Wall clock time and date at job start Tue Mar 31 2020 12:03:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38623 * 120.81065 * 2 1
4 4 C 1.38169 * 119.24908 * 180.27887 * 3 2 1
5 5 N 1.31907 * 120.89229 * 359.71829 * 4 3 2
6 6 C 1.31874 * 121.76722 * 0.02562 * 5 4 3
7 7 Br 1.89105 * 119.66666 * 179.97438 * 6 5 4
8 8 C 1.38859 * 120.66083 * 0.02562 * 6 5 4
9 9 O 1.35932 * 120.47587 * 179.97438 * 8 6 5
10 10 C 1.42896 * 116.99881 * 96.96959 * 9 8 6
11 11 H 1.09001 * 109.47458 * 23.54011 * 10 9 8
12 12 C 1.50700 * 109.47346 * 143.54505 * 10 9 8
13 13 H 1.07996 * 120.00013 * 5.32978 * 12 10 9
14 14 C 1.37879 * 120.00222 * 185.33071 * 12 10 9
15 15 N 1.31511 * 119.99781 * 9.29076 * 14 12 10
16 16 Si 1.86800 * 119.99925 * 189.29429 * 14 12 10
17 17 H 1.48504 * 109.46972 * 179.97438 * 16 14 12
18 18 H 1.48497 * 109.46932 * 299.99346 * 16 14 12
19 19 H 1.48493 * 109.47189 * 59.99733 * 16 14 12
20 20 C 1.53009 * 109.46966 * 263.54282 * 10 9 8
21 21 Cl 1.80293 * 109.47072 * 296.27950 * 20 10 9
22 22 H 1.09003 * 109.47004 * 270.24752 * 1 2 3
23 23 H 1.09003 * 109.47558 * 30.24336 * 1 2 3
24 24 H 1.09003 * 109.47334 * 150.24942 * 1 2 3
25 25 H 1.08008 * 120.37590 * 0.02562 * 3 2 1
26 26 H 1.07992 * 119.55827 * 179.70271 * 4 3 2
27 27 H 0.97002 * 120.00046 * 356.41026 * 15 14 12
28 28 H 1.09003 * 109.46818 * 56.28038 * 20 10 9
29 29 H 1.08998 * 109.46927 * 176.27877 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2170 1.1906 0.0000
4 6 3.5982 1.1529 -0.0059
5 7 4.2443 0.0030 -0.0059
6 6 3.6070 -1.1515 -0.0008
7 35 4.5931 -2.7651 -0.0019
8 6 2.2191 -1.1941 0.0042
9 8 1.5659 -2.3863 0.0088
10 6 1.1232 -2.8785 1.2752
11 1 1.0125 -2.0460 1.9701
12 6 -0.2035 -3.5733 1.1082
13 1 -0.6217 -3.7090 0.1218
14 6 -0.8836 -4.0359 2.2148
15 7 -0.4719 -3.7141 3.4216
16 14 -2.3898 -5.1197 1.9998
17 1 -2.9343 -5.4808 3.3334
18 1 -3.4221 -4.3846 1.2257
19 1 -2.0101 -6.3556 1.2695
20 6 2.1518 -3.8686 1.8254
21 17 2.2551 -5.2980 0.7313
22 1 -0.3633 0.0044 1.0277
23 1 -0.3634 0.8878 -0.5176
24 1 -0.3634 -0.8922 -0.5100
25 1 1.6965 2.1369 0.0004
26 1 4.1563 2.0774 -0.0108
27 1 0.3397 -3.1950 3.5349
28 1 3.1268 -3.3847 1.8840
29 1 1.8472 -4.1938 2.8202
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001229208748.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:03:45
Heat of formation + Delta-G solvation = -17.442986 kcal
Electronic energy + Delta-G solvation = -17291.409260 eV
Core-core repulsion = 14286.937928 eV
Total energy + Delta-G solvation = -3004.471332 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 318.972 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.38691 -37.67612 -34.85980 -33.75823 -33.47067 -31.46762 -29.63498 -28.66577
-27.44791 -25.08612 -23.07413 -21.98875 -21.09079 -17.67927 -17.16270 -16.85993
-15.97261 -14.92079 -14.23956 -13.88397 -13.63911 -13.42255 -13.29213 -12.83416
-12.66441 -12.53797 -12.43616 -11.81977 -11.53781 -10.96544 -10.82116 -10.61649
-10.30747 -10.17266 -9.88043 -9.39421 -9.35183 -9.20380 -9.19053 -8.56508
-8.48361 -8.41843 -6.61232 -4.33280 0.95477 1.22873 1.66363 3.35321
3.41124 3.44175 3.57648 3.60605 4.20313 4.44338 4.59014 4.81112
5.05717 5.12658 5.17099 5.42055 5.64711 5.88408 5.93580 5.96995
6.03299 6.24114 6.30375 6.40621 6.59402 6.64865 7.63745 7.75850
7.98004 8.45640 8.56918 9.33277 10.74867
Molecular weight = 318.97amu
Principal moments of inertia in cm(-1)
A = 0.016922 B = 0.007340 C = 0.005474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1654.237001 B = 3813.680694 C = 5113.865236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.060 4.060
3 C -0.151 4.151
4 C 0.085 3.915
5 N -0.456 5.456
6 C 0.092 3.908
7 Br 0.004 6.996
8 C 0.099 3.901
9 O -0.306 6.306
10 C 0.211 3.789
11 H 0.028 0.972
12 C -0.582 4.582
13 H 0.067 0.933
14 C 0.031 3.969
15 N -0.904 5.904
16 Si 1.071 2.929
17 H -0.282 1.282
18 H -0.286 1.286
19 H -0.282 1.282
20 C -0.046 4.046
21 Cl -0.184 7.184
22 H 0.080 0.920
23 H 0.066 0.934
24 H 0.089 0.911
25 H 0.140 0.860
26 H 0.162 0.838
27 H 0.265 0.735
28 H 0.066 0.934
29 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.577 7.635 -4.983 11.242
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.069 4.069
3 C -0.172 4.172
4 C -0.074 4.074
5 N -0.168 5.168
6 C -0.124 4.124
7 Br 0.089 6.911
8 C 0.049 3.951
9 O -0.222 6.222
10 C 0.157 3.843
11 H 0.045 0.955
12 C -0.619 4.619
13 H 0.086 0.914
14 C -0.173 4.173
15 N -0.540 5.540
16 Si 0.898 3.102
17 H -0.207 1.207
18 H -0.212 1.212
19 H -0.208 1.208
20 C -0.110 4.110
21 Cl -0.158 7.158
22 H 0.099 0.901
23 H 0.085 0.915
24 H 0.108 0.892
25 H 0.158 0.842
26 H 0.179 0.821
27 H 0.076 0.924
28 H 0.084 0.916
29 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 6.598 5.985 -4.371 9.923
hybrid contribution 0.388 1.291 -0.641 1.493
sum 6.986 7.276 -5.012 11.263
Atomic orbital electron populations
1.20758 0.88695 1.03760 1.03654 1.20864 0.98219 0.91821 0.96034
1.22090 0.95253 0.98496 1.01324 1.22628 0.91811 0.95371 0.97608
1.67397 1.40449 0.97211 1.11786 1.23491 0.90836 0.93258 1.04834
1.96768 1.73625 1.23747 1.96982 1.19495 0.89470 0.88474 0.97640
1.86171 1.72454 1.30468 1.33074 1.20468 0.93047 0.91479 0.79279
0.95459 1.21704 1.02967 1.40466 0.96806 0.91450 1.25805 1.02925
0.96829 0.91716 1.70908 1.23704 1.36281 1.23120 0.83487 0.74494
0.76245 0.75936 1.20720 1.21210 1.20814 1.25170 1.00843 0.89262
0.95726 1.98618 1.98782 1.48015 1.70366 0.90101 0.91465 0.89202
0.84214 0.82121 0.92423 0.91571 0.88787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.71 9.71 36.00 0.35 -1.37 15
2 C -0.06 -0.99 5.93 -104.19 -0.62 -1.60 15
3 C -0.15 -1.98 9.81 -39.46 -0.39 -2.37 15
4 C 0.08 1.13 11.18 -17.54 -0.20 0.94 15
5 N -0.46 -7.64 10.32 -11.53 -0.12 -7.76 15
6 C 0.09 1.71 7.18 -17.30 -0.12 1.58 15
7 Br 0.00 0.08 30.02 -68.01 -2.04 -1.96 15
8 C 0.10 1.91 5.54 -39.06 -0.22 1.69 15
9 O -0.31 -6.70 8.03 -19.53 -0.16 -6.86 15
10 C 0.21 4.90 1.99 -27.88 -0.06 4.84 15
11 H 0.03 0.68 7.21 -51.93 -0.37 0.30 15
12 C -0.58 -14.82 7.94 -34.44 -0.27 -15.10 15
13 H 0.07 1.78 7.83 -52.49 -0.41 1.37 15
14 C 0.03 0.82 5.23 -17.82 -0.09 0.72 15
15 N -0.90 -24.62 13.13 55.43 0.73 -23.89 15
16 Si 1.07 23.81 29.91 -169.99 -5.09 18.73 15
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15
18 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15
19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15
20 C -0.05 -1.02 5.65 37.16 0.21 -0.81 15
21 Cl -0.18 -4.06 27.75 -51.86 -1.44 -5.50 15
22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15
23 H 0.07 0.80 8.10 -51.93 -0.42 0.38 15
24 H 0.09 1.58 7.62 -51.93 -0.40 1.18 15
25 H 0.14 1.32 8.06 -52.48 -0.42 0.90 15
26 H 0.16 1.52 8.06 -52.49 -0.42 1.09 15
27 H 0.26 7.10 5.91 -40.82 -0.24 6.86 15
28 H 0.07 1.36 5.70 -51.93 -0.30 1.06 15
29 H 0.09 2.21 6.42 -51.93 -0.33 1.88 15
LS Contribution 283.70 15.07 4.28 4.28
Total: -1.00 -28.09 283.70 -7.78 -35.87
By element:
Atomic # 1 Polarization: 1.10 SS G_CDS: -2.54 Total: -1.43 kcal
Atomic # 6 Polarization: -10.07 SS G_CDS: -1.40 Total: -11.47 kcal
Atomic # 7 Polarization: -32.25 SS G_CDS: 0.61 Total: -31.64 kcal
Atomic # 8 Polarization: -6.70 SS G_CDS: -0.16 Total: -6.86 kcal
Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.73 kcal
Atomic # 17 Polarization: -4.06 SS G_CDS: -1.44 Total: -5.50 kcal
Atomic # 35 Polarization: 0.08 SS G_CDS: -2.04 Total: -1.96 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -28.09 -7.78 -35.87 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229208748.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.423 kcal
(2) G-P(sol) polarization free energy of solvation -28.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds