Wall clock time and date at job start Tue Mar 31 2020 12:03:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38623 * 120.81065 * 2 1
4 4 C 1.38169 * 119.24908 * 180.27887 * 3 2 1
5 5 N 1.31907 * 120.89229 * 359.71829 * 4 3 2
6 6 C 1.31874 * 121.76722 * 0.02562 * 5 4 3
7 7 Br 1.89105 * 119.66666 * 179.97438 * 6 5 4
8 8 C 1.38859 * 120.66083 * 0.02562 * 6 5 4
9 9 O 1.35932 * 120.47587 * 179.97438 * 8 6 5
10 10 C 1.42896 * 116.99881 * 96.96959 * 9 8 6
11 11 H 1.09001 * 109.47458 * 23.54011 * 10 9 8
12 12 C 1.50700 * 109.47346 * 143.54505 * 10 9 8
13 13 H 1.07996 * 120.00013 * 5.32978 * 12 10 9
14 14 C 1.37879 * 120.00222 * 185.33071 * 12 10 9
15 15 N 1.31511 * 119.99781 * 9.29076 * 14 12 10
16 16 Si 1.86800 * 119.99925 * 189.29429 * 14 12 10
17 17 H 1.48504 * 109.46972 * 179.97438 * 16 14 12
18 18 H 1.48497 * 109.46932 * 299.99346 * 16 14 12
19 19 H 1.48493 * 109.47189 * 59.99733 * 16 14 12
20 20 C 1.53009 * 109.46966 * 263.54282 * 10 9 8
21 21 Cl 1.80293 * 109.47072 * 296.27950 * 20 10 9
22 22 H 1.09003 * 109.47004 * 270.24752 * 1 2 3
23 23 H 1.09003 * 109.47558 * 30.24336 * 1 2 3
24 24 H 1.09003 * 109.47334 * 150.24942 * 1 2 3
25 25 H 1.08008 * 120.37590 * 0.02562 * 3 2 1
26 26 H 1.07992 * 119.55827 * 179.70271 * 4 3 2
27 27 H 0.97002 * 120.00046 * 356.41026 * 15 14 12
28 28 H 1.09003 * 109.46818 * 56.28038 * 20 10 9
29 29 H 1.08998 * 109.46927 * 176.27877 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2170 1.1906 0.0000
4 6 3.5982 1.1529 -0.0059
5 7 4.2443 0.0030 -0.0059
6 6 3.6070 -1.1515 -0.0008
7 35 4.5931 -2.7651 -0.0019
8 6 2.2191 -1.1941 0.0042
9 8 1.5659 -2.3863 0.0088
10 6 1.1232 -2.8785 1.2752
11 1 1.0125 -2.0460 1.9701
12 6 -0.2035 -3.5733 1.1082
13 1 -0.6217 -3.7090 0.1218
14 6 -0.8836 -4.0359 2.2148
15 7 -0.4719 -3.7141 3.4216
16 14 -2.3898 -5.1197 1.9998
17 1 -2.9343 -5.4808 3.3334
18 1 -3.4221 -4.3846 1.2257
19 1 -2.0101 -6.3556 1.2695
20 6 2.1518 -3.8686 1.8254
21 17 2.2551 -5.2980 0.7313
22 1 -0.3633 0.0044 1.0277
23 1 -0.3634 0.8878 -0.5176
24 1 -0.3634 -0.8922 -0.5100
25 1 1.6965 2.1369 0.0004
26 1 4.1563 2.0774 -0.0108
27 1 0.3397 -3.1950 3.5349
28 1 3.1268 -3.3847 1.8840
29 1 1.8472 -4.1938 2.8202
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001229208748.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:03:45
Heat of formation + Delta-G solvation = -33.198669 kcal
Electronic energy + Delta-G solvation = -17292.092478 eV
Core-core repulsion = 14286.937928 eV
Total energy + Delta-G solvation = -3005.154550 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 318.972 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.68557 -39.21821 -36.63456 -35.49425 -34.88813 -32.81960 -31.27480 -30.07673
-28.75821 -27.02723 -24.41305 -23.39007 -22.68017 -19.45836 -18.79374 -18.17658
-17.15230 -16.53012 -15.64016 -15.53334 -15.21320 -15.12689 -14.79355 -14.35303
-14.03389 -13.86809 -13.76442 -13.68469 -12.85825 -12.69628 -12.55670 -11.99331
-11.94581 -11.86538 -11.34445 -11.17823 -11.00156 -10.75114 -10.50273 -10.45773
-10.23781 -9.76947 -8.67110 -6.39005 -0.29255 -0.01538 0.33965 1.56332
1.63577 1.64643 1.82632 2.31839 2.53343 2.88472 3.12596 3.42074
3.70614 3.82043 4.01251 4.09046 4.20389 4.28652 4.51709 4.57830
4.68896 4.70822 4.79902 5.10527 5.21498 5.43532 5.74339 6.04893
6.46908 6.55630 6.72806 7.33603 8.70217
Molecular weight = 318.97amu
Principal moments of inertia in cm(-1)
A = 0.016922 B = 0.007340 C = 0.005474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1654.237001 B = 3813.680694 C = 5113.865236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.072 4.072
3 C -0.131 4.131
4 C 0.095 3.905
5 N -0.472 5.472
6 C 0.078 3.922
7 Br -0.006 7.006
8 C 0.059 3.941
9 O -0.319 6.319
10 C 0.222 3.778
11 H 0.011 0.989
12 C -0.584 4.584
13 H 0.052 0.948
14 C -0.004 4.004
15 N -0.925 5.925
16 Si 1.105 2.895
17 H -0.283 1.283
18 H -0.268 1.268
19 H -0.277 1.277
20 C -0.038 4.038
21 Cl -0.182 7.182
22 H 0.069 0.931
23 H 0.107 0.893
24 H 0.058 0.942
25 H 0.188 0.812
26 H 0.209 0.791
27 H 0.258 0.742
28 H 0.080 0.920
29 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.579 9.767 -5.610 13.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.081 4.081
3 C -0.151 4.151
4 C -0.063 4.063
5 N -0.185 5.185
6 C -0.138 4.138
7 Br 0.079 6.921
8 C 0.009 3.991
9 O -0.235 6.235
10 C 0.167 3.833
11 H 0.028 0.972
12 C -0.621 4.621
13 H 0.070 0.930
14 C -0.204 4.204
15 N -0.562 5.562
16 Si 0.927 3.073
17 H -0.209 1.209
18 H -0.193 1.193
19 H -0.203 1.203
20 C -0.102 4.102
21 Cl -0.156 7.156
22 H 0.087 0.913
23 H 0.126 0.874
24 H 0.077 0.923
25 H 0.205 0.795
26 H 0.226 0.774
27 H 0.068 0.932
28 H 0.098 0.902
29 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 6.614 8.125 -5.018 11.616
hybrid contribution 0.461 0.815 -0.503 1.063
sum 7.075 8.940 -5.522 12.667
Atomic orbital electron populations
1.20708 0.88328 1.04208 1.02999 1.21138 0.98744 0.92151 0.96040
1.22576 0.95220 0.98974 0.98316 1.23516 0.92513 0.95766 0.94549
1.67457 1.40914 0.97596 1.12524 1.23436 0.90510 0.93867 1.05968
1.96725 1.73574 1.24806 1.97044 1.19804 0.90040 0.88409 1.00805
1.86128 1.73022 1.32310 1.32052 1.20120 0.92449 0.90846 0.79887
0.97188 1.21817 1.04059 1.40314 0.95948 0.92954 1.26836 1.04862
0.97318 0.91372 1.70988 1.23982 1.37464 1.23805 0.83058 0.72756
0.75403 0.76034 1.20868 1.19307 1.20277 1.25030 1.01325 0.89103
0.94749 1.98612 1.98776 1.47900 1.70298 0.91278 0.87445 0.92259
0.79458 0.77401 0.93184 0.90150 0.90386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -3.11 9.71 71.24 0.69 -2.42 15
2 C -0.07 -2.22 5.93 -19.58 -0.12 -2.34 15
3 C -0.13 -2.87 9.81 22.35 0.22 -2.65 15
4 C 0.10 2.15 11.18 84.66 0.95 3.09 15
5 N -0.47 -14.77 10.32 -190.39 -1.96 -16.73 15
6 C 0.08 2.81 7.18 84.84 0.61 3.42 15
7 Br -0.01 -0.21 30.02 -20.37 -0.61 -0.82 15
8 C 0.06 2.25 5.54 22.61 0.13 2.37 15
9 O -0.32 -14.26 8.03 -92.79 -0.75 -15.00 15
10 C 0.22 10.52 1.99 29.85 0.06 10.58 15
11 H 0.01 0.53 7.21 -2.39 -0.02 0.52 15
12 C -0.58 -30.33 7.94 25.60 0.20 -30.12 15
13 H 0.05 2.83 7.83 -2.91 -0.02 2.81 15
14 C 0.00 -0.22 5.23 84.66 0.44 0.22 15
15 N -0.93 -51.15 13.13 21.45 0.28 -50.86 15
16 Si 1.11 47.87 29.91 68.60 2.05 49.92 15
17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15
18 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15
19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15
20 C -0.04 -1.73 5.65 71.99 0.41 -1.32 15
21 Cl -0.18 -8.11 27.75 -2.72 -0.08 -8.18 15
22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15
23 H 0.11 2.20 8.10 -2.39 -0.02 2.18 15
24 H 0.06 2.10 7.62 -2.39 -0.02 2.08 15
25 H 0.19 2.32 8.06 -2.91 -0.02 2.29 15
26 H 0.21 2.65 8.06 -2.91 -0.02 2.62 15
27 H 0.26 14.20 5.91 -92.71 -0.55 13.65 15
28 H 0.08 3.37 5.70 -2.39 -0.01 3.36 15
29 H 0.08 3.77 6.42 -2.39 -0.02 3.76 15
Total: -1.00 -61.95 283.70 3.92 -58.02
By element:
Atomic # 1 Polarization: 1.42 SS G_CDS: 1.40 Total: 2.82 kcal
Atomic # 6 Polarization: -22.74 SS G_CDS: 3.59 Total: -19.15 kcal
Atomic # 7 Polarization: -65.91 SS G_CDS: -1.68 Total: -67.60 kcal
Atomic # 8 Polarization: -14.26 SS G_CDS: -0.75 Total: -15.00 kcal
Atomic # 14 Polarization: 47.87 SS G_CDS: 2.05 Total: 49.92 kcal
Atomic # 17 Polarization: -8.11 SS G_CDS: -0.08 Total: -8.18 kcal
Atomic # 35 Polarization: -0.21 SS G_CDS: -0.61 Total: -0.82 kcal
Total: -61.95 3.92 -58.02 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229208748.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.824 kcal
(2) G-P(sol) polarization free energy of solvation -61.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.123 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds