Wall clock time and date at job start Tue Mar 31 2020 12:15:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99886 * 2 1
4 4 H 1.48500 * 109.47000 * 270.00291 * 3 2 1
5 5 H 1.48506 * 109.47078 * 29.99979 * 3 2 1
6 6 H 1.48496 * 109.46924 * 150.00416 * 3 2 1
7 7 C 1.37875 * 120.00016 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00360 * 359.97438 * 7 2 1
9 9 S 1.76202 * 120.00017 * 179.97438 * 7 2 1
10 10 O 1.42099 * 106.40254 * 66.45592 * 9 7 2
11 11 O 1.42096 * 106.39897 * 293.53656 * 9 7 2
12 12 N 1.65597 * 107.21648 * 179.97438 * 9 7 2
13 13 C 1.39889 * 120.00393 * 66.55946 * 12 9 7
14 14 C 1.39002 * 120.05314 * 68.71838 * 13 12 9
15 15 Cl 1.73606 * 120.03348 * 0.05007 * 14 13 12
16 16 C 1.38181 * 119.93378 * 180.02562 * 14 13 12
17 17 C 1.38493 * 120.03728 * 359.95827 * 16 14 13
18 18 F 1.35099 * 119.94734 * 180.02562 * 17 16 14
19 19 C 1.38439 * 120.10189 * 0.02562 * 17 16 14
20 20 C 1.38171 * 120.06743 * 359.97438 * 19 17 16
21 21 C 1.50704 * 120.01515 * 179.72606 * 20 19 17
22 22 C 1.53006 * 117.49865 * 8.62438 * 21 20 19
23 23 C 1.52998 * 117.50155 * 300.00152 * 21 20 19
24 24 H 0.96991 * 120.00256 * 359.97438 * 1 2 3
25 25 H 0.97004 * 119.99434 * 246.55156 * 12 9 7
26 26 H 1.07997 * 119.98132 * 179.97438 * 16 14 13
27 27 H 1.07999 * 119.96191 * 180.02562 * 19 17 16
28 28 H 1.08996 * 115.54723 * 154.33085 * 21 20 19
29 29 H 1.08993 * 117.49771 * 0.02562 * 22 21 20
30 30 H 1.09000 * 117.49754 * 145.02117 * 22 21 20
31 31 H 1.08997 * 117.49861 * 214.98209 * 23 21 20
32 32 H 1.09008 * 117.49478 * 359.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4401 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1294 -0.0005
9 16 3.7666 -1.1940 -0.0012
10 8 4.1683 -0.6498 1.2484
11 8 4.1673 -0.6494 -1.2510
12 7 4.2567 -2.7758 -0.0011
13 6 4.0030 -3.5869 -1.1122
14 6 4.6641 -3.3507 -2.3119
15 17 5.8068 -2.0493 -2.4328
16 6 4.4113 -4.1530 -3.4081
17 6 3.5007 -5.1921 -3.3114
18 9 3.2553 -5.9757 -4.3842
19 6 2.8417 -5.4289 -2.1172
20 6 3.0913 -4.6292 -1.0184
21 6 2.3686 -4.8842 0.2792
22 6 1.5270 -6.1579 0.3807
23 6 0.8413 -4.7949 0.2667
24 1 -0.4850 0.8399 0.0004
25 1 4.7199 -3.1399 0.7696
26 1 4.9242 -3.9700 -4.3408
27 1 2.1324 -6.2400 -2.0442
28 1 2.8850 -4.5488 1.1786
29 1 1.4963 -6.8116 -0.4909
30 1 1.4896 -6.6608 1.3471
31 1 0.3529 -4.4011 1.1580
32 1 0.3592 -4.5513 -0.6801
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192985367.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:55
Heat of formation + Delta-G solvation = -86.665917 kcal
Electronic energy + Delta-G solvation = -23068.736396 eV
Core-core repulsion = 19290.107514 eV
Total energy + Delta-G solvation = -3778.628882 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 319.023 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-49.98990 -41.02947 -38.11597 -37.57362 -36.99914 -36.43079 -35.84883 -35.11215
-31.67455 -29.72157 -28.48574 -25.40465 -23.78008 -23.06544 -21.58691 -21.12946
-19.64062 -19.12384 -18.68631 -18.29929 -17.72929 -17.14054 -16.67034 -16.26462
-16.02377 -15.70732 -15.48975 -15.30011 -14.95624 -14.71513 -14.54313 -14.18973
-13.53562 -13.45911 -13.08761 -13.01265 -12.78120 -12.65229 -12.55368 -12.35714
-12.16071 -11.89993 -11.74132 -11.34561 -11.31272 -11.29983 -11.14303 -10.79352
-9.71181 -9.44148 -8.91166 -7.44201 -0.31533 -0.07660 0.24506 1.05515
1.10528 1.15330 1.22233 1.90871 2.19351 2.43335 2.49385 3.02562
3.12057 3.31486 3.43123 3.81917 3.84588 3.94098 4.07432 4.13971
4.15858 4.32204 4.60486 4.68773 4.78492 4.89829 4.92972 5.10343
5.14010 5.29042 5.35740 5.43659 5.62014 6.12714 6.15911 6.60763
8.25310
Molecular weight = 319.02amu
Principal moments of inertia in cm(-1)
A = 0.013752 B = 0.007131 C = 0.005687
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.555657 B = 3925.360265 C = 4922.040046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.848 5.848
2 C 0.118 3.882
3 Si 0.817 3.183
4 H -0.241 1.241
5 H -0.227 1.227
6 H -0.232 1.232
7 C -1.028 5.028
8 H 0.120 0.880
9 S 2.680 3.320
10 O -1.027 7.027
11 O -0.997 6.997
12 N -1.051 6.051
13 C 0.135 3.865
14 C -0.019 4.019
15 Cl -0.033 7.033
16 C -0.148 4.148
17 C 0.118 3.882
18 F -0.128 7.128
19 C -0.142 4.142
20 C -0.007 4.007
21 C -0.139 4.139
22 C -0.140 4.140
23 C -0.173 4.173
24 H 0.288 0.712
25 H 0.429 0.571
26 H 0.167 0.833
27 H 0.173 0.827
28 H 0.118 0.882
29 H 0.118 0.882
30 H 0.120 0.880
31 H 0.093 0.907
32 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.309 -13.422 -3.165 14.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.479 5.479
2 C -0.099 4.099
3 Si 0.635 3.365
4 H -0.165 1.165
5 H -0.149 1.149
6 H -0.155 1.155
7 C -1.161 5.161
8 H 0.138 0.862
9 S 2.782 3.218
10 O -1.018 7.018
11 O -0.987 6.987
12 N -0.805 5.805
13 C 0.038 3.962
14 C -0.050 4.050
15 Cl -0.004 7.004
16 C -0.168 4.168
17 C 0.098 3.902
18 F -0.107 7.107
19 C -0.162 4.162
20 C -0.010 4.010
21 C -0.157 4.157
22 C -0.176 4.176
23 C -0.210 4.210
24 H 0.099 0.901
25 H 0.268 0.732
26 H 0.185 0.815
27 H 0.190 0.810
28 H 0.136 0.864
29 H 0.136 0.864
30 H 0.138 0.862
31 H 0.112 0.888
32 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 5.742 -12.384 -3.300 14.044
hybrid contribution -0.284 0.746 0.194 0.821
sum 5.458 -11.638 -3.106 13.225
Atomic orbital electron populations
1.69997 1.07156 1.30074 1.40658 1.24969 0.95421 1.00744 0.88803
0.87614 0.82862 0.83673 0.82361 1.16458 1.14899 1.15493 1.30890
1.17289 1.02154 1.65775 0.86159 1.01334 0.76278 0.71196 0.73018
1.93446 1.85522 1.76428 1.46378 1.93537 1.84110 1.76532 1.44499
1.52770 1.73454 1.29993 1.24251 1.16994 0.97752 0.94751 0.86689
1.21177 0.95587 0.92986 0.95210 1.98409 1.57440 1.46454 1.98079
1.20998 1.00973 0.95384 0.99477 1.17325 0.97591 0.91050 0.84233
1.91525 1.93082 1.72505 1.53558 1.21194 1.02241 1.02434 0.90286
1.19222 0.93154 0.93240 0.95412 1.20969 0.93588 1.05887 0.95235
1.23260 0.99755 0.89325 1.05296 1.22990 0.92730 1.01762 1.03558
0.90112 0.73165 0.81525 0.80960 0.86434 0.86393 0.86179 0.88846
0.89425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -47.80 13.96 21.45 0.30 -47.50 16
2 C 0.12 6.59 5.47 84.65 0.46 7.06 16
3 Si 0.82 40.75 26.54 68.60 1.82 42.57 16
4 H -0.24 -11.76 7.11 99.48 0.71 -11.05 16
5 H -0.23 -10.11 7.11 99.48 0.71 -9.40 16
6 H -0.23 -11.96 5.61 99.48 0.56 -11.41 16
7 C -1.03 -55.60 10.25 67.73 0.69 -54.90 16
8 H 0.12 6.51 7.39 -2.91 -0.02 6.49 16
9 S 2.68 129.52 4.14 -56.49 -0.23 129.29 16
10 O -1.03 -53.87 16.02 -128.00 -2.05 -55.92 16
11 O -1.00 -50.22 12.46 -128.00 -1.59 -51.81 16
12 N -1.05 -38.78 4.40 -51.25 -0.23 -39.00 16
13 C 0.13 4.62 5.91 38.17 0.23 4.84 16
14 C -0.02 -0.65 6.05 22.44 0.14 -0.51 16
15 Cl -0.03 -1.20 24.75 -2.72 -0.07 -1.26 16
16 C -0.15 -4.11 9.80 22.32 0.22 -3.89 16
17 C 0.12 3.01 7.30 22.38 0.16 3.18 16
18 F -0.13 -3.04 17.26 44.97 0.78 -2.26 16
19 C -0.14 -3.50 9.27 22.30 0.21 -3.30 16
20 C -0.01 -0.20 5.63 -19.74 -0.11 -0.31 16
21 C -0.14 -3.74 5.71 -11.54 -0.07 -3.80 16
22 C -0.14 -2.69 9.86 30.60 0.30 -2.39 16
23 C -0.17 -4.84 9.51 30.59 0.29 -4.55 16
24 H 0.29 14.80 8.31 -92.72 -0.77 14.03 16
25 H 0.43 13.00 8.87 -96.75 -0.86 12.14 16
26 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16
27 H 0.17 3.14 6.02 -2.91 -0.02 3.12 16
28 H 0.12 3.17 7.63 -2.39 -0.02 3.15 16
29 H 0.12 1.75 6.18 -2.39 -0.01 1.74 16
30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16
31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16
32 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16
Total: -1.00 -66.15 300.99 1.44 -64.71
By element:
Atomic # 1 Polarization: 19.59 SS G_CDS: 0.19 Total: 19.78 kcal
Atomic # 6 Polarization: -61.10 SS G_CDS: 2.52 Total: -58.58 kcal
Atomic # 7 Polarization: -86.58 SS G_CDS: 0.07 Total: -86.50 kcal
Atomic # 8 Polarization: -104.09 SS G_CDS: -3.64 Total: -107.73 kcal
Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal
Atomic # 14 Polarization: 40.75 SS G_CDS: 1.82 Total: 42.57 kcal
Atomic # 16 Polarization: 129.52 SS G_CDS: -0.23 Total: 129.29 kcal
Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.26 kcal
Total: -66.15 1.44 -64.71 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192985367.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.957 kcal
(2) G-P(sol) polarization free energy of solvation -66.145 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.666 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds