Wall clock time and date at job start Tue Mar 31 2020 12:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.43201 * 179.97438 * 2 1
4 4 C 1.39590 * 120.45468 * 190.11436 * 3 2 1
5 5 C 1.37707 * 120.18803 * 179.97438 * 4 3 2
6 6 C 1.39830 * 121.16891 * 0.02562 * 5 4 3
7 7 C 1.48281 * 119.53562 * 179.97438 * 6 5 4
8 8 C 1.39413 * 120.09795 * 309.99790 * 7 6 5
9 9 C 1.37947 * 119.95429 * 180.02562 * 8 7 6
10 10 C 1.38545 * 120.15321 * 359.97438 * 9 8 7
11 11 F 1.35099 * 119.90525 * 180.02562 * 10 9 8
12 12 C 1.38708 * 120.19645 * 0.02562 * 10 9 8
13 13 F 1.35096 * 119.97993 * 179.97438 * 12 10 9
14 14 C 1.38293 * 120.04178 * 359.72846 * 12 10 9
15 15 Cl 1.73598 * 120.07648 * 180.27699 * 14 12 10
16 16 C 1.38630 * 120.92516 * 0.02562 * 6 5 4
17 17 C 1.40584 * 119.73466 * 359.97438 * 16 6 5
18 18 C 1.40843 * 120.55810 * 179.97438 * 17 16 6
19 19 H 1.08004 * 120.00106 * 155.91661 * 18 17 16
20 20 C 1.40237 * 119.99867 * 335.92835 * 18 17 16
21 21 N 1.30665 * 119.99590 * 341.76838 * 20 18 17
22 22 Si 1.86794 * 120.00046 * 161.76896 * 20 18 17
23 23 H 1.48501 * 109.47151 * 89.99940 * 22 20 18
24 24 H 1.48497 * 109.47086 * 209.99624 * 22 20 18
25 25 H 1.48505 * 109.47157 * 329.99715 * 22 20 18
26 26 H 1.07998 * 119.90701 * 0.26375 * 4 3 2
27 27 H 1.08002 * 119.40964 * 180.02562 * 5 4 3
28 28 H 1.08001 * 120.02031 * 359.97438 * 8 7 6
29 29 H 1.08005 * 119.92651 * 180.02562 * 9 8 7
30 30 H 1.08000 * 120.13082 * 180.02562 * 16 6 5
31 31 H 0.96994 * 119.99299 * 185.04818 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2750 1.1856 0.2113
5 6 4.6520 1.1798 0.2107
6 6 5.3707 -0.0011 0.0000
7 6 6.8531 0.0344 0.0062
8 6 7.5331 0.9764 -0.7644
9 6 8.9122 1.0064 -0.7568
10 6 9.6237 0.1027 0.0155
11 9 10.9743 0.1369 0.0196
12 6 8.9536 -0.8372 0.7846
13 9 9.6518 -1.7167 1.5357
14 6 7.5711 -0.8713 0.7870
15 17 6.7313 -2.0425 1.7548
16 6 4.7167 -1.2042 -0.2156
17 6 3.3114 -1.2425 -0.2229
18 6 2.6292 -2.4553 -0.4408
19 1 1.6205 -2.5806 -0.0758
20 6 3.2599 -3.5002 -1.1315
21 7 4.3076 -3.2546 -1.8727
22 14 2.6021 -5.2429 -0.9920
23 1 1.5949 -5.4787 -2.0574
24 1 3.7204 -6.2078 -1.1457
25 1 1.9682 -5.4277 0.3382
26 1 2.7405 2.1087 0.3804
27 1 5.1863 2.1037 0.3759
28 1 6.9805 1.6816 -1.3675
29 1 9.4386 1.7366 -1.3536
30 1 5.2846 -2.1087 -0.3766
31 1 4.6996 -3.9623 -2.4078
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001205681751.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:09
Heat of formation + Delta-G solvation = -40.869145 kcal
Electronic energy + Delta-G solvation = -22802.124910 eV
Core-core repulsion = 18902.410764 eV
Total energy + Delta-G solvation = -3899.714147 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.027 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-50.58037 -49.65324 -40.51754 -38.96654 -37.52030 -36.93234 -35.81680 -33.22269
-31.85746 -31.50321 -29.75883 -27.52436 -25.01902 -24.23615 -22.81442 -22.47879
-19.57609 -19.17035 -18.84971 -18.31306 -18.02614 -17.47831 -17.06282 -16.24167
-16.09413 -15.85506 -15.71792 -15.32858 -15.07070 -14.70842 -14.59034 -14.35945
-14.20100 -13.89117 -13.50346 -13.42110 -13.22567 -13.09332 -12.84889 -12.64704
-12.53620 -12.31634 -12.17018 -12.12093 -11.61800 -11.40070 -11.17508 -10.01973
-9.90900 -9.44190 -9.01143 -8.82432 -6.49580 -0.41221 -0.21297 0.47293
0.94950 1.04513 1.34539 1.43999 1.50211 2.07243 2.10713 2.14669
2.45140 2.64377 2.67835 3.22836 3.45447 3.58949 3.70952 3.75199
3.94069 4.27498 4.42542 4.59463 4.73654 4.84569 4.96034 4.98509
5.08287 5.19745 5.29619 5.46658 5.58664 5.80165 5.97482 6.05856
6.16582 6.44705 6.67835 6.80341 7.00763 8.07391
Molecular weight = 319.03amu
Principal moments of inertia in cm(-1)
A = 0.013750 B = 0.004987 C = 0.004086
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.819192 B = 5613.347787 C = 6851.151698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C 0.304 3.696
3 C -0.205 4.205
4 C -0.027 4.027
5 C -0.213 4.213
6 C -0.027 4.027
7 C -0.007 4.007
8 C -0.067 4.067
9 C -0.097 4.097
10 C 0.065 3.935
11 F -0.128 7.128
12 C 0.058 3.942
13 F -0.130 7.130
14 C -0.059 4.059
15 Cl -0.043 7.043
16 C -0.142 4.142
17 C 0.126 3.874
18 C -0.462 4.462
19 H 0.068 0.932
20 C 0.050 3.950
21 N -0.780 5.780
22 Si 0.963 3.037
23 H -0.261 1.261
24 H -0.256 1.256
25 H -0.263 1.263
26 H 0.129 0.871
27 H 0.141 0.859
28 H 0.180 0.820
29 H 0.193 0.807
30 H 0.123 0.877
31 H 0.300 0.700
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.251 5.589 0.232 14.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.213 5.213
2 C -0.004 4.004
3 C -0.211 4.211
4 C -0.047 4.047
5 C -0.232 4.232
6 C -0.028 4.028
7 C -0.008 4.008
8 C -0.085 4.085
9 C -0.115 4.115
10 C 0.045 3.955
11 F -0.106 7.106
12 C 0.037 3.963
13 F -0.109 7.109
14 C -0.087 4.087
15 Cl -0.014 7.014
16 C -0.161 4.161
17 C 0.120 3.880
18 C -0.490 4.490
19 H 0.087 0.913
20 C -0.171 4.171
21 N -0.403 5.403
22 Si 0.784 3.216
23 H -0.186 1.186
24 H -0.180 1.180
25 H -0.187 1.187
26 H 0.147 0.853
27 H 0.158 0.842
28 H 0.198 0.802
29 H 0.210 0.790
30 H 0.141 0.859
31 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 11.722 5.325 0.232 12.877
hybrid contribution 0.160 -1.565 0.380 1.618
sum 11.882 3.760 0.611 12.478
Atomic orbital electron populations
1.81002 1.13371 1.10819 1.16141 1.26076 0.93043 0.90690 0.90597
1.17257 0.82854 0.95613 1.25374 1.20686 0.94165 0.94886 0.95005
1.20454 0.92675 0.97032 1.13060 1.18515 0.89595 0.94486 1.00205
1.18974 0.93461 0.93711 0.94702 1.21512 0.93206 0.97018 0.96788
1.21474 0.93965 0.98140 0.97931 1.17648 0.77559 0.98763 1.01520
1.91526 1.27848 1.95864 1.95399 1.17387 0.88126 0.93103 0.97705
1.91509 1.78462 1.66779 1.74113 1.21005 0.90049 0.97076 1.00592
1.98407 1.77346 1.56464 1.69177 1.21390 0.93091 0.97057 1.04544
1.18582 0.92095 0.90146 0.87142 1.19819 1.00794 0.97607 1.30770
0.91338 1.26607 0.93727 1.04315 0.92474 1.69659 1.17192 1.37191
1.16254 0.85440 0.79490 0.76562 0.80098 1.18603 1.17967 1.18698
0.85275 0.84155 0.80235 0.78951 0.85935 0.88885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.53 -25.45 18.54 19.00 0.35 -25.10 16
2 C 0.30 14.01 14.28 88.33 1.26 15.27 16
3 C -0.20 -8.93 5.95 -19.54 -0.12 -9.05 16
4 C -0.03 -0.96 9.74 22.47 0.22 -0.74 16
5 C -0.21 -6.82 9.41 22.53 0.21 -6.61 16
6 C -0.03 -0.96 5.10 -20.13 -0.10 -1.06 16
7 C -0.01 -0.22 5.45 -20.02 -0.11 -0.33 16
8 C -0.07 -1.40 9.46 22.48 0.21 -1.19 16
9 C -0.10 -1.70 10.01 22.27 0.22 -1.47 16
10 C 0.07 1.54 7.31 22.46 0.16 1.71 16
11 F -0.13 -3.03 17.17 44.97 0.77 -2.26 16
12 C 0.06 1.67 7.27 22.40 0.16 1.83 16
13 F -0.13 -4.02 16.74 44.97 0.75 -3.26 16
14 C -0.06 -1.87 6.27 22.58 0.14 -1.73 16
15 Cl -0.04 -1.51 25.62 -2.72 -0.07 -1.58 16
16 C -0.14 -6.09 6.79 22.94 0.16 -5.93 16
17 C 0.13 5.91 5.74 -19.90 -0.11 5.80 16
18 C -0.46 -22.76 8.58 23.39 0.20 -22.56 16
19 H 0.07 3.50 7.37 -2.91 -0.02 3.48 16
20 C 0.05 2.27 5.14 85.35 0.44 2.71 16
21 N -0.78 -35.18 10.96 21.88 0.24 -34.94 16
22 Si 0.96 35.51 29.60 68.60 2.03 37.54 16
23 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16
24 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16
25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16
26 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16
27 H 0.14 3.41 8.00 -2.91 -0.02 3.38 16
28 H 0.18 2.77 8.03 -2.91 -0.02 2.75 16
29 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16
30 H 0.12 5.56 5.24 -2.91 -0.02 5.54 16
31 H 0.30 12.13 8.30 -92.71 -0.77 11.36 16
Total: -1.00 -55.16 309.49 8.25 -46.91
By element:
Atomic # 1 Polarization: 4.82 SS G_CDS: 1.22 Total: 6.04 kcal
Atomic # 6 Polarization: -26.30 SS G_CDS: 2.95 Total: -23.35 kcal
Atomic # 7 Polarization: -60.63 SS G_CDS: 0.59 Total: -60.04 kcal
Atomic # 9 Polarization: -7.05 SS G_CDS: 1.53 Total: -5.52 kcal
Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal
Atomic # 17 Polarization: -1.51 SS G_CDS: -0.07 Total: -1.58 kcal
Total: -55.16 8.25 -46.91 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205681751.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.043 kcal
(2) G-P(sol) polarization free energy of solvation -55.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds