Wall clock time and date at job start Tue Mar 31 2020 13:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47005 * 239.99597 * 3 2 1 5 5 H 1.48501 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47272 * 119.99553 * 3 2 1 7 7 C 1.38649 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00551 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.35710 * 117.00141 * 185.05394 * 9 7 2 11 11 C 1.39419 * 120.38761 * 354.51141 * 10 9 7 12 12 C 1.38230 * 118.45238 * 179.97438 * 11 10 9 13 13 C 1.39417 * 119.14794 * 0.02562 * 12 11 10 14 14 C 1.48306 * 119.64976 * 179.97438 * 13 12 11 15 15 C 1.39501 * 120.04538 * 4.99744 * 14 13 12 16 16 C 1.38227 * 120.16427 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.87344 * 179.97438 * 16 15 14 18 18 C 1.38174 * 120.25305 * 359.97438 * 16 15 14 19 19 C 1.39666 * 120.09258 * 0.02562 * 18 16 15 20 20 C 1.47753 * 120.08123 * 179.97438 * 19 18 16 21 21 O 1.21460 * 119.99665 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99667 * 0.02562 * 20 19 18 23 23 C 1.39111 * 120.04652 * 185.24907 * 14 13 12 24 24 N 1.32678 * 120.70172 * 0.26623 * 13 12 11 25 25 C 1.31669 * 121.67975 * 359.44334 * 24 13 12 26 26 H 0.97001 * 119.99981 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.77394 * 359.96290 * 11 10 9 28 28 H 1.08003 * 120.42625 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.91822 * 359.95183 * 15 14 13 30 30 H 1.08004 * 119.95206 * 180.02562 * 18 16 15 31 31 H 0.96707 * 116.98999 * 180.02562 * 22 20 19 32 32 H 1.07994 * 120.12895 * 0.02562 * 23 14 13 33 33 H 1.08000 * 119.60278 * 180.29042 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3683 0.0005 10 6 2.0700 -3.5040 0.1076 11 6 3.4629 -3.4462 0.0968 12 6 4.1720 -4.6275 0.2089 13 6 3.4751 -5.8291 0.3277 14 6 4.2247 -7.1031 0.4480 15 6 5.6161 -7.0882 0.5471 16 6 6.3171 -8.2742 0.6599 17 17 8.0486 -8.2468 0.7820 18 6 5.6450 -9.4813 0.6759 19 6 4.2521 -9.5087 0.5774 20 6 3.5337 -10.7997 0.5939 21 8 2.3223 -10.8217 0.5087 22 8 4.2223 -11.9522 0.7046 23 6 3.5416 -8.3150 0.4571 24 7 2.1484 -5.8456 0.3284 25 6 1.4431 -4.7382 0.2289 26 1 -0.4850 0.8401 -0.0004 27 1 3.9760 -2.5005 0.0028 28 1 5.2520 -4.6197 0.2037 29 1 6.1469 -6.1478 0.5352 30 1 6.1976 -10.4050 0.7647 31 1 3.7086 -12.7715 0.7106 32 1 2.4648 -8.3309 0.3761 33 1 0.3644 -4.7902 0.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243324303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:21 Heat of formation + Delta-G solvation = -65.959129 kcal Electronic energy + Delta-G solvation = -22285.616077 eV Core-core repulsion = 18495.901463 eV Total energy + Delta-G solvation = -3789.714615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63536 -39.86638 -38.80199 -37.32219 -36.57821 -36.23640 -32.85104 -32.33973 -31.55127 -30.96781 -28.54012 -25.82830 -25.13724 -23.47230 -22.87731 -21.50696 -20.88296 -18.55667 -18.15566 -17.90110 -17.10290 -16.25712 -16.07508 -15.81614 -15.43642 -14.90971 -14.64163 -14.63233 -14.28536 -13.83862 -13.66108 -13.59103 -13.22728 -12.60206 -12.58901 -12.05944 -11.96136 -11.86147 -11.80781 -11.50283 -11.42270 -11.24397 -11.18299 -10.75579 -10.69862 -9.98380 -9.54507 -9.22886 -9.04694 -8.96023 -8.87153 -7.40384 -6.75851 -4.31280 0.40087 0.83737 1.84366 1.87627 1.97853 2.48247 2.77638 2.97320 2.99050 3.02103 3.54420 3.72415 4.36297 4.47514 4.63801 4.80100 4.87592 4.97519 5.05209 5.07762 5.12688 5.37857 5.47672 5.64281 5.76136 5.87732 5.91502 6.10658 6.21856 6.31865 6.36162 6.54291 6.68954 6.83300 7.03271 7.27459 7.66026 7.67883 8.55902 8.67651 9.29965 10.39619 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002803 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.060161 B = 9986.906299 C =11460.920656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.044 3.956 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.096 0.904 9 O -0.152 6.152 10 C 0.110 3.890 11 C -0.204 4.204 12 C -0.093 4.093 13 C 0.025 3.975 14 C 0.008 3.992 15 C -0.081 4.081 16 C -0.043 4.043 17 Cl -0.067 7.067 18 C -0.071 4.071 19 C -0.117 4.117 20 C 0.530 3.470 21 O -0.505 6.505 22 O -0.513 6.513 23 C -0.032 4.032 24 N -0.427 5.427 25 C 0.039 3.961 26 H 0.277 0.723 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.414 0.586 32 H 0.155 0.845 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -15.038 1.213 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.114 0.886 9 O -0.051 6.051 10 C 0.051 3.949 11 C -0.229 4.229 12 C -0.113 4.113 13 C -0.108 4.108 14 C 0.006 3.994 15 C -0.100 4.100 16 C -0.070 4.070 17 Cl -0.038 7.038 18 C -0.090 4.090 19 C -0.118 4.118 20 C 0.374 3.626 21 O -0.393 6.393 22 O -0.325 6.325 23 C -0.051 4.051 24 N -0.136 5.136 25 C -0.126 4.126 26 H 0.087 0.913 27 H 0.158 0.842 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.273 0.727 32 H 0.173 0.827 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.494 -15.197 1.241 19.095 hybrid contribution 0.795 1.159 -0.078 1.408 sum 12.290 -14.038 1.163 18.694 Atomic orbital electron populations 1.70019 1.06154 1.28678 1.42898 1.25416 0.95946 0.99222 0.95764 0.85691 0.78809 0.79026 0.79503 1.19165 1.19939 1.19152 1.21423 0.92082 0.80497 1.52969 0.88616 1.83953 1.34508 1.11547 1.75103 1.20553 0.91030 0.89344 0.93927 1.21450 0.93845 0.99007 1.08622 1.21659 0.99812 0.92068 0.97712 1.18756 0.89552 0.90713 1.11764 1.18289 0.91167 0.92003 0.97909 1.21342 0.93330 0.97576 0.97783 1.20551 0.84966 0.94547 1.06911 1.98373 1.09827 1.98901 1.96665 1.21212 0.92895 0.97427 0.97499 1.18826 0.92815 0.90532 1.09658 1.20756 0.85307 0.84235 0.72299 1.90925 1.14994 1.87806 1.45616 1.84553 1.45177 1.17238 1.85556 1.21533 1.01981 0.89138 0.92441 1.67284 1.06915 1.30055 1.09360 1.21760 0.99784 0.85108 1.05976 0.91295 0.84243 0.85957 0.83985 0.83717 0.72717 0.82709 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.94 13.67 55.48 0.76 -22.18 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.95 18.77 29.55 -169.99 -5.02 13.74 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.39 -10.04 9.50 30.88 0.29 -9.74 16 8 H 0.10 2.21 5.25 -52.48 -0.28 1.93 16 9 O -0.15 -3.96 9.76 0.22 0.00 -3.96 16 10 C 0.11 2.45 6.67 -38.87 -0.26 2.19 16 11 C -0.20 -4.00 9.25 -39.14 -0.36 -4.36 16 12 C -0.09 -1.57 9.44 -39.15 -0.37 -1.94 16 13 C 0.03 0.45 6.72 -82.92 -0.56 -0.11 16 14 C 0.01 0.11 5.87 -104.96 -0.62 -0.50 16 15 C -0.08 -1.00 9.18 -39.11 -0.36 -1.36 16 16 C -0.04 -0.49 6.31 -39.61 -0.25 -0.74 16 17 Cl -0.07 -0.67 28.94 -51.86 -1.50 -2.17 16 18 C -0.07 -0.78 9.39 -39.07 -0.37 -1.15 16 19 C -0.12 -1.47 5.87 -105.03 -0.62 -2.09 16 20 C 0.53 6.38 8.27 34.62 0.29 6.66 16 21 O -0.50 -7.61 17.13 -19.23 -0.33 -7.94 16 22 O -0.51 -4.23 12.67 -40.52 -0.51 -4.74 16 23 C -0.03 -0.47 9.11 -38.81 -0.35 -0.82 16 24 N -0.43 -8.28 9.42 -9.61 -0.09 -8.37 16 25 C 0.04 0.80 11.14 -17.35 -0.19 0.60 16 26 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.14 2.63 5.75 -52.49 -0.30 2.33 16 28 H 0.12 1.63 6.20 -52.48 -0.33 1.31 16 29 H 0.14 1.55 6.19 -52.49 -0.32 1.23 16 30 H 0.15 1.31 7.60 -52.48 -0.40 0.91 16 31 H 0.41 1.51 9.11 45.56 0.42 1.92 16 32 H 0.16 2.48 7.12 -52.49 -0.37 2.11 16 33 H 0.16 2.97 8.06 -52.49 -0.42 2.54 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -29.87 318.28 -6.86 -36.73 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -1.14 Total: 6.42 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.82 Total: -12.33 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.67 Total: -30.55 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.84 Total: -16.64 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.87 -6.86 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243324303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.229 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds