Wall clock time and date at job start Tue Mar 31 2020 12:54:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42898 * 109.47164 * 2 1
4 4 C 1.34908 * 117.00199 * 179.97438 * 3 2 1
5 5 O 1.21663 * 119.99971 * 0.02562 * 4 3 2
6 6 C 1.46251 * 120.00177 * 180.02562 * 4 3 2
7 7 C 1.44799 * 123.63968 * 90.20790 * 6 4 3
8 8 C 1.50699 * 123.40924 * 0.02562 * 7 6 4
9 9 C 1.32394 * 113.18192 * 180.24569 * 7 6 4
10 10 S 1.75454 * 110.88403 * 359.77642 * 9 7 6
11 11 C 1.37337 * 123.64024 * 270.02983 * 6 4 3
12 12 N 1.38129 * 124.67334 * 0.03262 * 11 6 4
13 13 S 1.65606 * 120.00107 * 179.72554 * 12 11 6
14 14 O 1.42105 * 106.40008 * 311.45849 * 13 12 11
15 15 O 1.42098 * 106.40370 * 178.54035 * 13 12 11
16 16 C 1.76193 * 107.21910 * 65.00005 * 13 12 11
17 17 H 1.08002 * 120.00351 * 0.02562 * 16 13 12
18 18 C 1.37881 * 120.00314 * 180.02562 * 16 13 12
19 19 N 1.31523 * 119.99660 * 359.97438 * 18 16 13
20 20 Si 1.86796 * 120.00522 * 179.97438 * 18 16 13
21 21 H 1.48502 * 109.46991 * 89.99398 * 20 18 16
22 22 H 1.48494 * 109.47334 * 210.00187 * 20 18 16
23 23 H 1.48506 * 109.46800 * 329.99864 * 20 18 16
24 24 H 1.08998 * 109.47107 * 179.97438 * 1 2 3
25 25 H 1.09008 * 109.46724 * 299.99373 * 1 2 3
26 26 H 1.08996 * 109.47516 * 59.99424 * 1 2 3
27 27 H 1.09003 * 109.47115 * 240.00415 * 2 1 3
28 28 H 1.09004 * 109.47648 * 120.00311 * 2 1 3
29 29 H 1.09000 * 109.47582 * 270.22133 * 8 7 6
30 30 H 1.08997 * 109.47256 * 30.22677 * 8 7 6
31 31 H 1.09004 * 109.46803 * 150.22638 * 8 7 6
32 32 H 1.07994 * 124.56209 * 179.77432 * 9 7 6
33 33 H 0.97002 * 120.00283 * 359.72807 * 12 11 6
34 34 H 0.96997 * 119.99726 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3437 1.5241 0.0005
5 8 4.0849 0.5592 0.0005
6 6 3.9027 2.8755 0.0011
7 6 4.2129 3.6147 1.2070
8 6 3.9930 3.0692 2.5944
9 6 4.7050 4.8202 0.9672
10 16 4.8223 5.1161 -0.7582
11 6 4.1934 3.5791 -1.1419
12 7 3.9976 3.1083 -2.4257
13 16 4.3835 4.0603 -3.7246
14 8 3.8007 5.3324 -3.4771
15 8 4.1027 3.2892 -4.8847
16 6 6.1290 4.2987 -3.6962
17 1 6.7231 3.8478 -2.9150
18 6 6.7368 5.0609 -4.6713
19 7 6.0135 5.6096 -5.6229
20 14 8.5872 5.3143 -4.6408
21 1 9.2472 4.2371 -5.4213
22 1 8.9163 6.6326 -5.2399
23 1 9.0691 5.2746 -3.2367
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5139 -0.8899
27 1 1.8933 -0.5138 -0.8900
28 1 1.8934 -0.5139 0.8900
29 1 2.9888 3.3266 2.9312
30 1 4.1047 1.9850 2.5805
31 1 4.7264 3.5013 3.2752
32 1 4.9952 5.5265 1.7309
33 1 3.6339 2.2201 -2.5664
34 1 6.4411 6.1456 -6.3091
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192934932.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:45
Heat of formation + Delta-G solvation = -177.461074 kcal
Electronic energy + Delta-G solvation = -22810.642366 eV
Core-core repulsion = 19153.580322 eV
Total energy + Delta-G solvation = -3657.062044 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.043 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-41.79237 -39.24975 -37.79553 -37.66574 -36.55360 -36.37287 -35.27348 -32.68516
-30.78305 -28.77458 -28.41979 -25.82849 -23.88502 -22.49561 -21.81302 -20.46988
-20.06118 -19.34334 -18.78459 -18.26334 -17.90205 -17.26406 -16.80051 -16.30184
-16.11334 -15.83803 -15.21165 -14.94015 -14.89858 -14.30486 -14.10289 -13.91863
-13.68483 -13.65096 -13.41215 -13.16951 -13.06274 -12.99947 -12.81632 -12.76110
-12.63309 -12.55055 -12.30615 -12.00412 -11.95258 -11.55089 -11.48523 -11.29199
-11.07173 -9.43305 -9.19598 -8.83940 -7.61614 -0.21302 -0.05717 0.13069
0.72187 1.09266 1.19839 1.35243 1.35775 1.53176 1.83466 2.15631
2.48070 2.53347 3.32644 3.73315 3.80346 3.94931 4.02055 4.04779
4.13381 4.28950 4.36659 4.58303 4.66805 4.79918 4.84827 4.88852
4.96964 5.06280 5.18580 5.27935 5.31394 5.44392 5.58311 5.77559
6.54324 6.67359 8.12632
Molecular weight = 319.04amu
Principal moments of inertia in cm(-1)
A = 0.016741 B = 0.005121 C = 0.004451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1672.117899 B = 5466.309604 C = 6289.123305
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.043 3.957
3 O -0.348 6.348
4 C 0.549 3.451
5 O -0.521 6.521
6 C -0.231 4.231
7 C -0.051 4.051
8 C -0.090 4.090
9 C -0.243 4.243
10 S 0.222 5.778
11 C 0.079 3.921
12 N -1.025 6.025
13 S 2.683 3.317
14 O -0.998 6.998
15 O -1.021 7.021
16 C -1.023 5.023
17 H 0.124 0.876
18 C 0.082 3.918
19 N -0.885 5.885
20 Si 0.990 3.010
21 H -0.258 1.258
22 H -0.257 1.257
23 H -0.242 1.242
24 H 0.105 0.895
25 H 0.074 0.926
26 H 0.061 0.939
27 H 0.063 0.937
28 H 0.078 0.922
29 H 0.091 0.909
30 H 0.054 0.946
31 H 0.102 0.898
32 H 0.215 0.785
33 H 0.422 0.578
34 H 0.304 0.696
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.085 -4.324 16.320 17.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.031 4.031
3 O -0.265 6.265
4 C 0.392 3.608
5 O -0.410 6.410
6 C -0.252 4.252
7 C -0.062 4.062
8 C -0.149 4.149
9 C -0.378 4.378
10 S 0.484 5.516
11 C -0.141 4.141
12 N -0.767 5.767
13 S 2.786 3.214
14 O -0.987 6.987
15 O -1.012 7.012
16 C -1.159 5.159
17 H 0.142 0.858
18 C -0.133 4.133
19 N -0.515 5.515
20 Si 0.807 3.193
21 H -0.182 1.182
22 H -0.180 1.180
23 H -0.165 1.165
24 H 0.123 0.877
25 H 0.093 0.907
26 H 0.080 0.920
27 H 0.081 0.919
28 H 0.096 0.904
29 H 0.110 0.890
30 H 0.073 0.927
31 H 0.121 0.879
32 H 0.232 0.768
33 H 0.257 0.743
34 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -4.089 -2.836 14.577 15.403
hybrid contribution 0.391 -2.002 0.087 2.041
sum -3.698 -4.838 14.664 15.878
Atomic orbital electron populations
1.21839 0.90037 1.04609 1.03701 1.23082 0.97561 0.79646 1.02836
1.86337 1.23095 1.33846 1.83195 1.20348 0.80796 0.88725 0.70935
1.90857 1.61060 1.43074 1.45985 1.19164 1.17221 0.95847 0.92930
1.19603 0.99425 0.92710 0.94457 1.20598 1.04393 1.00405 0.89490
1.25562 1.11857 1.01774 0.98649 1.84638 1.60061 1.05613 1.01269
1.21778 1.03426 1.01487 0.87428 1.53253 1.75754 1.31169 1.16518
1.01448 0.78131 0.71726 0.70119 1.93392 1.80634 1.40727 1.83991
1.93369 1.88233 1.72321 1.47259 1.30483 1.16857 1.45754 1.22761
0.85839 1.25930 1.07249 0.89347 0.90761 1.69956 1.40978 1.27921
1.12688 0.85128 0.73938 0.79276 0.80961 1.18205 1.18050 1.16516
0.87664 0.90704 0.91999 0.91899 0.90393 0.89015 0.92715 0.87903
0.76816 0.74336 0.88563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16
2 C 0.04 0.97 6.10 71.98 0.44 1.41 16
3 O -0.35 -10.55 10.12 -58.23 -0.59 -11.14 16
4 C 0.55 19.12 6.22 69.90 0.43 19.56 16
5 O -0.52 -19.92 16.89 19.30 0.33 -19.60 16
6 C -0.23 -8.18 5.87 -19.73 -0.12 -8.30 16
7 C -0.05 -1.41 6.00 -19.29 -0.12 -1.52 16
8 C -0.09 -1.71 9.96 71.24 0.71 -1.01 16
9 C -0.24 -6.31 10.87 66.72 0.73 -5.58 16
10 S 0.22 8.15 20.05 -56.49 -1.13 7.02 16
11 C 0.08 3.18 6.88 83.49 0.57 3.76 16
12 N -1.03 -45.40 5.82 -55.96 -0.33 -45.72 16
13 S 2.68 144.25 4.60 -56.49 -0.26 143.99 16
14 O -1.00 -56.57 16.35 -128.00 -2.09 -58.67 16
15 O -1.02 -61.06 18.02 -128.00 -2.31 -63.37 16
16 C -1.02 -54.55 8.92 67.74 0.60 -53.94 16
17 H 0.12 6.05 7.81 -2.91 -0.02 6.03 16
18 C 0.08 4.35 5.46 84.65 0.46 4.81 16
19 N -0.88 -50.25 13.19 21.45 0.28 -49.97 16
20 Si 0.99 39.41 29.54 68.60 2.03 41.44 16
21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16
22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16
23 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16
24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
25 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16
26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
27 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16
28 H 0.08 1.61 8.13 -2.38 -0.02 1.59 16
29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
30 H 0.05 1.15 7.70 -2.39 -0.02 1.13 16
31 H 0.10 1.37 8.13 -2.38 -0.02 1.35 16
32 H 0.22 3.53 8.06 -2.91 -0.02 3.51 16
33 H 0.42 17.09 8.29 -96.74 -0.80 16.29 16
34 H 0.30 15.39 8.31 -92.71 -0.77 14.62 16
Total: -1.00 -74.70 329.59 0.73 -73.97
By element:
Atomic # 1 Polarization: 24.10 SS G_CDS: 0.35 Total: 24.44 kcal
Atomic # 6 Polarization: -46.85 SS G_CDS: 4.46 Total: -42.39 kcal
Atomic # 7 Polarization: -95.65 SS G_CDS: -0.04 Total: -95.69 kcal
Atomic # 8 Polarization: -148.11 SS G_CDS: -4.66 Total: -152.77 kcal
Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal
Atomic # 16 Polarization: 152.40 SS G_CDS: -1.39 Total: 151.00 kcal
Total: -74.70 0.73 -73.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192934932.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -103.493 kcal
(2) G-P(sol) polarization free energy of solvation -74.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.461 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds