Wall clock time and date at job start Tue Mar 31 2020 12:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.39590 * 120.45468 * 190.11436 * 3 2 1
5 5 C 1.37707 * 120.18803 * 179.97438 * 4 3 2
6 6 C 1.39830 * 121.16891 * 0.02562 * 5 4 3
7 7 C 1.48281 * 119.53562 * 179.97438 * 6 5 4
8 8 C 1.39413 * 120.09795 * 309.99790 * 7 6 5
9 9 C 1.37947 * 119.95429 * 180.02562 * 8 7 6
10 10 C 1.38545 * 120.15321 * 359.97438 * 9 8 7
11 11 F 1.35099 * 119.90525 * 180.02562 * 10 9 8
12 12 C 1.38708 * 120.19645 * 0.02562 * 10 9 8
13 13 F 1.35096 * 119.97993 * 179.97438 * 12 10 9
14 14 C 1.38293 * 120.04178 * 359.72846 * 12 10 9
15 15 Cl 1.73598 * 120.07648 * 180.27699 * 14 12 10
16 16 C 1.38630 * 120.92516 * 0.02562 * 6 5 4
17 17 C 1.40584 * 119.73466 * 359.97438 * 16 6 5
18 18 C 1.40843 * 120.55810 * 179.97438 * 17 16 6
19 19 H 1.08004 * 120.00106 * 155.91661 * 18 17 16
20 20 C 1.40237 * 119.99867 * 335.92835 * 18 17 16
21 21 N 1.30665 * 119.99590 * 341.76838 * 20 18 17
22 22 Si 1.86794 * 120.00046 * 161.76896 * 20 18 17
23 23 H 1.48501 * 109.47151 * 89.99940 * 22 20 18
24 24 H 1.48497 * 109.47086 * 209.99624 * 22 20 18
25 25 H 1.48505 * 109.47157 * 329.99715 * 22 20 18
26 26 H 1.07998 * 119.90701 * 0.26375 * 4 3 2
27 27 H 1.08002 * 119.40964 * 180.02562 * 5 4 3
28 28 H 1.08001 * 120.02031 * 359.97438 * 8 7 6
29 29 H 1.08005 * 119.92651 * 180.02562 * 9 8 7
30 30 H 1.08000 * 120.13082 * 180.02562 * 16 6 5
31 31 H 0.96994 * 119.99299 * 185.04818 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2750 1.1856 0.2113
5 6 4.6520 1.1798 0.2107
6 6 5.3707 -0.0011 0.0000
7 6 6.8531 0.0344 0.0062
8 6 7.5331 0.9764 -0.7644
9 6 8.9122 1.0064 -0.7568
10 6 9.6237 0.1027 0.0155
11 9 10.9743 0.1369 0.0196
12 6 8.9536 -0.8372 0.7846
13 9 9.6518 -1.7167 1.5357
14 6 7.5711 -0.8713 0.7870
15 17 6.7313 -2.0425 1.7548
16 6 4.7167 -1.2042 -0.2156
17 6 3.3114 -1.2425 -0.2229
18 6 2.6292 -2.4553 -0.4408
19 1 1.6205 -2.5806 -0.0758
20 6 3.2599 -3.5002 -1.1315
21 7 4.3076 -3.2546 -1.8727
22 14 2.6021 -5.2429 -0.9920
23 1 1.5949 -5.4787 -2.0574
24 1 3.7204 -6.2078 -1.1457
25 1 1.9682 -5.4277 0.3382
26 1 2.7405 2.1087 0.3804
27 1 5.1863 2.1037 0.3759
28 1 6.9805 1.6816 -1.3675
29 1 9.4386 1.7366 -1.3536
30 1 5.2846 -2.1087 -0.3766
31 1 4.6996 -3.9623 -2.4078
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205681751.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:09
Heat of formation + Delta-G solvation = -32.472375 kcal
Electronic energy + Delta-G solvation = -22801.760799 eV
Core-core repulsion = 18902.410764 eV
Total energy + Delta-G solvation = -3899.350035 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.027 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-49.45435 -48.52642 -39.28335 -37.48277 -36.26810 -35.18297 -34.23340 -31.84024
-30.66124 -30.01728 -28.40422 -25.90118 -23.70400 -23.09309 -21.35625 -21.03587
-18.17411 -17.79866 -17.43279 -17.16160 -16.67222 -16.34522 -15.57372 -14.96904
-14.91239 -14.72424 -14.25432 -14.14446 -13.54796 -13.38299 -13.11769 -12.87358
-12.71295 -12.56731 -12.00189 -11.87316 -11.63629 -11.56615 -11.50396 -11.26425
-11.16237 -10.94313 -10.75537 -10.68044 -10.08429 -9.88156 -9.59739 -8.78498
-8.75759 -7.85235 -7.52252 -7.22870 -4.80101 0.77292 0.88118 2.00301
2.17061 2.57959 2.87878 2.90987 2.99002 3.31779 3.62765 3.74031
3.86100 4.02858 4.31940 4.37585 4.61213 4.75314 4.98936 5.28937
5.36981 5.41685 5.63302 5.81273 5.94397 6.00259 6.18655 6.25035
6.61126 6.62061 6.72380 6.88309 7.05032 7.35178 7.57471 7.59028
7.75119 8.08382 8.33231 8.42720 8.76447 9.65683
Molecular weight = 319.03amu
Principal moments of inertia in cm(-1)
A = 0.013750 B = 0.004987 C = 0.004086
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.819192 B = 5613.347787 C = 6851.151698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.509 5.509
2 C 0.299 3.701
3 C -0.183 4.183
4 C -0.027 4.027
5 C -0.230 4.230
6 C -0.038 4.038
7 C 0.017 3.983
8 C -0.083 4.083
9 C -0.121 4.121
10 C 0.060 3.940
11 F -0.130 7.130
12 C 0.074 3.926
13 F -0.121 7.121
14 C -0.048 4.048
15 Cl -0.022 7.022
16 C -0.121 4.121
17 C 0.145 3.855
18 C -0.423 4.423
19 H 0.088 0.912
20 C 0.077 3.923
21 N -0.759 5.759
22 Si 0.911 3.089
23 H -0.263 1.263
24 H -0.269 1.269
25 H -0.254 1.254
26 H 0.102 0.898
27 H 0.100 0.900
28 H 0.152 0.848
29 H 0.149 0.851
30 H 0.136 0.864
31 H 0.293 0.707
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.140 3.418 1.009 11.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.188 5.188
2 C -0.011 4.011
3 C -0.189 4.189
4 C -0.048 4.048
5 C -0.250 4.250
6 C -0.039 4.039
7 C 0.016 3.984
8 C -0.101 4.101
9 C -0.140 4.140
10 C 0.039 3.961
11 F -0.108 7.108
12 C 0.053 3.947
13 F -0.100 7.100
14 C -0.076 4.076
15 Cl 0.008 6.992
16 C -0.140 4.140
17 C 0.139 3.861
18 C -0.450 4.450
19 H 0.106 0.894
20 C -0.147 4.147
21 N -0.381 5.381
22 Si 0.734 3.266
23 H -0.188 1.188
24 H -0.194 1.194
25 H -0.178 1.178
26 H 0.120 0.880
27 H 0.119 0.881
28 H 0.169 0.831
29 H 0.166 0.834
30 H 0.153 0.847
31 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 9.600 3.141 1.008 10.151
hybrid contribution 0.633 -1.081 0.120 1.258
sum 10.233 2.060 1.128 10.499
Atomic orbital electron populations
1.81027 1.12765 1.10023 1.14959 1.25794 0.92735 0.91360 0.91183
1.16970 0.83255 0.94618 1.24088 1.20341 0.93447 0.94979 0.96044
1.19988 0.93035 0.95954 1.16006 1.18261 0.87823 0.95150 1.02684
1.18986 0.94825 0.91882 0.92735 1.21204 0.92543 0.98178 0.98183
1.21060 0.94627 0.98866 0.99427 1.17442 0.77438 0.99152 1.02048
1.91512 1.27900 1.95936 1.95478 1.17211 0.88367 0.92300 0.96809
1.91535 1.78433 1.66297 1.73726 1.20923 0.89600 0.97071 0.99985
1.98417 1.76896 1.55427 1.68483 1.21499 0.93805 0.96144 1.02566
1.18308 0.91042 0.89862 0.86854 1.19806 1.01028 0.95864 1.28291
0.89362 1.26117 0.93483 1.02035 0.93090 1.69658 1.16493 1.36171
1.15770 0.86194 0.79760 0.79814 0.80805 1.18801 1.19357 1.17768
0.88023 0.88147 0.83063 0.83354 0.84679 0.89595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -11.91 18.54 41.84 0.78 -11.13 16
2 C 0.30 6.76 14.28 -22.47 -0.32 6.43 16
3 C -0.18 -3.98 5.95 -104.12 -0.62 -4.60 16
4 C -0.03 -0.52 9.74 -39.27 -0.38 -0.90 16
5 C -0.23 -4.07 9.41 -39.18 -0.37 -4.44 16
6 C -0.04 -0.71 5.10 -105.03 -0.54 -1.25 16
7 C 0.02 0.27 5.45 -104.87 -0.57 -0.30 16
8 C -0.08 -1.06 9.46 -39.25 -0.37 -1.43 16
9 C -0.12 -1.38 10.01 -39.57 -0.40 -1.78 16
10 C 0.06 0.80 7.31 -39.29 -0.29 0.52 16
11 F -0.13 -1.75 17.17 2.25 0.04 -1.71 16
12 C 0.07 1.13 7.27 -39.39 -0.29 0.85 16
13 F -0.12 -1.91 16.74 2.25 0.04 -1.87 16
14 C -0.05 -0.78 6.27 -39.10 -0.25 -1.03 16
15 Cl -0.02 -0.37 25.62 -51.86 -1.33 -1.70 16
16 C -0.12 -2.58 6.79 -38.55 -0.26 -2.84 16
17 C 0.14 3.32 5.74 -104.68 -0.60 2.72 16
18 C -0.42 -9.92 8.58 -37.85 -0.32 -10.25 16
19 H 0.09 2.11 7.37 -52.48 -0.39 1.72 16
20 C 0.08 1.67 5.14 -17.30 -0.09 1.59 16
21 N -0.76 -16.70 10.96 55.56 0.61 -16.09 16
22 Si 0.91 16.84 29.60 -169.99 -5.03 11.81 16
23 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16
24 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16
25 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16
26 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16
27 H 0.10 1.50 8.00 -52.49 -0.42 1.08 16
28 H 0.15 1.65 8.03 -52.49 -0.42 1.22 16
29 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16
30 H 0.14 2.98 5.24 -52.49 -0.27 2.71 16
31 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16
LS Contribution 309.49 15.07 4.66 4.66
Total: -1.00 -24.32 309.49 -7.38 -31.70
By element:
Atomic # 1 Polarization: 2.53 SS G_CDS: -1.48 Total: 1.05 kcal
Atomic # 6 Polarization: -11.04 SS G_CDS: -5.66 Total: -16.70 kcal
Atomic # 7 Polarization: -28.61 SS G_CDS: 1.38 Total: -27.23 kcal
Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal
Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal
Atomic # 17 Polarization: -0.37 SS G_CDS: -1.33 Total: -1.70 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -24.32 -7.38 -31.70 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205681751.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal
(2) G-P(sol) polarization free energy of solvation -24.322 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds