Wall clock time and date at job start Tue Mar 31 2020 12:15:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99886 * 2 1
4 4 H 1.48500 * 109.47000 * 270.00291 * 3 2 1
5 5 H 1.48506 * 109.47078 * 29.99979 * 3 2 1
6 6 H 1.48496 * 109.46924 * 150.00416 * 3 2 1
7 7 C 1.37875 * 120.00016 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00360 * 359.97438 * 7 2 1
9 9 S 1.76202 * 120.00017 * 179.97438 * 7 2 1
10 10 O 1.42099 * 106.40254 * 66.45592 * 9 7 2
11 11 O 1.42096 * 106.39897 * 293.53656 * 9 7 2
12 12 N 1.65597 * 107.21648 * 179.97438 * 9 7 2
13 13 C 1.39889 * 120.00393 * 66.55946 * 12 9 7
14 14 C 1.39002 * 120.05314 * 68.71838 * 13 12 9
15 15 Cl 1.73606 * 120.03348 * 0.05007 * 14 13 12
16 16 C 1.38181 * 119.93378 * 180.02562 * 14 13 12
17 17 C 1.38493 * 120.03728 * 359.95827 * 16 14 13
18 18 F 1.35099 * 119.94734 * 180.02562 * 17 16 14
19 19 C 1.38439 * 120.10189 * 0.02562 * 17 16 14
20 20 C 1.38171 * 120.06743 * 359.97438 * 19 17 16
21 21 C 1.50704 * 120.01515 * 179.72606 * 20 19 17
22 22 C 1.53006 * 117.49865 * 8.62438 * 21 20 19
23 23 C 1.52998 * 117.50155 * 300.00152 * 21 20 19
24 24 H 0.96991 * 120.00256 * 359.97438 * 1 2 3
25 25 H 0.97004 * 119.99434 * 246.55156 * 12 9 7
26 26 H 1.07997 * 119.98132 * 179.97438 * 16 14 13
27 27 H 1.07999 * 119.96191 * 180.02562 * 19 17 16
28 28 H 1.08996 * 115.54723 * 154.33085 * 21 20 19
29 29 H 1.08993 * 117.49771 * 0.02562 * 22 21 20
30 30 H 1.09000 * 117.49754 * 145.02117 * 22 21 20
31 31 H 1.08997 * 117.49861 * 214.98209 * 23 21 20
32 32 H 1.09008 * 117.49478 * 359.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4401 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 16 3.7666 -1.1940 -0.0012
10 8 4.1683 -0.6498 1.2484
11 8 4.1673 -0.6494 -1.2510
12 7 4.2567 -2.7758 -0.0011
13 6 4.0030 -3.5869 -1.1122
14 6 4.6641 -3.3507 -2.3119
15 17 5.8068 -2.0493 -2.4328
16 6 4.4113 -4.1530 -3.4081
17 6 3.5007 -5.1921 -3.3114
18 9 3.2553 -5.9757 -4.3842
19 6 2.8417 -5.4289 -2.1172
20 6 3.0913 -4.6292 -1.0184
21 6 2.3686 -4.8842 0.2792
22 6 1.5270 -6.1579 0.3807
23 6 0.8413 -4.7949 0.2667
24 1 -0.4850 0.8399 0.0004
25 1 4.7199 -3.1399 0.7696
26 1 4.9242 -3.9700 -4.3408
27 1 2.1324 -6.2400 -2.0442
28 1 2.8850 -4.5488 1.1786
29 1 1.4963 -6.8116 -0.4909
30 1 1.4896 -6.6608 1.3471
31 1 0.3529 -4.4011 1.1580
32 1 0.3592 -4.5513 -0.6801
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192985367.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:55
Heat of formation + Delta-G solvation = -66.411261 kcal
Electronic energy + Delta-G solvation = -23067.858088 eV
Core-core repulsion = 19290.107514 eV
Total energy + Delta-G solvation = -3777.750574 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 319.023 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-48.87428 -39.81696 -36.90764 -35.72879 -35.62744 -34.48792 -34.39848 -33.02450
-30.50215 -28.41176 -26.40861 -24.25842 -22.56962 -21.98153 -20.44772 -19.26614
-17.92837 -17.72379 -17.05748 -16.76885 -16.42699 -15.57264 -15.18123 -15.16387
-14.57040 -14.29370 -14.01785 -13.70193 -13.30882 -13.24117 -12.89793 -12.78665
-11.94750 -11.74589 -11.63175 -11.51199 -11.29129 -11.13323 -10.87639 -10.82344
-10.59453 -10.36294 -10.24080 -9.96843 -9.90934 -9.62589 -9.21538 -8.93278
-8.51483 -8.11510 -6.80804 -5.33997 1.02332 1.11015 1.98493 2.41764
3.06207 3.17420 3.25880 3.38340 3.94376 4.07032 4.13973 4.27781
4.55047 4.59811 4.89139 5.00014 5.09820 5.17095 5.21100 5.23847
5.43886 5.69552 5.78159 5.83507 6.00939 6.12988 6.19159 6.22222
6.28663 6.38421 6.50226 6.80274 7.46807 7.54185 8.23568 8.70501
10.31050
Molecular weight = 319.02amu
Principal moments of inertia in cm(-1)
A = 0.013752 B = 0.007131 C = 0.005687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.555657 B = 3925.360265 C = 4922.040046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.821 5.821
2 C 0.157 3.843
3 Si 0.798 3.202
4 H -0.246 1.246
5 H -0.257 1.257
6 H -0.222 1.222
7 C -1.011 5.011
8 H 0.128 0.872
9 S 2.659 3.341
10 O -1.003 7.003
11 O -0.985 6.985
12 N -1.065 6.065
13 C 0.164 3.836
14 C -0.003 4.003
15 Cl -0.017 7.017
16 C -0.149 4.149
17 C 0.110 3.890
18 F -0.136 7.136
19 C -0.151 4.151
20 C -0.006 4.006
21 C -0.117 4.117
22 C -0.181 4.181
23 C -0.149 4.149
24 H 0.280 0.720
25 H 0.415 0.585
26 H 0.147 0.853
27 H 0.143 0.857
28 H 0.120 0.880
29 H 0.096 0.904
30 H 0.098 0.902
31 H 0.104 0.896
32 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.243 -11.664 -2.661 13.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C -0.063 4.063
3 Si 0.619 3.381
4 H -0.169 1.169
5 H -0.181 1.181
6 H -0.144 1.144
7 C -1.146 5.146
8 H 0.146 0.854
9 S 2.762 3.238
10 O -0.994 6.994
11 O -0.975 6.975
12 N -0.815 5.815
13 C 0.067 3.933
14 C -0.033 4.033
15 Cl 0.013 6.987
16 C -0.170 4.170
17 C 0.090 3.910
18 F -0.115 7.115
19 C -0.170 4.170
20 C -0.010 4.010
21 C -0.135 4.135
22 C -0.218 4.218
23 C -0.186 4.186
24 H 0.090 0.910
25 H 0.251 0.749
26 H 0.165 0.835
27 H 0.161 0.839
28 H 0.138 0.862
29 H 0.114 0.886
30 H 0.116 0.884
31 H 0.123 0.877
32 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 5.699 -10.635 -2.808 12.388
hybrid contribution -0.247 0.366 0.095 0.452
sum 5.452 -10.269 -2.713 11.939
Atomic orbital electron populations
1.69975 1.06475 1.28937 1.39622 1.24354 0.94715 0.98552 0.88639
0.87911 0.83534 0.84809 0.81877 1.16925 1.18077 1.14389 1.30401
1.15078 1.02474 1.66616 0.85433 1.02102 0.77700 0.70111 0.73860
1.93486 1.85692 1.74788 1.45408 1.93554 1.84533 1.75205 1.44205
1.53447 1.73697 1.31341 1.22984 1.16729 0.95904 0.93720 0.86965
1.21027 0.95122 0.92681 0.94482 1.98422 1.56813 1.45432 1.98039
1.20793 1.00967 0.95821 0.99376 1.17310 0.98249 0.91513 0.83964
1.91496 1.93247 1.72860 1.53898 1.20902 1.02512 1.02383 0.91224
1.19074 0.93835 0.93754 0.94319 1.20871 0.93977 1.02939 0.95745
1.23119 1.04618 0.90881 1.03178 1.23032 0.92696 0.98251 1.04619
0.90971 0.74868 0.83542 0.83934 0.86191 0.88593 0.88395 0.87723
0.88121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -22.99 13.96 55.43 0.77 -22.21 16
2 C 0.16 4.38 5.47 -17.82 -0.10 4.28 16
3 Si 0.80 20.27 26.54 -169.99 -4.51 15.76 16
4 H -0.25 -6.13 7.11 56.52 0.40 -5.72 16
5 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16
6 H -0.22 -5.75 5.61 56.52 0.32 -5.43 16
7 C -1.01 -27.04 10.25 30.60 0.31 -26.73 16
8 H 0.13 3.38 7.39 -52.48 -0.39 2.99 16
9 S 2.66 64.11 4.14 -107.50 -0.45 63.67 16
10 O -1.00 -26.21 16.02 -57.17 -0.92 -27.13 16
11 O -0.99 -24.80 12.46 -57.17 -0.71 -25.51 16
12 N -1.07 -19.80 4.40 32.45 0.14 -19.66 16
13 C 0.16 2.88 5.91 -83.69 -0.49 2.39 16
14 C 0.00 -0.05 6.05 -39.32 -0.24 -0.29 16
15 Cl -0.02 -0.30 24.75 -51.86 -1.28 -1.59 16
16 C -0.15 -2.22 9.80 -39.51 -0.39 -2.60 16
17 C 0.11 1.55 7.30 -39.41 -0.29 1.27 16
18 F -0.14 -1.84 17.26 2.25 0.04 -1.80 16
19 C -0.15 -2.08 9.27 -39.53 -0.37 -2.44 16
20 C -0.01 -0.10 5.63 -104.44 -0.59 -0.69 16
21 C -0.12 -1.67 5.71 -91.77 -0.52 -2.19 16
22 C -0.18 -2.04 9.86 -26.73 -0.26 -2.30 16
23 C -0.15 -2.15 9.51 -26.73 -0.25 -2.40 16
24 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16
25 H 0.42 6.35 8.87 -34.46 -0.31 6.04 16
26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16
27 H 0.14 1.61 6.02 -52.49 -0.32 1.30 16
28 H 0.12 1.67 7.63 -51.93 -0.40 1.27 16
29 H 0.10 0.94 6.18 -51.93 -0.32 0.62 16
30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16
32 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16
LS Contribution 300.99 15.07 4.54 4.54
Total: -1.00 -31.01 300.99 -8.20 -39.21
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: -2.64 Total: 6.43 kcal
Atomic # 6 Polarization: -28.52 SS G_CDS: -3.19 Total: -31.71 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: 0.92 Total: -41.87 kcal
Atomic # 8 Polarization: -51.01 SS G_CDS: -1.63 Total: -52.64 kcal
Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -4.51 Total: 15.76 kcal
Atomic # 16 Polarization: 64.11 SS G_CDS: -0.45 Total: 63.67 kcal
Atomic # 17 Polarization: -0.30 SS G_CDS: -1.28 Total: -1.59 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -31.01 -8.20 -39.21 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192985367.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.199 kcal
(2) G-P(sol) polarization free energy of solvation -31.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds