Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.43204 * 120.00176 * 80.81827 * 3 2 1 5 5 N 3.51040 * 140.68811 * 80.81340 * 2 1 3 6 6 C 1.41147 * 120.00085 * 260.81637 * 3 2 1 7 7 C 1.38996 * 119.99868 * 6.74901 * 6 3 2 8 8 H 1.08003 * 119.99722 * 225.47239 * 7 6 3 9 9 C 1.40819 * 120.00181 * 45.47086 * 7 6 3 10 10 N 1.30339 * 119.99507 * 9.72770 * 9 7 6 11 11 Si 1.86798 * 119.99977 * 189.73072 * 9 7 6 12 12 H 1.48497 * 109.47123 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46825 * 119.99950 * 11 9 7 14 14 H 1.48493 * 109.47016 * 239.99747 * 11 9 7 15 15 N 1.38225 * 120.00307 * 186.74558 * 6 3 2 16 16 S 1.65607 * 120.00416 * 184.92827 * 15 6 3 17 17 O 1.42101 * 106.39816 * 309.24728 * 16 15 6 18 18 O 1.42096 * 106.40455 * 176.32466 * 16 15 6 19 19 C 1.76205 * 107.21365 * 62.78543 * 16 15 6 20 20 C 1.38267 * 119.94440 * 83.74203 * 19 16 15 21 21 C 1.38145 * 120.05587 * 179.97438 * 20 19 16 22 22 C 1.38735 * 119.94032 * 359.97438 * 21 20 19 23 23 O 1.35904 * 120.05161 * 180.02562 * 22 21 20 24 24 C 1.38731 * 119.89232 * 0.27455 * 22 21 20 25 25 C 1.38142 * 119.94283 * 359.43063 * 24 22 21 26 26 H 0.97000 * 119.99467 * 184.97516 * 10 9 7 27 27 H 0.97007 * 120.00175 * 4.93361 * 15 6 3 28 28 H 1.07993 * 119.96906 * 0.02562 * 20 19 16 29 29 H 1.07993 * 120.02972 * 179.97438 * 21 20 19 30 30 H 0.96707 * 113.99536 * 90.00376 * 23 22 21 31 31 H 1.07994 * 120.02920 * 179.71760 * 24 22 21 32 32 H 1.07997 * 119.97596 * 180.27438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.1969 -1.2243 5 7 3.8520 -0.3551 -2.1955 6 6 3.2736 0.1960 1.2067 7 6 2.5858 0.2475 2.4135 8 1 2.8165 1.0183 3.1340 9 6 1.5883 -0.7052 2.6966 10 7 1.4383 -1.7418 1.9208 11 14 0.4799 -0.4833 4.1838 12 1 0.8515 0.7657 4.8960 13 1 -0.9341 -0.3967 3.7387 14 1 0.6410 -1.6420 5.0984 15 7 4.6486 0.3361 1.1884 16 16 5.4892 0.4429 2.6113 17 8 4.8477 1.4501 3.3816 18 8 6.8657 0.4904 2.2617 19 6 5.2473 -1.0738 3.4750 20 6 6.0390 -2.1687 3.1819 21 6 5.8517 -3.3588 3.8580 22 6 4.8684 -3.4544 4.8321 23 8 4.6825 -4.6239 5.4989 24 6 4.0719 -2.3559 5.1206 25 6 4.2672 -1.1663 4.4460 26 1 0.7062 -2.3597 2.0732 27 1 5.1213 0.3720 0.3420 28 1 6.8051 -2.0933 2.4245 29 1 6.4701 -4.2139 3.6285 30 1 5.2108 -4.7054 6.3048 31 1 3.3028 -2.4292 5.8752 32 1 3.6504 -0.3095 4.6733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195818659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -49.399420 kcal Electronic energy + Delta-G solvation = -24430.770047 eV Core-core repulsion = 20676.109973 eV Total energy + Delta-G solvation = -3754.660074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.046 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65030 -39.28310 -38.25896 -37.72137 -36.96359 -36.71829 -36.52919 -35.07730 -32.06161 -31.32198 -31.03977 -28.74079 -24.03731 -23.89638 -23.69569 -21.39922 -20.14771 -19.65203 -19.47395 -18.69499 -18.38575 -17.63575 -16.96512 -16.78422 -16.43185 -15.90412 -15.53416 -15.01907 -14.88153 -14.54084 -14.33190 -14.28053 -13.94890 -13.86161 -13.57568 -13.43897 -13.38834 -13.28662 -13.22591 -13.14542 -13.04833 -12.85068 -12.68348 -12.61560 -12.12489 -11.84753 -11.79953 -11.50334 -11.16442 -10.03804 -9.99630 -9.00662 -8.89743 -7.10728 -0.71653 -0.17382 0.35472 0.69778 1.39379 1.43489 1.54483 1.83162 2.00579 2.11903 2.29054 2.41262 2.56468 2.67068 2.83827 3.16155 3.35239 3.48124 3.77879 3.88249 3.98585 4.25852 4.31864 4.49026 4.58976 4.70952 4.95614 4.98723 5.06065 5.14807 5.30894 5.36102 5.76742 5.81235 6.10601 6.35686 6.45244 6.78808 7.08094 7.44682 7.97199 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.007629 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.761376 B = 3669.146324 C = 4754.088955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.356 3.644 3 C -0.267 4.267 4 C 0.307 3.693 5 N -0.538 5.538 6 C 0.431 3.569 7 C -0.504 4.504 8 H 0.145 0.855 9 C 0.076 3.924 10 N -0.749 5.749 11 Si 0.928 3.072 12 H -0.229 1.229 13 H -0.280 1.280 14 H -0.240 1.240 15 N -1.043 6.043 16 S 2.713 3.287 17 O -0.959 6.959 18 O -0.976 6.976 19 C -0.678 4.678 20 C -0.010 4.010 21 C -0.175 4.175 22 C 0.168 3.832 23 O -0.505 6.505 24 C -0.181 4.181 25 C 0.015 3.985 26 H 0.300 0.700 27 H 0.421 0.579 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.419 0.581 31 H 0.148 0.852 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -4.077 13.127 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C 0.047 3.953 3 C -0.286 4.286 4 C 0.000 4.000 5 N -0.221 5.221 6 C 0.321 3.679 7 C -0.536 4.536 8 H 0.162 0.838 9 C -0.153 4.153 10 N -0.370 5.370 11 Si 0.748 3.252 12 H -0.151 1.151 13 H -0.206 1.206 14 H -0.163 1.163 15 N -0.784 5.784 16 S 2.808 3.192 17 O -0.949 6.949 18 O -0.966 6.966 19 C -0.768 4.768 20 C -0.029 4.029 21 C -0.195 4.195 22 C 0.123 3.877 23 O -0.320 6.320 24 C -0.201 4.201 25 C -0.004 4.004 26 H 0.112 0.888 27 H 0.257 0.743 28 H 0.170 0.830 29 H 0.176 0.824 30 H 0.280 0.720 31 H 0.166 0.834 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.385 -3.964 11.594 14.307 hybrid contribution -0.392 -0.704 0.464 0.929 sum 6.993 -4.667 12.058 14.700 Atomic orbital electron populations 1.80946 1.12980 1.18875 1.10724 1.24458 0.91362 0.89080 0.90402 1.12778 0.83226 1.46336 0.86310 1.25421 0.92492 0.90035 0.92003 1.81097 1.10349 1.19824 1.10822 1.16783 0.79474 0.79383 0.92232 1.20285 1.17876 1.13283 1.02119 0.83760 1.26414 0.96224 0.92393 1.00261 1.69484 1.25064 1.07778 1.34634 0.85883 0.78194 0.82271 0.78885 1.15115 1.20612 1.16268 1.53952 1.15119 1.83333 1.26030 1.01139 0.71460 0.74398 0.72184 1.93537 1.75881 1.55949 1.69559 1.93560 1.31852 1.87618 1.83592 1.30287 1.10017 1.21172 1.15328 1.20986 0.95056 0.90910 0.95958 1.21668 1.00003 0.98841 0.98938 1.18798 0.92166 0.84580 0.92130 1.84744 1.69845 1.34078 1.43360 1.21688 1.02393 0.92440 1.03542 1.21012 0.91289 0.98557 0.89561 0.88777 0.74303 0.83020 0.82443 0.71967 0.83410 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -27.33 18.53 19.00 0.35 -26.97 16 2 C 0.36 16.90 11.60 88.33 1.02 17.92 16 3 C -0.27 -11.68 5.33 -20.07 -0.11 -11.78 16 4 C 0.31 13.43 14.12 88.33 1.25 14.68 16 5 N -0.54 -24.03 18.54 19.01 0.35 -23.68 16 6 C 0.43 17.16 6.11 39.03 0.24 17.40 16 7 C -0.50 -19.86 4.83 23.08 0.11 -19.74 16 8 H 0.15 5.45 5.46 -2.91 -0.02 5.43 16 9 C 0.08 3.00 3.88 85.55 0.33 3.33 16 10 N -0.75 -31.88 10.82 21.98 0.24 -31.65 16 11 Si 0.93 31.24 29.17 68.60 2.00 33.24 16 12 H -0.23 -7.15 7.11 99.48 0.71 -6.44 16 13 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 14 H -0.24 -7.16 7.11 99.48 0.71 -6.45 16 15 N -1.04 -35.76 5.73 -50.80 -0.29 -36.06 16 16 S 2.71 87.05 5.33 -56.49 -0.30 86.75 16 17 O -0.96 -33.73 14.56 -128.00 -1.86 -35.59 16 18 O -0.98 -32.75 17.45 -128.00 -2.23 -34.99 16 19 C -0.68 -20.08 5.55 22.28 0.12 -19.96 16 20 C -0.01 -0.25 9.51 22.25 0.21 -0.04 16 21 C -0.18 -4.03 9.99 22.37 0.22 -3.81 16 22 C 0.17 3.93 6.70 22.51 0.15 4.08 16 23 O -0.51 -9.49 13.50 -92.47 -1.25 -10.74 16 24 C -0.18 -4.60 9.99 22.36 0.22 -4.38 16 25 C 0.02 0.44 7.68 22.25 0.17 0.61 16 26 H 0.30 12.30 8.29 -92.71 -0.77 11.53 16 27 H 0.42 13.41 7.71 -96.74 -0.75 12.66 16 28 H 0.15 3.42 7.76 -2.91 -0.02 3.40 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.42 3.02 9.06 -74.05 -0.67 2.35 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.15 4.24 5.86 -2.91 -0.02 4.23 16 Total: -1.00 -59.27 310.50 0.79 -58.48 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.17 Total: 22.87 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 3.95 Total: -1.68 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: 0.65 Total: -118.35 kcal Atomic # 8 Polarization: -75.97 SS G_CDS: -5.35 Total: -81.32 kcal Atomic # 14 Polarization: 31.24 SS G_CDS: 2.00 Total: 33.24 kcal Atomic # 16 Polarization: 87.05 SS G_CDS: -0.30 Total: 86.75 kcal Total: -59.27 0.79 -58.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195818659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.083 kcal (2) G-P(sol) polarization free energy of solvation -59.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds