Wall clock time and date at job start Tue Mar 31 2020 12:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34716 * 117.00150 * 2 1 4 4 O 1.21481 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.47669 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.39724 * 120.12272 * 0.02721 * 5 3 2 7 7 C 1.37908 * 120.00806 * 179.97438 * 6 5 3 8 8 C 1.38335 * 120.26054 * 359.72326 * 7 6 5 9 9 C 1.38883 * 120.24919 * 0.55116 * 8 7 6 10 10 N 1.39794 * 120.00054 * 179.72157 * 9 8 7 11 11 S 1.65606 * 119.99936 * 327.54466 * 10 9 8 12 12 O 1.42098 * 106.40158 * 314.12328 * 11 10 9 13 13 O 1.42101 * 106.39941 * 181.20441 * 11 10 9 14 14 C 1.76198 * 107.21858 * 67.66551 * 11 10 9 15 15 H 1.08009 * 120.00223 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99968 * 179.72771 * 14 11 10 17 17 N 1.31514 * 119.99540 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99754 * 179.97438 * 16 14 11 19 19 H 1.48491 * 109.47714 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47034 * 119.99992 * 18 16 14 21 21 H 1.48505 * 109.47105 * 239.99407 * 18 16 14 22 22 C 1.38824 * 119.99467 * 359.44903 * 9 8 7 23 23 Cl 1.73601 * 120.13338 * 180.25196 * 22 9 8 24 24 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47391 * 300.00526 * 1 2 3 26 26 H 1.09000 * 109.46891 * 60.00157 * 1 2 3 27 27 H 1.08003 * 120.00119 * 359.94633 * 6 5 3 28 28 H 1.07992 * 119.87061 * 180.02562 * 7 6 5 29 29 H 1.07994 * 119.86850 * 180.29964 * 8 7 6 30 30 H 0.96995 * 119.99676 * 147.54373 * 10 9 8 31 31 H 0.97004 * 119.99352 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5383 1.2776 0.0006 6 6 4.3018 0.1074 0.0005 7 6 5.6788 0.1823 0.0005 8 6 6.3100 1.4133 -0.0052 9 6 5.5617 2.5833 0.0005 10 7 6.2049 3.8244 0.0006 11 16 7.6636 4.0010 0.7645 12 8 7.5327 3.3691 2.0305 13 8 8.0345 5.3642 0.6109 14 6 8.8447 3.0589 -0.1422 15 1 8.5383 2.5103 -1.0207 16 6 10.1609 3.0259 0.2669 17 7 10.5349 3.6982 1.3336 18 14 11.4128 2.0265 -0.6939 19 1 10.7430 1.3673 -1.8435 20 1 12.4849 2.9245 -1.1935 21 1 12.0061 0.9927 0.1920 22 6 4.1749 2.5201 0.0005 23 17 3.2360 3.9803 0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.8136 -0.8560 0.0010 28 1 6.2668 -0.7235 0.0001 29 1 7.3887 1.4646 -0.0101 30 1 5.7969 4.5821 -0.4468 31 1 11.4611 3.6753 1.6212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985997.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:33 Heat of formation + Delta-G solvation = -170.690073 kcal Electronic energy + Delta-G solvation = -22293.631696 eV Core-core repulsion = 18498.986464 eV Total energy + Delta-G solvation = -3794.645232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.016 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65575 -40.30423 -37.71425 -37.52146 -37.31945 -36.32873 -36.14016 -35.23641 -32.33898 -30.33191 -28.71269 -28.27294 -25.31262 -23.58978 -22.40180 -20.92250 -19.93886 -19.36271 -18.46656 -18.18826 -17.52000 -17.38086 -17.16074 -16.95181 -16.22949 -15.88433 -15.69054 -15.25988 -14.95013 -14.64625 -14.11106 -14.01227 -13.66563 -13.27543 -13.06987 -12.95277 -12.85081 -12.74591 -12.65797 -12.57438 -12.51639 -12.39779 -12.22229 -12.03530 -11.75396 -11.26535 -11.06443 -10.94101 -10.06294 -9.35170 -8.78935 -7.55089 -0.53692 -0.03830 0.18694 0.97841 1.38439 1.40244 1.43780 1.58564 1.60920 2.20495 2.54476 2.56699 2.64236 3.53333 3.56093 3.79256 3.91771 3.93862 4.22195 4.35913 4.37426 4.39932 4.47404 4.77429 4.86243 5.00698 5.05863 5.23387 5.25723 5.33174 5.63421 5.84194 5.98796 6.65855 6.72454 8.18240 Molecular weight = 319.02amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.004387 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.819498 B = 6380.557669 C = 7250.904935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.509 3.491 4 O -0.511 6.511 5 C -0.112 4.112 6 C -0.060 4.060 7 C -0.080 4.080 8 C -0.145 4.145 9 C 0.166 3.834 10 N -1.059 6.059 11 S 2.701 3.299 12 O -1.021 7.021 13 O -1.033 7.033 14 C -1.029 5.029 15 H 0.137 0.863 16 C 0.075 3.925 17 N -0.890 5.890 18 Si 0.995 3.005 19 H -0.238 1.238 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.037 4.037 23 Cl -0.043 7.043 24 H 0.138 0.862 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.186 0.814 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.423 0.577 31 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.369 -13.127 -6.163 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.354 3.646 4 O -0.401 6.401 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.098 4.098 8 C -0.166 4.166 9 C 0.067 3.933 10 N -0.804 5.804 11 S 2.804 3.196 12 O -1.011 7.011 13 O -1.023 7.023 14 C -1.163 5.163 15 H 0.155 0.845 16 C -0.139 4.139 17 N -0.520 5.520 18 Si 0.812 3.188 19 H -0.161 1.161 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.069 4.069 23 Cl -0.014 7.014 24 H 0.156 0.844 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.203 0.797 28 H 0.202 0.798 29 H 0.178 0.822 30 H 0.259 0.741 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.365 -12.131 -5.127 18.764 hybrid contribution 0.352 0.818 -0.671 1.115 sum -13.014 -11.313 -5.798 18.192 Atomic orbital electron populations 1.23604 0.74040 1.06015 1.02573 1.86508 1.25270 1.30781 1.83923 1.20931 0.88553 0.82114 0.73018 1.90912 1.67053 1.36440 1.45673 1.18833 0.90363 0.92731 1.09563 1.21788 0.93403 0.97786 0.94939 1.21521 0.94558 0.97602 0.96104 1.22377 1.03254 0.91754 0.99217 1.17267 0.89676 0.86136 1.00199 1.53755 1.40413 1.15689 1.70529 1.00785 0.71665 0.73457 0.73691 1.93358 1.86278 1.78000 1.43484 1.93343 1.82094 1.39281 1.87599 1.30779 1.08696 1.48185 1.28656 0.84524 1.26047 1.00610 0.93277 0.93992 1.69997 1.21988 1.36960 1.23090 0.85024 0.76545 0.78097 0.79094 1.16068 1.19087 1.18064 1.20905 0.90101 0.88544 1.07363 1.98369 1.71707 1.34888 1.96464 0.84357 0.92103 0.91861 0.79671 0.79802 0.82232 0.74130 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -6.99 9.81 -56.26 -0.55 -7.54 16 3 C 0.51 13.75 7.89 70.31 0.55 14.30 16 4 O -0.51 -16.28 13.76 19.90 0.27 -16.00 16 5 C -0.11 -3.17 5.87 -20.10 -0.12 -3.29 16 6 C -0.06 -1.29 9.61 22.55 0.22 -1.07 16 7 C -0.08 -1.86 10.02 22.21 0.22 -1.64 16 8 C -0.14 -4.88 8.91 22.45 0.20 -4.68 16 9 C 0.17 6.22 6.20 38.17 0.24 6.45 16 10 N -1.06 -44.25 5.55 -51.36 -0.29 -44.53 16 11 S 2.70 142.28 4.62 -56.49 -0.26 142.02 16 12 O -1.02 -59.25 17.42 -128.00 -2.23 -61.48 16 13 O -1.03 -61.17 18.02 -128.00 -2.31 -63.48 16 14 C -1.03 -51.81 7.56 67.73 0.51 -51.30 16 15 H 0.14 5.96 6.91 -2.91 -0.02 5.94 16 16 C 0.07 3.84 5.46 84.65 0.46 4.30 16 17 N -0.89 -50.15 13.19 21.45 0.28 -49.87 16 18 Si 0.99 37.43 29.54 68.60 2.03 39.45 16 19 H -0.24 -8.06 7.11 99.48 0.71 -7.35 16 20 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 22 C -0.04 -1.29 6.37 22.74 0.14 -1.14 16 23 Cl -0.04 -1.51 24.97 -2.72 -0.07 -1.57 16 24 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.19 2.45 7.61 -2.91 -0.02 2.43 16 28 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.16 5.90 4.46 -2.91 -0.01 5.89 16 30 H 0.42 15.96 8.11 -96.75 -0.78 15.18 16 31 H 0.30 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -76.08 304.53 0.94 -75.14 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.43 Total: 24.33 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.63 Total: -36.45 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: 0.00 Total: -94.40 kcal Atomic # 8 Polarization: -143.69 SS G_CDS: -4.81 Total: -148.51 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 142.28 SS G_CDS: -0.26 Total: 142.02 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.57 kcal Total: -76.08 0.94 -75.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985997.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.554 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds