1.04 6.62 -2.39 -0.02 1.03 16
23 H 0.05 2.43 6.76 -2.39 -0.02 2.41 16
24 H 0.06 2.35 5.52 -2.38 -0.01 2.33 16
25 H -0.03 -1.93 8.12 -2.39 -0.02 -1.95 16
26 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16
27 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16
28 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16
29 H 0.08 3.03 7.43 -2.38 -0.02 3.02 16
30 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16
31 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16
Total: -1.00 -66.48 285.78 3.25 -63.23
By element:
Atomic # 1 Polarization: -5.69 SS G_CDS: 1.17 Total: -4.52 kcal
Atomic # 6 Polarization: -17.24 SS G_CDS: 3.26 Total: -13.98 kcal
Atomic # 7 Polarization: -80.75 SS G_CDS: -4.14 Total: -84.89 kcal
Atomic # 9 Polarization: -6.91 SS G_CDS: 1.49 Total: -5.41 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal
Atomic # 35 Polarization: -0.64 SS G_CDS: -0.56 Total: -1.20 kcal
Total: -66.48 3.25 -63.23 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143811903.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.395 kcal
(2) G-P(sol) polarization free energy of solvation -66.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds