Wall clock time and date at job start Tue Mar 31 2020 12:54:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42898 * 109.47164 * 2 1
4 4 C 1.34908 * 117.00199 * 179.97438 * 3 2 1
5 5 O 1.21663 * 119.99971 * 0.02562 * 4 3 2
6 6 C 1.46251 * 120.00177 * 180.02562 * 4 3 2
7 7 C 1.44799 * 123.63968 * 90.20790 * 6 4 3
8 8 C 1.50699 * 123.40924 * 0.02562 * 7 6 4
9 9 C 1.32394 * 113.18192 * 180.24569 * 7 6 4
10 10 S 1.75454 * 110.88403 * 359.77642 * 9 7 6
11 11 C 1.37337 * 123.64024 * 270.02983 * 6 4 3
12 12 N 1.38129 * 124.67334 * 0.03262 * 11 6 4
13 13 S 1.65606 * 120.00107 * 179.72554 * 12 11 6
14 14 O 1.42105 * 106.40008 * 311.45849 * 13 12 11
15 15 O 1.42098 * 106.40370 * 178.54035 * 13 12 11
16 16 C 1.76193 * 107.21910 * 65.00005 * 13 12 11
17 17 H 1.08002 * 120.00351 * 0.02562 * 16 13 12
18 18 C 1.37881 * 120.00314 * 180.02562 * 16 13 12
19 19 N 1.31523 * 119.99660 * 359.97438 * 18 16 13
20 20 Si 1.86796 * 120.00522 * 179.97438 * 18 16 13
21 21 H 1.48502 * 109.46991 * 89.99398 * 20 18 16
22 22 H 1.48494 * 109.47334 * 210.00187 * 20 18 16
23 23 H 1.48506 * 109.46800 * 329.99864 * 20 18 16
24 24 H 1.08998 * 109.47107 * 179.97438 * 1 2 3
25 25 H 1.09008 * 109.46724 * 299.99373 * 1 2 3
26 26 H 1.08996 * 109.47516 * 59.99424 * 1 2 3
27 27 H 1.09003 * 109.47115 * 240.00415 * 2 1 3
28 28 H 1.09004 * 109.47648 * 120.00311 * 2 1 3
29 29 H 1.09000 * 109.47582 * 270.22133 * 8 7 6
30 30 H 1.08997 * 109.47256 * 30.22677 * 8 7 6
31 31 H 1.09004 * 109.46803 * 150.22638 * 8 7 6
32 32 H 1.07994 * 124.56209 * 179.77432 * 9 7 6
33 33 H 0.97002 * 120.00283 * 359.72807 * 12 11 6
34 34 H 0.96997 * 119.99726 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3437 1.5241 0.0005
5 8 4.0849 0.5592 0.0005
6 6 3.9027 2.8755 0.0011
7 6 4.2129 3.6147 1.2070
8 6 3.9930 3.0692 2.5944
9 6 4.7050 4.8202 0.9672
10 16 4.8223 5.1161 -0.7582
11 6 4.1934 3.5791 -1.1419
12 7 3.9976 3.1083 -2.4257
13 16 4.3835 4.0603 -3.7246
14 8 3.8007 5.3324 -3.4771
15 8 4.1027 3.2892 -4.8847
16 6 6.1290 4.2987 -3.6962
17 1 6.7231 3.8478 -2.9150
18 6 6.7368 5.0609 -4.6713
19 7 6.0135 5.6096 -5.6229
20 14 8.5872 5.3143 -4.6408
21 1 9.2472 4.2371 -5.4213
22 1 8.9163 6.6326 -5.2399
23 1 9.0691 5.2746 -3.2367
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5139 -0.8899
27 1 1.8933 -0.5138 -0.8900
28 1 1.8934 -0.5139 0.8900
29 1 2.9888 3.3266 2.9312
30 1 4.1047 1.9850 2.5805
31 1 4.7264 3.5013 3.2752
32 1 4.9952 5.5265 1.7309
33 1 3.6339 2.2201 -2.5664
34 1 6.4411 6.1456 -6.3091
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192934932.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:46
Heat of formation + Delta-G solvation = -153.086083 kcal
Electronic energy + Delta-G solvation = -22809.585387 eV
Core-core repulsion = 19153.580322 eV
Total energy + Delta-G solvation = -3656.005065 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.043 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-40.46472 -37.91960 -36.35034 -35.69258 -34.95133 -34.35846 -33.28235 -31.75435
-29.53650 -27.62071 -26.38646 -24.54592 -22.83229 -21.21554 -20.09554 -18.88613
-18.44184 -17.83609 -17.02884 -16.82907 -16.43471 -15.70989 -15.01965 -14.89906
-14.38427 -13.96061 -13.91029 -13.74607 -13.70845 -13.21160 -12.90344 -12.72309
-12.31599 -12.17838 -12.05500 -11.83892 -11.64343 -11.47087 -11.31400 -11.05628
-10.74359 -10.68667 -10.66776 -10.60473 -10.51900 -10.48091 -10.08259 -9.40425
-9.09300 -8.01310 -7.77372 -6.89347 -5.55617 1.34299 1.52791 1.74459
2.08851 2.37235 2.45226 3.00078 3.06567 3.08223 3.14056 3.90567
4.28338 4.47465 4.83624 4.86178 4.96051 5.06156 5.18027 5.25486
5.35856 5.52899 5.62715 5.65014 5.67549 5.73818 5.84710 5.87026
5.97891 6.23031 6.41990 6.46177 6.60933 7.13410 7.20414 7.75657
7.87280 8.68582 10.05173
Molecular weight = 319.04amu
Principal moments of inertia in cm(-1)
A = 0.016741 B = 0.005121 C = 0.004451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1672.117899 B = 5466.309604 C = 6289.123305
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.055 3.945
3 O -0.346 6.346
4 C 0.548 3.452
5 O -0.498 6.498
6 C -0.239 4.239
7 C -0.039 4.039
8 C -0.094 4.094
9 C -0.281 4.281
10 S 0.276 5.724
11 C 0.119 3.881
12 N -1.027 6.027
13 S 2.673 3.327
14 O -0.974 6.974
15 O -0.981 6.981
16 C -1.011 5.011
17 H 0.111 0.889
18 C 0.137 3.863
19 N -0.840 5.840
20 Si 0.926 3.074
21 H -0.265 1.265
22 H -0.272 1.272
23 H -0.257 1.257
24 H 0.077 0.923
25 H 0.066 0.934
26 H 0.068 0.932
27 H 0.067 0.933
28 H 0.066 0.934
29 H 0.073 0.927
30 H 0.061 0.939
31 H 0.072 0.928
32 H 0.170 0.830
33 H 0.417 0.583
34 H 0.295 0.705
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.868 -4.241 13.536 14.997
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.020 4.020
3 O -0.263 6.263
4 C 0.390 3.610
5 O -0.385 6.385
6 C -0.258 4.258
7 C -0.051 4.051
8 C -0.153 4.153
9 C -0.417 4.417
10 S 0.538 5.462
11 C -0.103 4.103
12 N -0.765 5.765
13 S 2.775 3.225
14 O -0.964 6.964
15 O -0.972 6.972
16 C -1.146 5.146
17 H 0.129 0.871
18 C -0.082 4.082
19 N -0.469 5.469
20 Si 0.749 3.251
21 H -0.190 1.190
22 H -0.197 1.197
23 H -0.181 1.181
24 H 0.096 0.904
25 H 0.085 0.915
26 H 0.087 0.913
27 H 0.086 0.914
28 H 0.085 0.915
29 H 0.091 0.909
30 H 0.080 0.920
31 H 0.091 0.909
32 H 0.187 0.813
33 H 0.250 0.750
34 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -4.829 -2.757 11.778 13.025
hybrid contribution 0.756 -1.943 0.797 2.232
sum -4.073 -4.700 12.575 14.029
Atomic orbital electron populations
1.21803 0.92608 1.02778 1.03650 1.22679 0.95557 0.81288 1.02451
1.86344 1.24469 1.31622 1.83824 1.20345 0.80130 0.89089 0.71410
1.90872 1.60404 1.42589 1.44680 1.18648 1.19027 0.95883 0.92259
1.19140 0.99556 0.92757 0.93687 1.20489 1.02311 1.00878 0.91603
1.25182 1.14079 1.01493 1.00928 1.84544 1.59296 1.05252 0.97118
1.21606 1.00429 1.00429 0.87883 1.53963 1.74827 1.31323 1.16362
1.02035 0.77952 0.72212 0.70281 1.93439 1.80144 1.39389 1.83409
1.93432 1.87674 1.71534 1.44536 1.30255 1.16737 1.45475 1.22163
0.87081 1.24736 1.01848 0.90115 0.91547 1.69879 1.38578 1.26827
1.11581 0.86061 0.80611 0.78501 0.79970 1.19012 1.19704 1.18098
0.90409 0.91502 0.91333 0.91434 0.91548 0.90862 0.91956 0.90895
0.81289 0.74973 0.89443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 43.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 10.28 37.15 0.38 -0.97 16
2 C 0.05 0.66 6.10 37.15 0.23 0.88 16
3 O -0.35 -5.36 10.12 -41.06 -0.42 -5.78 16
4 C 0.55 9.69 6.22 33.95 0.21 9.90 16
5 O -0.50 -9.61 16.89 -19.39 -0.33 -9.94 16
6 C -0.24 -4.33 5.87 -104.41 -0.61 -4.94 16
7 C -0.04 -0.60 6.00 -103.95 -0.62 -1.22 16
8 C -0.09 -1.07 9.96 36.00 0.36 -0.72 16
9 C -0.28 -4.07 10.87 28.81 0.31 -3.75 16
10 S 0.28 5.11 20.05 -107.50 -2.16 2.95 16
11 C 0.12 2.38 6.88 -15.04 -0.10 2.28 16
12 N -1.03 -21.96 5.82 30.96 0.18 -21.78 16
13 S 2.67 69.24 4.60 -107.50 -0.49 68.74 16
14 O -0.97 -26.53 16.35 -57.17 -0.93 -27.46 16
15 O -0.98 -28.06 18.02 -57.17 -1.03 -29.09 16
16 C -1.01 -26.50 8.92 30.60 0.27 -26.22 16
17 H 0.11 2.69 7.81 -52.49 -0.41 2.28 16
18 C 0.14 3.61 5.46 -17.81 -0.10 3.52 16
19 N -0.84 -23.34 13.19 55.43 0.73 -22.61 16
20 Si 0.93 19.62 29.54 -169.99 -5.02 14.59 16
21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16
22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16
24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16
26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16
28 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16
29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
30 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16
31 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16
32 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16
33 H 0.42 8.04 8.29 -34.47 -0.29 7.75 16
34 H 0.30 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 329.59 15.07 4.97 4.97
Total: -1.00 -33.36 329.59 -7.79 -41.15
By element:
Atomic # 1 Polarization: 9.09 SS G_CDS: -3.61 Total: 5.48 kcal
Atomic # 6 Polarization: -21.57 SS G_CDS: 0.33 Total: -21.24 kcal
Atomic # 7 Polarization: -45.30 SS G_CDS: 0.91 Total: -44.38 kcal
Atomic # 8 Polarization: -69.55 SS G_CDS: -2.71 Total: -72.26 kcal
Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal
Atomic # 16 Polarization: 74.34 SS G_CDS: -2.65 Total: 71.69 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -33.36 -7.79 -41.15 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192934932.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -111.937 kcal
(2) G-P(sol) polarization free energy of solvation -33.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) -153.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds