Wall clock time and date at job start Tue Mar 31 2020 12:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47011 * 274.98550 * 3 2 1 5 5 H 1.48495 * 109.46973 * 34.99119 * 3 2 1 6 6 H 1.48504 * 109.46864 * 154.98791 * 3 2 1 7 7 C 1.40054 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00147 * 186.31455 * 7 2 1 9 9 C 1.41580 * 119.99604 * 6.31865 * 7 2 1 10 10 N 1.33445 * 119.23784 * 353.64127 * 9 7 2 11 11 C 1.32180 * 120.85536 * 179.97438 * 10 9 7 12 12 Cl 1.73609 * 120.33430 * 180.02562 * 11 10 9 13 13 C 1.38839 * 119.32520 * 0.02562 * 11 10 9 14 14 C 1.39997 * 118.59565 * 359.97438 * 13 11 10 15 15 N 1.38540 * 120.45016 * 179.97438 * 14 13 11 16 16 C 1.46496 * 120.00201 * 0.28215 * 15 14 13 17 17 C 1.52995 * 109.47186 * 179.72236 * 16 15 14 18 18 C 1.53001 * 109.46985 * 180.02562 * 17 16 15 19 19 Br 1.96603 * 109.47177 * 179.97438 * 18 17 16 20 20 N 1.32597 * 119.09931 * 0.25748 * 14 13 11 21 21 H 0.97001 * 120.00103 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.70111 * 180.02562 * 13 11 10 23 23 H 0.97003 * 119.99612 * 179.97438 * 15 14 13 24 24 H 1.08999 * 109.47114 * 299.72444 * 16 15 14 25 25 H 1.09001 * 109.47101 * 59.72154 * 16 15 14 26 26 H 1.09002 * 109.46859 * 299.99471 * 17 16 15 27 27 H 1.08993 * 109.47328 * 59.99683 * 17 16 15 28 28 H 1.09007 * 109.46928 * 299.99797 * 18 17 16 29 29 H 1.08993 * 109.47473 * 59.99616 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4950 2.6199 0.8029 6 1 3.5872 1.4121 0.5920 7 6 2.0073 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.1023 9 6 1.3058 -2.4352 -0.1360 10 7 -0.0286 -2.4246 -0.1337 11 6 -0.7156 -3.5469 -0.2585 12 17 -2.4515 -3.5174 -0.2543 13 6 -0.0350 -4.7495 -0.3931 14 6 1.3649 -4.7309 -0.3923 15 7 2.0828 -5.9084 -0.5235 16 6 1.3774 -7.1839 -0.6706 17 6 2.3960 -8.3178 -0.8030 18 6 1.6592 -9.6498 -0.9573 19 35 2.9681 -11.1068 -1.1281 20 7 1.9943 -3.5715 -0.2585 21 1 -0.4850 0.8400 0.0004 22 1 -0.5740 -5.6796 -0.4970 23 1 3.0526 -5.8879 -0.5225 24 1 0.7529 -7.3569 0.2058 25 1 0.7512 -7.1521 -1.5623 26 1 3.0203 -8.1448 -1.6795 27 1 3.0221 -8.3496 0.0886 28 1 1.0344 -9.8230 -0.0810 29 1 1.0333 -9.6177 -1.8490 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163418840.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:31 Heat of formation + Delta-G solvation = 30.388682 kcal Electronic energy + Delta-G solvation = -16029.589516 eV Core-core repulsion = 13059.485072 eV Total energy + Delta-G solvation = -2970.104444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.978 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11421 -36.63623 -35.60221 -34.07979 -33.12240 -31.28155 -30.22919 -28.88279 -26.44917 -25.15043 -22.43184 -21.73163 -21.17573 -18.00178 -16.61048 -16.06864 -15.90070 -14.99852 -14.46732 -14.01467 -13.90875 -13.69712 -13.09137 -13.08698 -12.82735 -12.54690 -11.59359 -11.46849 -11.42520 -11.28946 -11.03571 -10.84175 -10.39936 -10.23630 -10.12625 -10.09320 -9.96301 -9.14952 -9.06100 -8.29510 -7.52074 -7.21658 -6.60711 -4.82626 1.41891 2.49338 2.93666 2.94479 3.04455 3.09276 3.11584 3.70896 3.87510 4.51178 4.58860 4.64515 4.82696 5.18972 5.19082 5.50884 5.77784 5.88905 5.92377 6.05608 6.31263 6.38653 6.78272 6.89435 7.09746 7.66338 8.08441 8.15901 8.49019 8.56401 9.01628 10.05765 10.20533 Molecular weight = 318.98amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002687 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247270 B =10418.159384 C =11604.252143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.096 0.904 9 C 0.434 3.566 10 N -0.527 5.527 11 C 0.269 3.731 12 Cl -0.082 7.082 13 C -0.406 4.406 14 C 0.455 3.545 15 N -0.730 5.730 16 C 0.139 3.861 17 C -0.132 4.132 18 C -0.071 4.071 19 Br -0.167 7.167 20 N -0.641 5.641 21 H 0.277 0.723 22 H 0.110 0.890 23 H 0.398 0.602 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -16.517 -1.930 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.429 4.429 8 H 0.114 0.886 9 C 0.198 3.802 10 N -0.248 5.248 11 C 0.088 3.912 12 Cl -0.054 7.054 13 C -0.439 4.439 14 C 0.208 3.792 15 N -0.368 5.368 16 C 0.012 3.988 17 C -0.171 4.171 18 C -0.187 4.187 19 Br -0.087 7.087 20 N -0.371 5.371 21 H 0.089 0.911 22 H 0.129 0.871 23 H 0.233 0.767 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.791 -16.055 -1.877 16.403 hybrid contribution -0.403 0.128 -0.099 0.434 sum 2.389 -15.927 -1.975 16.226 Atomic orbital electron populations 1.70149 1.07273 1.28435 1.26359 1.26139 0.95046 1.01483 0.93639 0.86104 0.80431 0.79909 0.79220 1.19286 1.19930 1.18235 1.19365 0.95177 0.87432 1.40922 0.88553 1.19475 0.83514 0.89910 0.87282 1.68597 1.08397 1.25425 1.22422 1.21452 0.85326 0.90881 0.93550 1.98296 1.11653 1.98789 1.96693 1.20902 0.93100 0.97641 1.32275 1.18105 0.87345 0.86321 0.87428 1.43965 1.07944 1.02614 1.82255 1.21104 0.94248 0.82102 1.01310 1.21955 0.98830 0.91894 1.04403 1.24632 0.96096 0.91079 1.06905 1.97397 1.61412 1.50891 1.98957 1.68229 1.40126 0.97384 1.31349 0.91132 0.87145 0.76684 0.92180 0.92195 0.90021 0.90007 0.87840 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.29 11.45 55.55 0.64 -17.66 15 2 C 0.06 1.62 5.49 -17.36 -0.10 1.52 15 3 Si 0.92 18.16 29.56 -169.99 -5.03 13.13 15 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.39 -10.53 9.37 -37.63 -0.35 -10.88 15 8 H 0.10 2.46 7.85 -52.49 -0.41 2.05 15 9 C 0.43 12.08 7.36 -158.35 -1.17 10.91 15 10 N -0.53 -14.59 7.89 -9.83 -0.08 -14.67 15 11 C 0.27 6.62 7.33 -17.18 -0.13 6.49 15 12 Cl -0.08 -1.72 29.15 -51.86 -1.51 -3.24 15 13 C -0.41 -9.01 9.23 -38.70 -0.36 -9.36 15 14 C 0.46 10.12 7.71 -154.98 -1.19 8.93 15 15 N -0.73 -12.17 5.71 -60.27 -0.34 -12.51 15 16 C 0.14 1.68 4.92 -4.05 -0.02 1.66 15 17 C -0.13 -1.19 5.39 -26.73 -0.14 -1.33 15 18 C -0.07 -0.53 6.61 37.16 0.25 -0.28 15 19 Br -0.17 -1.51 33.93 -68.01 -2.31 -3.81 15 20 N -0.64 -16.48 10.39 -11.90 -0.12 -16.60 15 21 H 0.28 6.51 8.29 -40.82 -0.34 6.17 15 22 H 0.11 2.12 6.85 -52.49 -0.36 1.76 15 23 H 0.40 6.19 8.60 -40.82 -0.35 5.84 15 24 H 0.06 0.73 7.97 -51.93 -0.41 0.31 15 25 H 0.06 0.73 7.97 -51.93 -0.41 0.31 15 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 28 H 0.10 0.68 8.14 -51.92 -0.42 0.25 15 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 15 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -29.68 292.90 -10.32 -40.00 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -2.78 Total: 3.30 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -3.21 Total: 7.65 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.09 Total: -61.44 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.51 Total: -3.24 kcal Atomic # 35 Polarization: -1.51 SS G_CDS: -2.31 Total: -3.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.68 -10.32 -40.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163418840.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.391 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds