Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.43204 * 120.00176 * 80.81827 * 3 2 1 5 5 N 3.51040 * 140.68811 * 80.81340 * 2 1 3 6 6 C 1.41147 * 120.00085 * 260.81637 * 3 2 1 7 7 C 1.38996 * 119.99868 * 6.74901 * 6 3 2 8 8 H 1.08003 * 119.99722 * 225.47239 * 7 6 3 9 9 C 1.40819 * 120.00181 * 45.47086 * 7 6 3 10 10 N 1.30339 * 119.99507 * 9.72770 * 9 7 6 11 11 Si 1.86798 * 119.99977 * 189.73072 * 9 7 6 12 12 H 1.48497 * 109.47123 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46825 * 119.99950 * 11 9 7 14 14 H 1.48493 * 109.47016 * 239.99747 * 11 9 7 15 15 N 1.38225 * 120.00307 * 186.74558 * 6 3 2 16 16 S 1.65607 * 120.00416 * 184.92827 * 15 6 3 17 17 O 1.42101 * 106.39816 * 309.24728 * 16 15 6 18 18 O 1.42096 * 106.40455 * 176.32466 * 16 15 6 19 19 C 1.76205 * 107.21365 * 62.78543 * 16 15 6 20 20 C 1.38267 * 119.94440 * 83.74203 * 19 16 15 21 21 C 1.38145 * 120.05587 * 179.97438 * 20 19 16 22 22 C 1.38735 * 119.94032 * 359.97438 * 21 20 19 23 23 O 1.35904 * 120.05161 * 180.02562 * 22 21 20 24 24 C 1.38731 * 119.89232 * 0.27455 * 22 21 20 25 25 C 1.38142 * 119.94283 * 359.43063 * 24 22 21 26 26 H 0.97000 * 119.99467 * 184.97516 * 10 9 7 27 27 H 0.97007 * 120.00175 * 4.93361 * 15 6 3 28 28 H 1.07993 * 119.96906 * 0.02562 * 20 19 16 29 29 H 1.07993 * 120.02972 * 179.97438 * 21 20 19 30 30 H 0.96707 * 113.99536 * 90.00376 * 23 22 21 31 31 H 1.07994 * 120.02920 * 179.71760 * 24 22 21 32 32 H 1.07997 * 119.97596 * 180.27438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.1969 -1.2243 5 7 3.8520 -0.3551 -2.1955 6 6 3.2736 0.1960 1.2067 7 6 2.5858 0.2475 2.4135 8 1 2.8165 1.0183 3.1340 9 6 1.5883 -0.7052 2.6966 10 7 1.4383 -1.7418 1.9208 11 14 0.4799 -0.4833 4.1838 12 1 0.8515 0.7657 4.8960 13 1 -0.9341 -0.3967 3.7387 14 1 0.6410 -1.6420 5.0984 15 7 4.6486 0.3361 1.1884 16 16 5.4892 0.4429 2.6113 17 8 4.8477 1.4501 3.3816 18 8 6.8657 0.4904 2.2617 19 6 5.2473 -1.0738 3.4750 20 6 6.0390 -2.1687 3.1819 21 6 5.8517 -3.3588 3.8580 22 6 4.8684 -3.4544 4.8321 23 8 4.6825 -4.6239 5.4989 24 6 4.0719 -2.3559 5.1206 25 6 4.2672 -1.1663 4.4460 26 1 0.7062 -2.3597 2.0732 27 1 5.1213 0.3720 0.3420 28 1 6.8051 -2.0933 2.4245 29 1 6.4701 -4.2139 3.6285 30 1 5.2108 -4.7054 6.3048 31 1 3.3028 -2.4292 5.8752 32 1 3.6504 -0.3095 4.6733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195818659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -28.189541 kcal Electronic energy + Delta-G solvation = -24429.850318 eV Core-core repulsion = 20676.109973 eV Total energy + Delta-G solvation = -3753.740345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.046 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65282 -37.72291 -36.85595 -36.74332 -35.58511 -35.00500 -34.76382 -33.46467 -31.01132 -29.98900 -29.69586 -27.10040 -22.96430 -22.84526 -22.11368 -19.90146 -18.68025 -18.55473 -18.08617 -17.40301 -16.88546 -16.20427 -15.73682 -15.49801 -15.27871 -14.62852 -14.44080 -13.52102 -13.47787 -13.25531 -13.10074 -12.57228 -12.46391 -12.38077 -12.18877 -12.17424 -11.97066 -11.83949 -11.77033 -11.60859 -11.51883 -11.28371 -11.00815 -10.90559 -10.73263 -10.60700 -10.53331 -10.22504 -9.61964 -8.98714 -8.93470 -7.41804 -7.24873 -5.44538 0.55979 0.94065 1.40902 2.29837 2.84701 2.86052 2.94384 3.14128 3.52589 3.59674 3.75977 3.96119 4.05287 4.09359 4.36098 4.39533 4.60731 4.94196 4.99159 5.23748 5.34910 5.48131 5.58468 5.69538 5.75660 5.99795 6.06072 6.22232 6.29297 6.34956 6.56517 6.76260 6.95307 7.36072 7.49172 7.69068 7.96972 8.05190 8.81329 9.26892 9.55914 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.007629 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.761376 B = 3669.146324 C = 4754.088955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.353 3.647 3 C -0.245 4.245 4 C 0.300 3.700 5 N -0.523 5.523 6 C 0.423 3.577 7 C -0.506 4.506 8 H 0.137 0.863 9 C 0.095 3.905 10 N -0.729 5.729 11 Si 0.897 3.103 12 H -0.244 1.244 13 H -0.259 1.259 14 H -0.262 1.262 15 N -1.046 6.046 16 S 2.701 3.299 17 O -0.943 6.943 18 O -0.968 6.968 19 C -0.664 4.664 20 C -0.001 4.001 21 C -0.173 4.173 22 C 0.160 3.840 23 O -0.500 6.500 24 C -0.172 4.172 25 C 0.030 3.970 26 H 0.299 0.701 27 H 0.416 0.584 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.393 0.607 31 H 0.133 0.867 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 -3.069 11.428 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C 0.042 3.958 3 C -0.264 4.264 4 C -0.008 4.008 5 N -0.206 5.206 6 C 0.316 3.684 7 C -0.537 4.537 8 H 0.155 0.845 9 C -0.135 4.135 10 N -0.349 5.349 11 Si 0.718 3.282 12 H -0.166 1.166 13 H -0.184 1.184 14 H -0.187 1.187 15 N -0.789 5.789 16 S 2.794 3.206 17 O -0.933 6.933 18 O -0.958 6.958 19 C -0.752 4.752 20 C -0.021 4.021 21 C -0.193 4.193 22 C 0.116 3.884 23 O -0.311 6.311 24 C -0.192 4.192 25 C 0.011 3.989 26 H 0.112 0.888 27 H 0.251 0.749 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.250 0.750 31 H 0.151 0.849 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.614 -2.976 9.893 12.267 hybrid contribution -0.226 -0.923 0.873 1.290 sum 6.388 -3.899 10.766 13.112 Atomic orbital electron populations 1.80966 1.12323 1.17376 1.10019 1.24161 0.90967 0.89651 0.90983 1.12720 0.83794 1.44211 0.85695 1.25453 0.92743 0.90414 0.92177 1.81102 1.09934 1.18868 1.10656 1.16782 0.78532 0.80403 0.92726 1.20055 1.18033 1.13401 1.02254 0.84527 1.25885 0.95880 0.92862 0.98877 1.69442 1.24706 1.07169 1.33545 0.86351 0.80842 0.80700 0.80325 1.16629 1.18356 1.18681 1.54011 1.16035 1.83765 1.25087 1.01618 0.72011 0.74195 0.72752 1.93568 1.75630 1.54583 1.69485 1.93575 1.31554 1.87204 1.83473 1.30556 1.08583 1.21515 1.14586 1.20715 0.94974 0.90862 0.95511 1.21370 0.99863 0.98531 0.99506 1.18714 0.92945 0.84405 0.92376 1.84806 1.69029 1.35282 1.41966 1.21483 1.01762 0.92649 1.03260 1.20931 0.91045 0.97883 0.89071 0.88833 0.74926 0.84356 0.84933 0.75022 0.84915 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.93 18.53 41.84 0.78 -12.15 16 2 C 0.35 8.35 11.60 -22.48 -0.26 8.09 16 3 C -0.24 -5.37 5.33 -104.94 -0.56 -5.93 16 4 C 0.30 6.57 14.12 -22.47 -0.32 6.26 16 5 N -0.52 -11.77 18.54 41.84 0.78 -10.99 16 6 C 0.42 8.55 6.11 -83.60 -0.51 8.04 16 7 C -0.51 -10.19 4.83 -38.33 -0.19 -10.38 16 8 H 0.14 2.66 5.46 -52.48 -0.29 2.37 16 9 C 0.10 1.94 3.88 -17.21 -0.07 1.87 16 10 N -0.73 -15.75 10.82 55.59 0.60 -15.15 16 11 Si 0.90 16.03 29.17 -169.99 -4.96 11.07 16 12 H -0.24 -4.15 7.11 56.52 0.40 -3.75 16 13 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 14 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 15 N -1.05 -18.27 5.73 32.59 0.19 -18.08 16 16 S 2.70 44.57 5.33 -107.50 -0.57 43.99 16 17 O -0.94 -16.96 14.56 -57.17 -0.83 -17.79 16 18 O -0.97 -16.74 17.45 -57.17 -1.00 -17.73 16 19 C -0.66 -10.32 5.55 -39.56 -0.22 -10.54 16 20 C 0.00 -0.02 9.51 -39.60 -0.38 -0.39 16 21 C -0.17 -2.24 9.99 -39.43 -0.39 -2.63 16 22 C 0.16 2.11 6.70 -39.22 -0.26 1.85 16 23 O -0.50 -5.58 13.50 -19.44 -0.26 -5.84 16 24 C -0.17 -2.40 9.99 -39.43 -0.39 -2.79 16 25 C 0.03 0.46 7.68 -39.60 -0.30 0.15 16 26 H 0.30 6.21 8.29 -40.82 -0.34 5.87 16 27 H 0.42 6.71 7.71 -34.47 -0.27 6.45 16 28 H 0.14 1.69 7.76 -52.49 -0.41 1.29 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.39 2.16 9.06 45.56 0.41 2.58 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.15 2.27 5.86 -52.49 -0.31 1.96 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -28.71 310.50 -5.29 -34.00 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.83 Total: 10.40 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.85 Total: -6.41 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 2.34 Total: -56.38 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.09 Total: -41.36 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -4.96 Total: 11.07 kcal Atomic # 16 Polarization: 44.57 SS G_CDS: -0.57 Total: 43.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.71 -5.29 -34.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195818659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.810 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds