Wall clock time and date at job start Tue Mar 31 2020 12:03:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.31863 * 119.65184 * 2 1
4 4 C 1.31913 * 121.76416 * 180.27220 * 3 2 1
5 5 Br 1.89097 * 119.57199 * 179.75231 * 4 3 2
6 6 C 1.38377 * 120.86063 * 359.72643 * 4 3 2
7 7 C 1.38507 * 119.20851 * 0.02562 * 6 4 3
8 8 C 1.38669 * 119.64491 * 179.73939 * 2 1 3
9 9 O 1.35923 * 120.46748 * 0.02562 * 8 2 1
10 10 C 1.42898 * 117.00286 * 182.40666 * 9 8 2
11 11 H 1.09000 * 109.47195 * 21.92983 * 10 9 8
12 12 C 1.50697 * 109.47271 * 141.93230 * 10 9 8
13 13 H 1.07996 * 120.00313 * 92.79833 * 12 10 9
14 14 C 1.37880 * 119.99689 * 272.80132 * 12 10 9
15 15 N 1.31514 * 120.00158 * 356.92017 * 14 12 10
16 16 Si 1.86807 * 119.99888 * 176.92419 * 14 12 10
17 17 H 1.48501 * 109.47127 * 359.97438 * 16 14 12
18 18 H 1.48500 * 109.47325 * 119.99848 * 16 14 12
19 19 H 1.48504 * 109.47065 * 240.00185 * 16 14 12
20 20 C 1.53003 * 109.47426 * 261.93007 * 10 9 8
21 21 Cl 1.80305 * 109.46946 * 65.69649 * 20 10 9
22 22 H 1.09006 * 109.46875 * 270.26512 * 1 2 3
23 23 H 1.08997 * 109.47204 * 30.26253 * 1 2 3
24 24 H 1.09001 * 109.47782 * 150.26941 * 1 2 3
25 25 H 1.08003 * 120.39292 * 180.02562 * 6 4 3
26 26 H 1.08002 * 120.79931 * 179.97438 * 7 6 4
27 27 H 0.96996 * 119.99894 * 6.44980 * 15 14 12
28 28 H 1.08995 * 109.47558 * 185.69892 * 20 10 9
29 29 H 1.09000 * 109.47205 * 305.69963 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1594 1.1460 0.0000
4 6 3.4776 1.1946 -0.0053
5 35 4.3495 2.8725 -0.0121
6 6 4.2307 0.0337 -0.0055
7 6 3.5844 -1.1913 -0.0005
8 6 2.1929 -1.2052 0.0055
9 8 1.5156 -2.3836 0.0103
10 6 2.2952 -3.5798 0.0693
11 1 3.2774 -3.3532 0.4839
12 6 1.6005 -4.5895 0.9461
13 1 0.9302 -5.3144 0.5084
14 6 1.8206 -4.5877 2.3072
15 7 2.6825 -3.7449 2.8329
16 14 0.8945 -5.7826 3.4046
17 1 -0.0101 -6.6179 2.5744
18 1 1.8636 -6.6562 4.1139
19 1 0.0934 -5.0232 4.3981
20 6 2.4564 -4.1535 -1.3399
21 17 3.4334 -3.0175 -2.3431
22 1 -0.3633 0.0048 1.0277
23 1 -0.3633 0.8876 -0.5179
24 1 -0.3635 -0.8924 -0.5096
25 1 5.3096 0.0823 -0.0095
26 1 4.1468 -2.1133 -0.0009
27 1 3.0935 -3.0630 2.2789
28 1 2.9632 -5.1168 -1.2843
29 1 1.4740 -4.2854 -1.7932
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001228705774.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:03:22
Heat of formation + Delta-G solvation = -39.856059 kcal
Electronic energy + Delta-G solvation = -17083.959115 eV
Core-core repulsion = 14078.515879 eV
Total energy + Delta-G solvation = -3005.443236 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 318.972 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.74598 -39.37222 -36.86749 -35.47984 -34.30432 -33.08260 -31.90320 -30.88299
-28.20623 -26.78771 -25.00329 -23.36156 -22.61280 -19.52414 -19.20550 -17.82122
-16.88101 -16.68614 -15.94121 -15.76709 -15.68528 -15.19967 -14.66680 -14.36923
-13.98556 -13.93473 -13.70677 -13.27468 -13.09742 -12.81505 -12.74449 -12.24468
-11.92270 -11.77779 -11.53130 -11.43942 -11.26945 -11.09539 -10.80701 -10.64957
-10.51212 -9.09119 -8.86387 -6.72059 -0.05242 0.09826 0.31710 1.27934
1.54835 1.60779 1.78965 2.28839 2.52111 2.54906 3.18364 3.32600
3.59236 3.82710 3.91143 4.01879 4.09016 4.31691 4.44713 4.60845
4.72784 4.77627 4.84317 4.99511 5.08429 5.37417 5.55917 5.93948
6.28891 6.46783 6.71648 7.15052 8.50413
Molecular weight = 318.97amu
Principal moments of inertia in cm(-1)
A = 0.018082 B = 0.004691 C = 0.004247
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1548.146497 B = 5967.143817 C = 6591.683264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.075 3.925
3 N -0.440 5.440
4 C 0.056 3.944
5 Br 0.001 6.999
6 C -0.100 4.100
7 C -0.159 4.159
8 C 0.109 3.891
9 O -0.312 6.312
10 C 0.168 3.832
11 H 0.043 0.957
12 C -0.607 4.607
13 H 0.071 0.929
14 C -0.007 4.007
15 N -0.907 5.907
16 Si 1.122 2.878
17 H -0.263 1.263
18 H -0.275 1.275
19 H -0.284 1.284
20 C -0.023 4.023
21 Cl -0.208 7.208
22 H 0.075 0.925
23 H 0.088 0.912
24 H 0.077 0.923
25 H 0.165 0.835
26 H 0.144 0.856
27 H 0.262 0.738
28 H 0.114 0.886
29 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.131 6.836 -6.126 9.424
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.067 4.067
3 N -0.152 5.152
4 C -0.160 4.160
5 Br 0.084 6.916
6 C -0.122 4.122
7 C -0.186 4.186
8 C 0.058 3.942
9 O -0.224 6.224
10 C 0.115 3.885
11 H 0.061 0.939
12 C -0.643 4.643
13 H 0.089 0.911
14 C -0.210 4.210
15 N -0.543 5.543
16 Si 0.942 3.058
17 H -0.187 1.187
18 H -0.200 1.200
19 H -0.210 1.210
20 C -0.085 4.085
21 Cl -0.182 7.182
22 H 0.093 0.907
23 H 0.107 0.893
24 H 0.096 0.904
25 H 0.182 0.818
26 H 0.162 0.838
27 H 0.073 0.927
28 H 0.132 0.868
29 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 1.738 7.717 -4.705 9.204
hybrid contribution 0.865 -0.472 -1.573 1.856
sum 2.603 7.245 -6.277 9.933
Atomic orbital electron populations
1.20510 0.86520 1.03737 1.03243 1.21042 0.98346 0.85090 1.02187
1.67200 1.08786 1.28191 1.11031 1.22663 0.91456 0.92783 1.09093
1.96641 1.74548 1.22588 1.97821 1.21935 1.02209 0.90123 0.97943
1.21875 0.93810 0.99605 1.03317 1.20369 0.91852 0.88939 0.93003
1.86572 1.38504 1.12197 1.85176 1.20801 0.93859 0.81565 0.92285
0.93928 1.22260 1.32524 1.15137 0.94380 0.91093 1.27466 0.94714
1.00387 0.98456 1.70886 1.25120 1.17588 1.40659 0.82870 0.75201
0.73611 0.74094 1.18733 1.20017 1.20972 1.25074 0.97790 0.94164
0.91487 1.98681 1.76171 1.68634 1.74670 0.90674 0.89301 0.90394
0.81795 0.83846 0.92709 0.86770 0.88332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.72 9.96 71.24 0.71 -2.01 15
2 C 0.07 2.91 6.80 42.66 0.29 3.20 15
3 N -0.44 -16.56 10.23 -178.49 -1.83 -18.38 15
4 C 0.06 1.94 7.16 84.71 0.61 2.55 15
5 Br 0.00 0.02 33.86 -20.37 -0.69 -0.67 15
6 C -0.10 -3.39 9.83 22.37 0.22 -3.17 15
7 C -0.16 -6.12 7.38 22.55 0.17 -5.95 15
8 C 0.11 4.50 6.16 22.59 0.14 4.64 15
9 O -0.31 -13.93 8.75 -92.68 -0.81 -14.74 15
10 C 0.17 7.42 1.90 29.85 0.06 7.48 15
11 H 0.04 2.02 3.90 -2.39 -0.01 2.01 15
12 C -0.61 -29.53 8.69 25.60 0.22 -29.31 15
13 H 0.07 3.33 7.81 -2.91 -0.02 3.31 15
14 C -0.01 -0.35 5.46 84.66 0.46 0.11 15
15 N -0.91 -49.93 13.61 21.45 0.29 -49.64 15
16 Si 1.12 44.61 29.90 68.60 2.05 46.66 15
17 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15
18 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15
19 H -0.28 -11.32 7.11 99.48 0.71 -10.62 15
20 C -0.02 -0.81 6.31 71.98 0.45 -0.36 15
21 Cl -0.21 -7.05 25.95 -2.72 -0.07 -7.12 15
22 H 0.07 2.42 8.14 -2.38 -0.02 2.40 15
23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15
24 H 0.08 2.56 7.52 -2.39 -0.02 2.54 15
25 H 0.16 4.49 8.06 -2.91 -0.02 4.47 15
26 H 0.14 5.59 5.12 -2.91 -0.01 5.57 15
27 H 0.26 14.56 6.66 -92.71 -0.62 13.94 15
28 H 0.11 3.77 8.14 -2.39 -0.02 3.75 15
29 H 0.10 3.37 8.14 -2.39 -0.02 3.35 15
Total: -1.00 -55.75 284.89 3.61 -52.14
By element:
Atomic # 1 Polarization: 13.24 SS G_CDS: 1.34 Total: 14.58 kcal
Atomic # 6 Polarization: -26.15 SS G_CDS: 3.33 Total: -22.82 kcal
Atomic # 7 Polarization: -66.48 SS G_CDS: -1.53 Total: -68.02 kcal
Atomic # 8 Polarization: -13.93 SS G_CDS: -0.81 Total: -14.74 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.05 Total: 46.66 kcal
Atomic # 17 Polarization: -7.05 SS G_CDS: -0.07 Total: -7.12 kcal
Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal
Total: -55.75 3.61 -52.14 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001228705774.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.279 kcal
(2) G-P(sol) polarization free energy of solvation -55.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.135 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds