Wall clock time and date at job start Tue Mar 31 2020 11:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48499 * 109.47014 * 240.00123 * 3 2 1 5 5 H 1.48494 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46766 * 120.00409 * 3 2 1 7 7 C 1.37880 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99963 * 359.71930 * 7 2 1 10 10 O 1.42108 * 106.40282 * 305.01921 * 9 7 2 11 11 O 1.42106 * 106.40374 * 77.93393 * 9 7 2 12 12 N 1.65593 * 107.22025 * 191.47546 * 9 7 2 13 13 C 1.39674 * 120.00158 * 298.45134 * 12 9 7 14 14 C 1.38931 * 120.07345 * 313.56259 * 13 12 9 15 15 C 1.38086 * 119.92286 * 179.74508 * 14 13 12 16 16 C 1.38315 * 120.07039 * 0.53360 * 15 14 13 17 17 C 1.38260 * 120.15355 * 359.74670 * 16 15 14 18 18 C 1.50694 * 119.96440 * 180.02562 * 17 16 15 19 19 Br 1.96605 * 109.46930 * 269.97420 * 18 17 16 20 20 C 1.38127 * 120.07574 * 359.97271 * 17 16 15 21 21 H 0.97003 * 119.99961 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00207 * 118.44920 * 12 9 7 23 23 H 1.07996 * 120.03731 * 0.02562 * 14 13 12 24 24 H 1.07996 * 119.96487 * 180.25574 * 15 14 13 25 25 H 1.08000 * 119.92007 * 179.76629 * 16 15 14 26 26 H 1.09002 * 109.47089 * 29.96812 * 18 17 16 27 27 H 1.08994 * 109.47804 * 149.97326 * 18 17 16 28 28 H 1.08001 * 120.03735 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1237 -2.7200 0.0063 10 8 0.2503 -2.6741 1.1263 11 8 0.6706 -2.9277 -1.3245 12 7 2.2223 -3.9189 0.3187 13 6 3.2846 -4.1393 -0.5610 14 6 3.0545 -4.1966 -1.9299 15 6 4.1079 -4.4094 -2.7971 16 6 5.3891 -4.5763 -2.3035 17 6 5.6207 -4.5257 -0.9414 18 6 7.0184 -4.7075 -0.4082 19 35 7.3437 -6.6149 -0.0596 20 6 4.5725 -4.3074 -0.0687 21 1 -0.4850 0.8401 0.0004 22 1 2.1282 -4.4682 1.1126 23 1 2.0537 -4.0704 -2.3156 24 1 3.9304 -4.4499 -3.8616 25 1 6.2105 -4.7464 -2.9837 26 1 7.7374 -4.3447 -1.1427 27 1 7.1300 -4.1447 0.5184 28 1 4.7541 -4.2675 0.9952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:54 Heat of formation + Delta-G solvation = -72.663989 kcal Electronic energy + Delta-G solvation = -16794.317238 eV Core-core repulsion = 13789.495050 eV Total energy + Delta-G solvation = -3004.822188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.27486 -35.47038 -34.80371 -34.12548 -33.16099 -32.62051 -29.99426 -28.66946 -26.21070 -25.94722 -22.21224 -21.22392 -19.12182 -17.53631 -17.08592 -16.24938 -15.86254 -15.15818 -15.01970 -14.10362 -14.03142 -13.67278 -13.46684 -13.17406 -13.01548 -12.11714 -12.02521 -11.74666 -11.34458 -11.24858 -11.15486 -10.67714 -10.63770 -10.44545 -10.23925 -10.01527 -9.92132 -9.79973 -9.30281 -8.95092 -8.54249 -7.88491 -6.76720 -5.40481 1.10648 1.59872 2.06476 2.20054 3.04814 3.09261 3.14924 3.99024 4.04360 4.44412 4.54448 4.61486 4.73973 5.19287 5.28323 5.35299 5.58275 5.72128 5.75303 5.90207 6.20561 6.42203 6.46936 6.63508 6.76920 6.96294 7.19729 7.27028 7.75072 7.90087 8.81075 10.16708 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.004050 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.284096 B = 6911.979689 C = 7300.955690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.014 5.014 8 H 0.103 0.897 9 S 2.704 3.296 10 O -0.990 6.990 11 O -1.002 7.002 12 N -1.076 6.076 13 C 0.181 3.819 14 C -0.138 4.138 15 C -0.097 4.097 16 C -0.126 4.126 17 C -0.090 4.090 18 C -0.028 4.028 19 Br -0.164 7.164 20 C -0.126 4.126 21 H 0.292 0.708 22 H 0.413 0.587 23 H 0.160 0.840 24 H 0.127 0.873 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.179 -9.407 -1.667 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.148 5.148 8 H 0.121 0.879 9 S 2.805 3.195 10 O -0.980 6.980 11 O -0.992 6.992 12 N -0.820 5.820 13 C 0.083 3.917 14 C -0.160 4.160 15 C -0.116 4.116 16 C -0.146 4.146 17 C -0.091 4.091 18 C -0.143 4.143 19 Br -0.084 7.084 20 C -0.149 4.149 21 H 0.103 0.897 22 H 0.246 0.754 23 H 0.177 0.823 24 H 0.145 0.855 25 H 0.138 0.862 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.134 -10.015 -1.777 17.414 hybrid contribution 0.906 1.435 0.465 1.760 sum 15.040 -8.580 -1.312 17.365 Atomic orbital electron populations 1.69907 1.06724 1.30931 1.39481 1.24744 0.94493 1.00810 0.88487 0.86177 0.79896 0.79509 0.79899 1.18724 1.20043 1.18817 1.30375 1.06065 1.11152 1.67182 0.87870 1.00921 0.72041 0.73323 0.73183 1.93396 1.63764 1.87072 1.53781 1.93326 1.79741 1.86658 1.39457 1.54082 1.41999 1.52116 1.33784 1.17362 0.87207 0.97617 0.89515 1.22079 1.02300 0.99464 0.92116 1.20973 0.91984 0.98941 0.99677 1.20870 0.97302 1.02368 0.94042 1.19213 0.93016 1.02979 0.93920 1.23566 0.97336 0.88040 1.05348 1.97401 1.96561 1.17680 1.96710 1.20962 0.91067 1.03106 0.99737 0.89732 0.75381 0.82282 0.85505 0.86216 0.87445 0.87419 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.16 12.84 55.43 0.71 -23.45 15 2 C 0.13 3.64 5.45 -17.82 -0.10 3.54 15 3 Si 0.92 20.21 29.54 -169.99 -5.02 15.19 15 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 15 7 C -1.01 -27.27 9.61 30.60 0.29 -26.97 15 8 H 0.10 2.58 7.81 -52.48 -0.41 2.17 15 9 S 2.70 69.33 5.05 -107.50 -0.54 68.79 15 10 O -0.99 -28.26 17.58 -57.17 -1.01 -29.26 15 11 O -1.00 -27.40 15.16 -57.17 -0.87 -28.27 15 12 N -1.08 -21.15 5.77 32.41 0.19 -20.96 15 13 C 0.18 3.29 6.13 -83.78 -0.51 2.78 15 14 C -0.14 -2.52 9.23 -39.38 -0.36 -2.88 15 15 C -0.10 -1.43 10.04 -39.61 -0.40 -1.83 15 16 C -0.13 -1.63 9.70 -39.54 -0.38 -2.01 15 17 C -0.09 -1.18 5.19 -104.66 -0.54 -1.72 15 18 C -0.03 -0.28 6.73 36.00 0.24 -0.04 15 19 Br -0.16 -1.79 33.92 -68.01 -2.31 -4.10 15 20 C -0.13 -1.92 9.62 -39.38 -0.38 -2.30 15 21 H 0.29 7.56 8.31 -40.82 -0.34 7.22 15 22 H 0.41 6.83 8.96 -34.47 -0.31 6.52 15 23 H 0.16 3.22 5.72 -52.49 -0.30 2.92 15 24 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 25 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 26 H 0.11 0.87 8.08 -51.93 -0.42 0.45 15 27 H 0.11 0.96 8.08 -51.93 -0.42 0.54 15 28 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -32.99 284.02 -8.97 -41.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.26 Total: 7.27 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -2.14 Total: -31.44 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.90 Total: -44.41 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -1.87 Total: -57.53 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -0.54 Total: 68.79 kcal Atomic # 35 Polarization: -1.79 SS G_CDS: -2.31 Total: -4.10 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.99 -8.97 -41.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.704 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds