Wall clock time and date at job start Tue Mar 31 2020 12:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47011 * 274.98550 * 3 2 1 5 5 H 1.48495 * 109.46973 * 34.99119 * 3 2 1 6 6 H 1.48504 * 109.46864 * 154.98791 * 3 2 1 7 7 C 1.40054 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00147 * 186.31455 * 7 2 1 9 9 C 1.41580 * 119.99604 * 6.31865 * 7 2 1 10 10 N 1.33445 * 119.23784 * 353.64127 * 9 7 2 11 11 C 1.32180 * 120.85536 * 179.97438 * 10 9 7 12 12 Cl 1.73609 * 120.33430 * 180.02562 * 11 10 9 13 13 C 1.38839 * 119.32520 * 0.02562 * 11 10 9 14 14 C 1.39997 * 118.59565 * 359.97438 * 13 11 10 15 15 N 1.38540 * 120.45016 * 179.97438 * 14 13 11 16 16 C 1.46496 * 120.00201 * 0.28215 * 15 14 13 17 17 C 1.52995 * 109.47186 * 179.72236 * 16 15 14 18 18 C 1.53001 * 109.46985 * 180.02562 * 17 16 15 19 19 Br 1.96603 * 109.47177 * 179.97438 * 18 17 16 20 20 N 1.32597 * 119.09931 * 0.25748 * 14 13 11 21 21 H 0.97001 * 120.00103 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.70111 * 180.02562 * 13 11 10 23 23 H 0.97003 * 119.99612 * 179.97438 * 15 14 13 24 24 H 1.08999 * 109.47114 * 299.72444 * 16 15 14 25 25 H 1.09001 * 109.47101 * 59.72154 * 16 15 14 26 26 H 1.09002 * 109.46859 * 299.99471 * 17 16 15 27 27 H 1.08993 * 109.47328 * 59.99683 * 17 16 15 28 28 H 1.09007 * 109.46928 * 299.99797 * 18 17 16 29 29 H 1.08993 * 109.47473 * 59.99616 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4950 2.6199 0.8029 6 1 3.5872 1.4121 0.5920 7 6 2.0073 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.1023 9 6 1.3058 -2.4352 -0.1360 10 7 -0.0286 -2.4246 -0.1337 11 6 -0.7156 -3.5469 -0.2585 12 17 -2.4515 -3.5174 -0.2543 13 6 -0.0350 -4.7495 -0.3931 14 6 1.3649 -4.7309 -0.3923 15 7 2.0828 -5.9084 -0.5235 16 6 1.3774 -7.1839 -0.6706 17 6 2.3960 -8.3178 -0.8030 18 6 1.6592 -9.6498 -0.9573 19 35 2.9681 -11.1068 -1.1281 20 7 1.9943 -3.5715 -0.2585 21 1 -0.4850 0.8400 0.0004 22 1 -0.5740 -5.6796 -0.4970 23 1 3.0526 -5.8879 -0.5225 24 1 0.7529 -7.3569 0.2058 25 1 0.7512 -7.1521 -1.5623 26 1 3.0203 -8.1448 -1.6795 27 1 3.0221 -8.3496 0.0886 28 1 1.0344 -9.8230 -0.0810 29 1 1.0333 -9.6177 -1.8490 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163418840.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:31 Heat of formation + Delta-G solvation = 12.695988 kcal Electronic energy + Delta-G solvation = -16030.356729 eV Core-core repulsion = 13059.485072 eV Total energy + Delta-G solvation = -2970.871657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.978 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90619 -37.92736 -37.34235 -35.63226 -34.52644 -32.97907 -31.54235 -30.10960 -28.32931 -26.20198 -24.08467 -23.23985 -22.38212 -19.76998 -18.31708 -17.79261 -16.72073 -16.60324 -15.91460 -15.69482 -15.42457 -15.20118 -14.59548 -14.28966 -14.00412 -13.47739 -13.13534 -13.12090 -12.90332 -12.71332 -12.23621 -12.16595 -12.01368 -11.90716 -11.52832 -10.92405 -10.88982 -10.82046 -10.74410 -10.11244 -9.41794 -8.81399 -8.44214 -6.78605 0.64371 0.78373 1.14271 1.14616 1.43241 1.54453 1.59544 2.20996 2.41863 2.75219 3.84428 3.85985 3.90147 3.96165 4.25309 4.42496 4.50495 4.53651 4.65021 4.69610 4.97895 5.03723 5.07031 5.16162 5.35841 6.02251 6.17977 6.50330 6.68422 6.75666 7.23619 8.20294 8.37106 Molecular weight = 318.98amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002687 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.247270 B =10418.159384 C =11604.252143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.024 3.976 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.428 4.428 8 H 0.095 0.905 9 C 0.408 3.592 10 N -0.564 5.564 11 C 0.245 3.755 12 Cl -0.058 7.058 13 C -0.399 4.399 14 C 0.448 3.552 15 N -0.717 5.717 16 C 0.134 3.866 17 C -0.120 4.120 18 C -0.065 4.065 19 Br -0.180 7.180 20 N -0.666 5.666 21 H 0.285 0.715 22 H 0.142 0.858 23 H 0.404 0.596 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -17.377 -2.127 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.464 4.464 8 H 0.113 0.887 9 C 0.171 3.829 10 N -0.287 5.287 11 C 0.066 3.934 12 Cl -0.030 7.030 13 C -0.431 4.431 14 C 0.199 3.801 15 N -0.353 5.353 16 C 0.009 3.991 17 C -0.159 4.159 18 C -0.181 4.181 19 Br -0.100 7.100 20 N -0.398 5.398 21 H 0.096 0.904 22 H 0.160 0.840 23 H 0.240 0.760 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.885 -17.009 -2.081 17.377 hybrid contribution -0.497 0.191 -0.052 0.535 sum 2.387 -16.818 -2.133 17.120 Atomic orbital electron populations 1.70225 1.08954 1.29847 1.27060 1.27085 0.95839 1.04683 0.92393 0.84929 0.78948 0.74758 0.79446 1.18679 1.18788 1.17727 1.19691 0.95383 0.88547 1.42737 0.88706 1.19876 0.84199 0.91018 0.87846 1.68579 1.08638 1.26987 1.24486 1.21932 0.86700 0.91231 0.93533 1.98286 1.09345 1.98757 1.96578 1.21198 0.93263 0.98070 1.30574 1.18488 0.88059 0.87027 0.86489 1.44163 1.08357 1.02398 1.80381 1.21380 0.95044 0.80791 1.01879 1.21828 0.98062 0.91444 1.04538 1.24650 0.95595 0.89478 1.08343 1.97412 1.62159 1.51466 1.98988 1.68264 1.40563 0.98162 1.32763 0.90428 0.84040 0.76050 0.91471 0.91510 0.89952 0.89923 0.86456 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.34 11.45 21.84 0.25 -39.09 15 2 C 0.02 1.23 5.49 85.30 0.47 1.70 15 3 Si 1.00 37.39 29.56 68.60 2.03 39.41 15 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.25 -9.16 7.11 99.48 0.71 -8.46 15 7 C -0.43 -23.57 9.37 23.54 0.22 -23.35 15 8 H 0.09 5.00 7.85 -2.91 -0.02 4.98 15 9 C 0.41 23.32 7.36 135.16 0.99 24.31 15 10 N -0.56 -31.91 7.89 -185.01 -1.46 -33.36 15 11 C 0.25 12.05 7.33 84.78 0.62 12.67 15 12 Cl -0.06 -2.38 29.15 -2.72 -0.08 -2.46 15 13 C -0.40 -17.25 9.23 22.84 0.21 -17.03 15 14 C 0.45 19.64 7.71 133.37 1.03 20.67 15 15 N -0.72 -22.73 5.71 -344.58 -1.97 -24.70 15 16 C 0.13 2.88 4.92 86.38 0.43 3.31 15 17 C -0.12 -1.84 5.39 30.59 0.16 -1.67 15 18 C -0.06 -0.78 6.61 71.98 0.48 -0.30 15 19 Br -0.18 -2.90 33.93 -20.37 -0.69 -3.60 15 20 N -0.67 -34.78 10.39 -191.55 -1.99 -36.77 15 21 H 0.28 13.56 8.29 -92.71 -0.77 12.79 15 22 H 0.14 5.07 6.85 -2.91 -0.02 5.05 15 23 H 0.40 12.01 8.60 -92.71 -0.80 11.21 15 24 H 0.07 1.41 7.97 -2.39 -0.02 1.39 15 25 H 0.07 1.41 7.97 -2.39 -0.02 1.39 15 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 28 H 0.12 1.14 8.14 -2.38 -0.02 1.12 15 29 H 0.12 1.14 8.14 -2.39 -0.02 1.12 15 Total: -1.00 -65.57 292.90 1.10 -64.47 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.40 Total: 15.79 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 4.61 Total: 20.30 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -5.17 Total: -133.92 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Atomic # 35 Polarization: -2.90 SS G_CDS: -0.69 Total: -3.60 kcal Total: -65.57 1.10 -64.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163418840.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.169 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds