Wall clock time and date at job start Tue Mar 31 2020 12:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48503 * 109.47347 * 240.00397 * 3 2 1 5 5 H 1.48503 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47390 * 120.00402 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.17193 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93312 * 220.14123 * 10 9 7 12 12 C 1.46893 * 111.00179 * 138.70389 * 11 10 9 13 13 C 1.50699 * 109.47517 * 169.99798 * 12 11 10 14 14 C 1.38234 * 119.99663 * 104.99913 * 13 12 11 15 15 C 1.38328 * 120.02814 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.99613 * 179.97438 * 15 14 13 17 17 C 1.38358 * 120.01305 * 359.97438 * 15 14 13 18 18 C 1.38295 * 119.98748 * 0.02562 * 17 15 14 19 19 Cl 1.73595 * 120.01490 * 179.72761 * 18 17 15 20 20 C 1.38309 * 119.99542 * 285.02405 * 13 12 11 21 21 Cl 1.73607 * 120.00340 * 359.97438 * 20 13 12 22 22 C 1.47477 * 87.83748 * 27.01036 * 11 10 9 23 23 H 0.97000 * 119.99786 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.26112 * 312.95533 * 9 7 2 25 25 H 1.08998 * 113.47155 * 105.37527 * 10 9 7 26 26 H 1.08996 * 113.52592 * 334.91485 * 10 9 7 27 27 H 1.09007 * 109.47081 * 49.99811 * 12 11 10 28 28 H 1.08995 * 109.47408 * 290.00075 * 12 11 10 29 29 H 1.08001 * 119.98465 * 359.97438 * 14 13 12 30 30 H 1.07997 * 120.01193 * 180.02562 * 17 15 14 31 31 H 1.08994 * 113.47784 * 87.75860 * 22 11 10 32 32 H 1.09003 * 113.48001 * 218.22422 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1496 -3.7438 -0.0018 11 7 1.2042 -4.3598 -0.9515 12 6 1.9189 -5.0892 -2.0073 13 6 0.9361 -5.9026 -2.8096 14 6 0.5653 -5.4869 -4.0748 15 6 -0.3372 -6.2327 -4.8116 16 17 -0.8029 -5.7096 -6.4000 17 6 -0.8688 -7.3955 -4.2828 18 6 -0.4982 -7.8118 -3.0172 19 17 -1.1701 -9.2669 -2.3502 20 6 0.4050 -7.0645 -2.2799 21 17 0.8708 -7.5864 -0.6910 22 6 0.8507 -2.9987 -1.3959 23 1 -0.4850 0.8401 0.0004 24 1 0.4451 -2.5309 0.7327 25 1 2.1896 -4.2514 0.9620 26 1 3.1378 -3.5666 -0.4262 27 1 2.6562 -5.7528 -1.5553 28 1 2.4230 -4.3788 -2.6625 29 1 0.9796 -4.5791 -4.4878 30 1 -1.5731 -7.9779 -4.8582 31 1 1.4919 -2.6218 -2.1925 32 1 -0.2102 -2.8748 -1.6136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231600254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:22 Heat of formation + Delta-G solvation = 36.364820 kcal Electronic energy + Delta-G solvation = -19368.693167 eV Core-core repulsion = 16021.691967 eV Total energy + Delta-G solvation = -3347.001200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.999 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00478 -38.70961 -37.02374 -36.65057 -36.24024 -33.18639 -32.12451 -30.61373 -28.73383 -25.81416 -24.82853 -23.20141 -23.02817 -21.21795 -18.67287 -17.52651 -16.65722 -16.52635 -16.08412 -15.03567 -14.77137 -14.60760 -14.38527 -13.95262 -13.86979 -13.06663 -12.71331 -12.58744 -12.26424 -12.04565 -11.86827 -11.72209 -11.38476 -11.18535 -11.14498 -10.97443 -10.93379 -10.79299 -10.60033 -10.33658 -9.84070 -9.43492 -9.02810 -8.91346 -8.68146 -8.46344 -8.08901 -6.08334 -4.13442 0.65966 0.80146 1.56687 1.85045 2.26817 3.11497 3.27756 3.33568 3.35250 4.30247 4.37794 4.70660 4.76967 4.81853 5.08542 5.17879 5.26893 5.43758 5.48205 5.75407 5.79202 5.92860 6.11304 6.19414 6.28696 6.39904 6.63607 6.64576 7.08621 7.09732 7.68866 7.85469 7.98855 8.33131 8.89799 9.51956 11.01064 Molecular weight = 319.00amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003798 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.053377 B = 7371.174258 C = 8691.691351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.002 4.002 11 N -0.472 5.472 12 C 0.052 3.948 13 C -0.028 4.028 14 C -0.088 4.088 15 C -0.022 4.022 16 Cl -0.056 7.056 17 C -0.101 4.101 18 C -0.024 4.024 19 Cl -0.044 7.044 20 C -0.008 4.008 21 Cl -0.029 7.029 22 C 0.003 3.997 23 H 0.263 0.737 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -16.200 -9.484 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.130 4.130 11 N -0.194 5.194 12 C -0.076 4.076 13 C -0.030 4.030 14 C -0.108 4.108 15 C -0.049 4.049 16 Cl -0.027 7.027 17 C -0.121 4.121 18 C -0.051 4.051 19 Cl -0.015 7.015 20 C -0.037 4.037 21 Cl 0.000 7.000 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.072 0.928 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.979 -16.702 -9.199 19.093 hybrid contribution 0.924 1.255 -0.499 1.636 sum -0.055 -15.447 -9.698 18.239 Atomic orbital electron populations 1.69958 1.05990 1.26907 1.49343 1.25008 0.94798 0.99132 0.94547 0.86689 0.79661 0.83151 0.78680 1.20246 1.21239 1.20143 1.20979 0.92690 0.90222 1.51753 0.92463 1.20071 0.94267 0.90750 0.92479 1.24009 0.95658 0.97532 0.95843 1.68958 1.26963 1.14185 1.09306 1.21698 0.93648 0.97450 0.94793 1.19705 0.97323 0.92648 0.93319 1.21086 0.96593 0.99889 0.93234 1.20706 0.99560 0.96064 0.88559 1.98388 1.91276 1.90112 1.22890 1.20754 1.01251 0.96209 0.93845 1.20529 0.98782 0.91493 0.94345 1.98388 1.83932 1.34037 1.85174 1.20662 0.98448 0.95699 0.88862 1.98398 1.90563 1.89483 1.21531 1.24173 1.00342 0.86497 1.01527 0.92770 0.91748 0.91796 0.92665 0.89816 0.92313 0.83538 0.83350 0.92750 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.02 13.26 55.43 0.74 -24.29 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.63 8.83 -34.44 -0.30 -13.93 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.04 1.05 3.76 -91.24 -0.34 0.70 16 10 C 0.00 -0.04 7.25 -7.54 -0.05 -0.09 16 11 N -0.47 -8.86 6.21 -246.09 -1.53 -10.39 16 12 C 0.05 0.81 4.27 -4.98 -0.02 0.78 16 13 C -0.03 -0.40 5.47 -104.60 -0.57 -0.97 16 14 C -0.09 -1.14 9.45 -39.55 -0.37 -1.51 16 15 C -0.02 -0.26 6.32 -39.50 -0.25 -0.51 16 16 Cl -0.06 -0.60 28.96 -51.86 -1.50 -2.10 16 17 C -0.10 -1.13 9.61 -39.52 -0.38 -1.51 16 18 C -0.02 -0.29 6.32 -39.47 -0.25 -0.54 16 19 Cl -0.04 -0.51 27.96 -51.86 -1.45 -1.96 16 20 C -0.01 -0.11 6.32 -39.46 -0.25 -0.36 16 21 Cl -0.03 -0.41 26.55 -51.86 -1.38 -1.79 16 22 C 0.00 0.07 7.28 -7.54 -0.05 0.02 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 27 H 0.08 1.21 7.52 -51.92 -0.39 0.81 16 28 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 29 H 0.15 1.74 8.00 -52.49 -0.42 1.32 16 30 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 32 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -26.91 320.60 -11.47 -38.38 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.21 Total: -2.07 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.95 Total: -16.19 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.79 Total: -34.68 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -4.33 Total: -5.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.91 -11.47 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231600254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.740 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds