Wall clock time and date at job start Tue Mar 31 2020 12:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48503 * 109.47347 * 240.00397 * 3 2 1 5 5 H 1.48503 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47390 * 120.00402 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99935 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.17193 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93312 * 220.14123 * 10 9 7 12 12 C 1.46893 * 111.00179 * 138.70389 * 11 10 9 13 13 C 1.50699 * 109.47517 * 169.99798 * 12 11 10 14 14 C 1.38234 * 119.99663 * 104.99913 * 13 12 11 15 15 C 1.38328 * 120.02814 * 180.02562 * 14 13 12 16 16 Cl 1.73599 * 119.99613 * 179.97438 * 15 14 13 17 17 C 1.38358 * 120.01305 * 359.97438 * 15 14 13 18 18 C 1.38295 * 119.98748 * 0.02562 * 17 15 14 19 19 Cl 1.73595 * 120.01490 * 179.72761 * 18 17 15 20 20 C 1.38309 * 119.99542 * 285.02405 * 13 12 11 21 21 Cl 1.73607 * 120.00340 * 359.97438 * 20 13 12 22 22 C 1.47477 * 87.83748 * 27.01036 * 11 10 9 23 23 H 0.97000 * 119.99786 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.26112 * 312.95533 * 9 7 2 25 25 H 1.08998 * 113.47155 * 105.37527 * 10 9 7 26 26 H 1.08996 * 113.52592 * 334.91485 * 10 9 7 27 27 H 1.09007 * 109.47081 * 49.99811 * 12 11 10 28 28 H 1.08995 * 109.47408 * 290.00075 * 12 11 10 29 29 H 1.08001 * 119.98465 * 359.97438 * 14 13 12 30 30 H 1.07997 * 120.01193 * 180.02562 * 17 15 14 31 31 H 1.08994 * 113.47784 * 87.75860 * 22 11 10 32 32 H 1.09003 * 113.48001 * 218.22422 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1496 -3.7438 -0.0018 11 7 1.2042 -4.3598 -0.9515 12 6 1.9189 -5.0892 -2.0073 13 6 0.9361 -5.9026 -2.8096 14 6 0.5653 -5.4869 -4.0748 15 6 -0.3372 -6.2327 -4.8116 16 17 -0.8029 -5.7096 -6.4000 17 6 -0.8688 -7.3955 -4.2828 18 6 -0.4982 -7.8118 -3.0172 19 17 -1.1701 -9.2669 -2.3502 20 6 0.4050 -7.0645 -2.2799 21 17 0.8708 -7.5864 -0.6910 22 6 0.8507 -2.9987 -1.3959 23 1 -0.4850 0.8401 0.0004 24 1 0.4451 -2.5309 0.7327 25 1 2.1896 -4.2514 0.9620 26 1 3.1378 -3.5666 -0.4262 27 1 2.6562 -5.7528 -1.5553 28 1 2.4230 -4.3788 -2.6625 29 1 0.9796 -4.5791 -4.4878 30 1 -1.5731 -7.9779 -4.8582 31 1 1.4919 -2.6218 -2.1925 32 1 -0.2102 -2.8748 -1.6136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231600254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:21 Heat of formation + Delta-G solvation = 22.292062 kcal Electronic energy + Delta-G solvation = -19369.303408 eV Core-core repulsion = 16021.691967 eV Total energy + Delta-G solvation = -3347.611441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.999 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.19363 -40.13708 -37.95552 -37.63536 -37.24167 -34.88683 -33.58601 -31.60200 -30.23166 -27.47736 -26.50639 -24.71126 -24.02324 -22.44696 -20.43819 -18.78924 -18.29343 -17.57973 -17.12017 -16.70198 -16.26223 -15.91951 -15.69944 -15.34365 -15.10969 -14.35069 -13.89255 -13.71912 -13.63634 -13.32300 -13.24760 -13.06206 -12.87828 -12.80322 -12.44100 -12.21025 -12.11304 -12.07301 -11.92781 -11.72499 -11.55753 -11.17660 -10.85232 -10.47565 -10.02142 -9.69996 -9.65421 -8.12304 -6.23508 -0.33448 -0.18572 0.62716 0.85981 1.28085 1.45404 1.46395 1.54034 2.10960 2.44812 3.17088 3.23595 3.46420 3.75934 3.82557 3.90791 4.08821 4.26439 4.39372 4.49429 4.51930 4.59592 4.73856 4.85307 4.88331 4.96988 5.00795 5.20173 5.28474 5.50649 5.66006 5.88222 6.31346 6.38298 6.86337 7.45280 8.97087 Molecular weight = 319.00amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.003798 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.053377 B = 7371.174258 C = 8691.691351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.021 3.979 10 C 0.014 3.986 11 N -0.469 5.469 12 C 0.055 3.945 13 C -0.044 4.044 14 C -0.091 4.091 15 C -0.022 4.022 16 Cl -0.043 7.043 17 C -0.091 4.091 18 C -0.029 4.029 19 Cl -0.035 7.035 20 C -0.020 4.020 21 Cl -0.037 7.037 22 C 0.020 3.980 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.058 0.942 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -16.863 -10.735 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.114 4.114 11 N -0.191 5.191 12 C -0.073 4.073 13 C -0.046 4.046 14 C -0.111 4.111 15 C -0.050 4.050 16 Cl -0.014 7.014 17 C -0.110 4.110 18 C -0.057 4.057 19 Cl -0.006 7.006 20 C -0.048 4.048 21 Cl -0.008 7.008 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.171 0.829 30 H 0.190 0.810 31 H 0.076 0.924 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.210 -17.383 -10.452 20.284 hybrid contribution 0.647 1.370 -0.153 1.523 sum 0.438 -16.013 -10.606 19.212 Atomic orbital electron populations 1.70093 1.07545 1.27543 1.50884 1.25790 0.95505 1.02570 0.94398 0.85669 0.78372 0.78935 0.79035 1.19258 1.21361 1.19532 1.21346 0.93056 0.91328 1.50952 0.92046 1.20014 0.94493 0.92091 0.93213 1.23815 0.95520 0.95323 0.96763 1.68860 1.27457 1.12667 1.10156 1.21684 0.94012 0.97524 0.94099 1.19591 0.98037 0.93009 0.93923 1.21195 0.96709 1.00211 0.92944 1.20760 0.99150 0.96036 0.89023 1.98397 1.91089 1.90022 1.21895 1.21028 1.00744 0.95876 0.93352 1.20621 0.98585 0.91795 0.94685 1.98392 1.83693 1.33374 1.85144 1.20785 0.99151 0.96104 0.88760 1.98391 1.90697 1.89553 1.22143 1.23858 0.98984 0.88169 0.99951 0.92957 0.95531 0.91043 0.91406 0.88633 0.91485 0.82859 0.80975 0.92421 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 13.26 21.45 0.28 -52.99 16 2 C 0.02 0.91 5.46 84.65 0.46 1.37 16 3 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -27.91 8.83 25.60 0.23 -27.68 16 8 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.02 1.03 3.76 -11.19 -0.04 0.99 16 10 C 0.01 0.56 7.25 83.58 0.61 1.16 16 11 N -0.47 -17.35 6.21 -932.48 -5.79 -23.14 16 12 C 0.05 1.61 4.27 85.56 0.37 1.97 16 13 C -0.04 -1.18 5.47 -19.85 -0.11 -1.29 16 14 C -0.09 -2.20 9.45 22.29 0.21 -1.99 16 15 C -0.02 -0.48 6.32 22.32 0.14 -0.34 16 16 Cl -0.04 -0.83 28.96 -2.72 -0.08 -0.91 16 17 C -0.09 -1.83 9.61 22.31 0.21 -1.62 16 18 C -0.03 -0.67 6.32 22.34 0.14 -0.53 16 19 Cl -0.04 -0.75 27.96 -2.72 -0.08 -0.82 16 20 C -0.02 -0.52 6.32 22.35 0.14 -0.38 16 21 Cl -0.04 -1.02 26.55 -2.72 -0.07 -1.09 16 22 C 0.02 0.85 7.28 83.58 0.61 1.46 16 23 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 24 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 25 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.07 2.48 7.87 -2.39 -0.02 2.46 16 27 H 0.10 2.58 7.52 -2.38 -0.02 2.56 16 28 H 0.07 1.87 7.11 -2.39 -0.02 1.85 16 29 H 0.15 3.41 8.00 -2.91 -0.02 3.39 16 30 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.06 2.44 7.38 -2.39 -0.02 2.42 16 32 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -57.42 320.60 0.41 -57.01 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.15 Total: 4.60 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 2.97 Total: -26.88 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -5.51 Total: -76.13 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.23 Total: -2.82 kcal Total: -57.42 0.41 -57.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231600254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.303 kcal (2) G-P(sol) polarization free energy of solvation -57.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds