Wall clock time and date at job start Tue Mar 31 2020 13:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47005 * 239.99597 * 3 2 1 5 5 H 1.48501 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47272 * 119.99553 * 3 2 1 7 7 C 1.38649 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00551 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.35710 * 117.00141 * 185.05394 * 9 7 2 11 11 C 1.39419 * 120.38761 * 354.51141 * 10 9 7 12 12 C 1.38230 * 118.45238 * 179.97438 * 11 10 9 13 13 C 1.39417 * 119.14794 * 0.02562 * 12 11 10 14 14 C 1.48306 * 119.64976 * 179.97438 * 13 12 11 15 15 C 1.39501 * 120.04538 * 4.99744 * 14 13 12 16 16 C 1.38227 * 120.16427 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.87344 * 179.97438 * 16 15 14 18 18 C 1.38174 * 120.25305 * 359.97438 * 16 15 14 19 19 C 1.39666 * 120.09258 * 0.02562 * 18 16 15 20 20 C 1.47753 * 120.08123 * 179.97438 * 19 18 16 21 21 O 1.21460 * 119.99665 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99667 * 0.02562 * 20 19 18 23 23 C 1.39111 * 120.04652 * 185.24907 * 14 13 12 24 24 N 1.32678 * 120.70172 * 0.26623 * 13 12 11 25 25 C 1.31669 * 121.67975 * 359.44334 * 24 13 12 26 26 H 0.97001 * 119.99981 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.77394 * 359.96290 * 11 10 9 28 28 H 1.08003 * 120.42625 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.91822 * 359.95183 * 15 14 13 30 30 H 1.08004 * 119.95206 * 180.02562 * 18 16 15 31 31 H 0.96707 * 116.98999 * 180.02562 * 22 20 19 32 32 H 1.07994 * 120.12895 * 0.02562 * 23 14 13 33 33 H 1.08000 * 119.60278 * 180.29042 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3683 0.0005 10 6 2.0700 -3.5040 0.1076 11 6 3.4629 -3.4462 0.0968 12 6 4.1720 -4.6275 0.2089 13 6 3.4751 -5.8291 0.3277 14 6 4.2247 -7.1031 0.4480 15 6 5.6161 -7.0882 0.5471 16 6 6.3171 -8.2742 0.6599 17 17 8.0486 -8.2468 0.7820 18 6 5.6450 -9.4813 0.6759 19 6 4.2521 -9.5087 0.5774 20 6 3.5337 -10.7997 0.5939 21 8 2.3223 -10.8217 0.5087 22 8 4.2223 -11.9522 0.7046 23 6 3.5416 -8.3150 0.4571 24 7 2.1484 -5.8456 0.3284 25 6 1.4431 -4.7382 0.2289 26 1 -0.4850 0.8401 -0.0004 27 1 3.9760 -2.5005 0.0028 28 1 5.2520 -4.6197 0.2037 29 1 6.1469 -6.1478 0.5352 30 1 6.1976 -10.4050 0.7647 31 1 3.7086 -12.7715 0.7106 32 1 2.4648 -8.3309 0.3761 33 1 0.3644 -4.7902 0.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243324303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:21 Heat of formation + Delta-G solvation = -84.720125 kcal Electronic energy + Delta-G solvation = -22286.429615 eV Core-core repulsion = 18495.901463 eV Total energy + Delta-G solvation = -3790.528152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72741 -41.25787 -39.98231 -38.83811 -37.48614 -37.11645 -34.51847 -33.69327 -33.01326 -32.07492 -29.98240 -27.55452 -26.18252 -24.85812 -24.29072 -22.75471 -21.98894 -20.09913 -19.45567 -18.94212 -18.56971 -17.46235 -17.27335 -16.76995 -16.74612 -16.30223 -15.97887 -15.94490 -15.78837 -15.26332 -14.80130 -14.79167 -14.45245 -14.16431 -14.01763 -13.62504 -13.23450 -13.03226 -12.77635 -12.68882 -12.60158 -12.45943 -12.19688 -12.16724 -11.74871 -11.71816 -11.00945 -10.71690 -10.50216 -10.41680 -9.99059 -8.95399 -8.54952 -6.22322 -0.63186 -0.30283 0.32654 0.62043 0.96863 1.37014 1.39126 1.49199 1.53236 1.93798 2.12976 2.42965 2.86314 3.02532 3.15555 3.37676 3.64235 3.75814 3.95431 3.96014 4.00178 4.05731 4.20288 4.36109 4.45202 4.55663 4.84319 4.87595 4.94259 5.06040 5.20771 5.25664 5.40561 5.44120 5.51478 5.72719 5.88976 6.87380 6.91226 7.00135 7.59178 8.65951 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002803 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.060161 B = 9986.906299 C =11460.920656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.419 4.419 8 H 0.111 0.889 9 O -0.207 6.207 10 C 0.083 3.917 11 C -0.196 4.196 12 C -0.089 4.089 13 C 0.049 3.951 14 C -0.021 4.021 15 C -0.062 4.062 16 C -0.045 4.045 17 Cl -0.045 7.045 18 C -0.044 4.044 19 C -0.124 4.124 20 C 0.538 3.462 21 O -0.543 6.543 22 O -0.497 6.497 23 C -0.040 4.040 24 N -0.442 5.442 25 C 0.026 3.974 26 H 0.277 0.723 27 H 0.148 0.852 28 H 0.170 0.830 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.436 0.564 32 H 0.132 0.868 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.948 -17.259 1.537 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.215 4.215 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.129 0.871 9 O -0.110 6.110 10 C 0.028 3.972 11 C -0.222 4.222 12 C -0.108 4.108 13 C -0.086 4.086 14 C -0.022 4.022 15 C -0.082 4.082 16 C -0.072 4.072 17 Cl -0.016 7.016 18 C -0.063 4.063 19 C -0.125 4.125 20 C 0.383 3.617 21 O -0.435 6.435 22 O -0.311 6.311 23 C -0.059 4.059 24 N -0.151 5.151 25 C -0.135 4.135 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.188 0.812 29 H 0.181 0.819 30 H 0.190 0.810 31 H 0.299 0.701 32 H 0.150 0.850 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 16.142 -17.502 1.569 23.861 hybrid contribution -0.286 1.177 -0.125 1.218 sum 15.856 -16.325 1.443 22.803 Atomic orbital electron populations 1.70166 1.08175 1.29416 1.46872 1.26650 0.96801 1.02887 0.95187 0.84624 0.77442 0.73905 0.80183 1.17845 1.19893 1.17878 1.21913 0.92935 0.80897 1.53679 0.87135 1.83952 1.35756 1.12426 1.78861 1.20942 0.92463 0.89014 0.94751 1.21717 0.92873 1.00565 1.07088 1.22075 1.02053 0.90413 0.96290 1.19455 0.89149 0.92614 1.07423 1.18147 0.92196 0.90557 1.01261 1.21501 0.92044 0.99073 0.95551 1.20597 0.86116 0.94177 1.06264 1.98396 1.07867 1.98850 1.96497 1.21512 0.92039 0.98535 0.94182 1.18849 0.93572 0.90213 1.09895 1.20631 0.84649 0.84991 0.71402 1.90926 1.16651 1.88396 1.47544 1.84489 1.44794 1.17290 1.84511 1.21407 1.01201 0.90268 0.93004 1.67385 1.08189 1.29396 1.10145 1.21838 1.00196 0.85213 1.06299 0.91430 0.83413 0.81240 0.81910 0.81021 0.70094 0.85003 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.76 13.67 21.61 0.30 -52.46 16 2 C -0.02 -0.82 5.49 84.83 0.47 -0.36 16 3 Si 1.02 39.43 29.55 68.60 2.03 41.46 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.42 -22.35 9.50 67.92 0.64 -21.70 16 8 H 0.11 5.22 5.25 -2.91 -0.02 5.20 16 9 O -0.21 -11.51 9.76 -22.13 -0.22 -11.73 16 10 C 0.08 3.86 6.67 22.73 0.15 4.01 16 11 C -0.20 -7.61 9.25 22.55 0.21 -7.40 16 12 C -0.09 -2.79 9.44 22.55 0.21 -2.57 16 13 C 0.05 1.66 6.72 41.98 0.28 1.94 16 14 C -0.02 -0.56 5.87 -20.08 -0.12 -0.68 16 15 C -0.06 -1.28 9.18 22.57 0.21 -1.07 16 16 C -0.04 -0.80 6.31 22.25 0.14 -0.66 16 17 Cl -0.05 -0.68 28.94 -2.72 -0.08 -0.76 16 18 C -0.04 -0.76 9.39 22.60 0.21 -0.55 16 19 C -0.12 -2.78 5.87 -20.13 -0.12 -2.90 16 20 C 0.54 11.71 8.27 70.34 0.58 12.29 16 21 O -0.54 -15.96 17.13 19.97 0.34 -15.62 16 22 O -0.50 -6.33 12.67 -56.20 -0.71 -7.04 16 23 C -0.04 -1.10 9.11 22.77 0.21 -0.89 16 24 N -0.44 -17.39 9.42 -184.31 -1.74 -19.13 16 25 C 0.03 1.14 11.14 84.89 0.95 2.08 16 26 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.15 5.44 5.75 -2.91 -0.02 5.42 16 28 H 0.17 3.66 6.20 -2.91 -0.02 3.64 16 29 H 0.16 2.63 6.19 -2.91 -0.02 2.61 16 30 H 0.17 2.12 7.60 -2.91 -0.02 2.10 16 31 H 0.44 1.61 9.11 -74.05 -0.67 0.93 16 32 H 0.13 4.30 7.12 -2.91 -0.02 4.28 16 33 H 0.15 6.43 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -70.28 318.28 4.49 -65.79 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.54 Total: 17.94 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.03 Total: -18.45 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.44 Total: -71.59 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.59 Total: -34.38 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -70.28 4.49 -65.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243324303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.928 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds