Wall clock time and date at job start Tue Mar 31 2020 11:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48499 * 109.47014 * 240.00123 * 3 2 1 5 5 H 1.48494 * 109.47108 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46766 * 120.00409 * 3 2 1 7 7 C 1.37880 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99963 * 359.71930 * 7 2 1 10 10 O 1.42108 * 106.40282 * 305.01921 * 9 7 2 11 11 O 1.42106 * 106.40374 * 77.93393 * 9 7 2 12 12 N 1.65593 * 107.22025 * 191.47546 * 9 7 2 13 13 C 1.39674 * 120.00158 * 298.45134 * 12 9 7 14 14 C 1.38931 * 120.07345 * 313.56259 * 13 12 9 15 15 C 1.38086 * 119.92286 * 179.74508 * 14 13 12 16 16 C 1.38315 * 120.07039 * 0.53360 * 15 14 13 17 17 C 1.38260 * 120.15355 * 359.74670 * 16 15 14 18 18 C 1.50694 * 119.96440 * 180.02562 * 17 16 15 19 19 Br 1.96605 * 109.46930 * 269.97420 * 18 17 16 20 20 C 1.38127 * 120.07574 * 359.97271 * 17 16 15 21 21 H 0.97003 * 119.99961 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00207 * 118.44920 * 12 9 7 23 23 H 1.07996 * 120.03731 * 0.02562 * 14 13 12 24 24 H 1.07996 * 119.96487 * 180.25574 * 15 14 13 25 25 H 1.08000 * 119.92007 * 179.76629 * 16 15 14 26 26 H 1.09002 * 109.47089 * 29.96812 * 18 17 16 27 27 H 1.08994 * 109.47804 * 149.97326 * 18 17 16 28 28 H 1.08001 * 120.03735 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1237 -2.7200 0.0063 10 8 0.2503 -2.6741 1.1263 11 8 0.6706 -2.9277 -1.3245 12 7 2.2223 -3.9189 0.3187 13 6 3.2846 -4.1393 -0.5610 14 6 3.0545 -4.1966 -1.9299 15 6 4.1079 -4.4094 -2.7971 16 6 5.3891 -4.5763 -2.3035 17 6 5.6207 -4.5257 -0.9414 18 6 7.0184 -4.7075 -0.4082 19 35 7.3437 -6.6149 -0.0596 20 6 4.5725 -4.3074 -0.0687 21 1 -0.4850 0.8401 0.0004 22 1 2.1282 -4.4682 1.1126 23 1 2.0537 -4.0704 -2.3156 24 1 3.9304 -4.4499 -3.8616 25 1 6.2105 -4.7464 -2.9837 26 1 7.7374 -4.3447 -1.1427 27 1 7.1300 -4.1447 0.5184 28 1 4.7541 -4.2675 0.9952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:54 Heat of formation + Delta-G solvation = -96.449535 kcal Electronic energy + Delta-G solvation = -16795.348657 eV Core-core repulsion = 13789.495050 eV Total energy + Delta-G solvation = -3005.853607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 318.966 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48995 -37.52123 -36.29334 -36.17529 -35.19644 -33.70229 -30.97560 -29.93580 -28.29734 -26.91209 -23.42708 -22.47303 -21.06598 -19.35281 -18.61698 -18.08782 -17.06846 -17.01041 -16.35271 -15.84958 -15.73528 -15.01334 -14.57730 -14.30876 -14.02977 -13.93646 -13.44634 -13.32456 -13.07721 -13.01667 -12.58974 -12.51514 -12.33901 -12.28761 -11.99644 -11.38892 -11.25389 -10.94720 -10.79527 -10.72206 -9.70359 -9.23453 -8.76571 -7.52250 0.00455 0.16042 0.54949 1.14135 1.33105 1.35471 1.48575 2.18350 2.54138 2.78617 2.88947 3.50326 3.64268 3.91725 4.06406 4.29802 4.35076 4.45450 4.53794 4.59046 4.77375 5.05616 5.14409 5.25453 5.47877 5.55875 5.62006 5.84444 6.00168 6.32932 6.74387 8.17882 Molecular weight = 318.97amu Principal moments of inertia in cm(-1) A = 0.022809 B = 0.004050 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.284096 B = 6911.979689 C = 7300.955690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.989 3.011 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.249 1.249 7 C -1.033 5.033 8 H 0.117 0.883 9 S 2.713 3.287 10 O -1.029 7.029 11 O -1.031 7.031 12 N -1.064 6.064 13 C 0.146 3.854 14 C -0.171 4.171 15 C -0.098 4.098 16 C -0.113 4.113 17 C -0.083 4.083 18 C -0.025 4.025 19 Br -0.171 7.171 20 C -0.127 4.127 21 H 0.300 0.700 22 H 0.424 0.576 23 H 0.128 0.872 24 H 0.150 0.850 25 H 0.158 0.842 26 H 0.136 0.864 27 H 0.122 0.878 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.673 -8.963 -2.028 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.172 1.172 7 C -1.167 5.167 8 H 0.135 0.865 9 S 2.815 3.185 10 O -1.020 7.020 11 O -1.021 7.021 12 N -0.813 5.813 13 C 0.050 3.950 14 C -0.192 4.192 15 C -0.116 4.116 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.140 4.140 19 Br -0.090 7.090 20 C -0.149 4.149 21 H 0.110 0.890 22 H 0.261 0.739 23 H 0.145 0.855 24 H 0.167 0.833 25 H 0.176 0.824 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.623 -9.600 -2.135 20.182 hybrid contribution -0.082 1.157 0.521 1.271 sum 17.541 -8.443 -1.614 19.534 Atomic orbital electron populations 1.70001 1.08663 1.32457 1.40845 1.25990 0.95383 1.05216 0.87533 0.85178 0.78850 0.74488 0.80820 1.17441 1.18683 1.17244 1.30702 1.06916 1.11972 1.67073 0.86496 1.00308 0.72291 0.73830 0.72053 1.93332 1.65839 1.87952 1.54841 1.93292 1.80949 1.87209 1.40636 1.53328 1.42059 1.51138 1.34765 1.17617 0.87774 1.00363 0.89276 1.22012 1.02118 1.02109 0.93003 1.21260 0.91919 0.98016 1.00446 1.21315 0.97396 0.99867 0.94683 1.19571 0.94068 1.00970 0.93861 1.23685 0.95665 0.87649 1.06951 1.97428 1.96433 1.18389 1.96773 1.21158 0.90173 1.02555 1.01041 0.88999 0.73927 0.85465 0.83253 0.82401 0.84601 0.85929 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.29 12.84 21.45 0.28 -52.02 15 2 C 0.07 3.97 5.45 84.66 0.46 4.43 15 3 Si 0.99 40.51 29.54 68.60 2.03 42.54 15 4 H -0.25 -9.69 7.11 99.48 0.71 -8.99 15 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 15 7 C -1.03 -56.26 9.61 67.73 0.65 -55.61 15 8 H 0.12 5.82 7.81 -2.91 -0.02 5.79 15 9 S 2.71 144.58 5.05 -56.49 -0.29 144.30 15 10 O -1.03 -61.32 17.58 -128.00 -2.25 -63.57 15 11 O -1.03 -59.37 15.16 -128.00 -1.94 -61.31 15 12 N -1.06 -43.00 5.77 -51.37 -0.30 -43.29 15 13 C 0.15 5.32 6.13 38.22 0.23 5.55 15 14 C -0.17 -6.31 9.23 22.40 0.21 -6.11 15 15 C -0.10 -2.72 10.04 22.25 0.22 -2.50 15 16 C -0.11 -2.51 9.70 22.29 0.22 -2.29 15 17 C -0.08 -1.90 5.19 -19.89 -0.10 -2.00 15 18 C -0.03 -0.40 6.73 71.23 0.48 0.08 15 19 Br -0.17 -3.19 33.92 -20.37 -0.69 -3.88 15 20 C -0.13 -3.62 9.62 22.40 0.22 -3.41 15 21 H 0.30 15.85 8.31 -92.71 -0.77 15.08 15 22 H 0.42 14.49 8.96 -96.74 -0.87 13.62 15 23 H 0.13 5.48 5.72 -2.91 -0.02 5.47 15 24 H 0.15 3.33 8.06 -2.91 -0.02 3.31 15 25 H 0.16 2.34 8.06 -2.91 -0.02 2.32 15 26 H 0.14 1.44 8.08 -2.39 -0.02 1.42 15 27 H 0.12 1.63 8.08 -2.39 -0.02 1.61 15 28 H 0.14 3.50 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -73.95 284.02 -0.24 -74.19 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.34 Total: 24.89 kcal Atomic # 6 Polarization: -64.43 SS G_CDS: 2.59 Total: -61.84 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -0.02 Total: -95.31 kcal Atomic # 8 Polarization: -120.69 SS G_CDS: -4.19 Total: -124.89 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 144.58 SS G_CDS: -0.29 Total: 144.30 kcal Atomic # 35 Polarization: -3.19 SS G_CDS: -0.69 Total: -3.88 kcal Total: -73.95 -0.24 -74.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.256 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds