Wall clock time and date at job start Tue Mar 31 2020 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39597 * 120.45345 * 89.05347 * 3 2 1 5 5 C 1.37701 * 120.18793 * 179.97438 * 4 3 2 6 6 C 1.39834 * 121.16815 * 0.02562 * 5 4 3 7 7 C 1.48278 * 119.53868 * 179.97438 * 6 5 4 8 8 C 1.39421 * 120.09567 * 309.99817 * 7 6 5 9 9 C 1.38105 * 119.88567 * 179.97438 * 8 7 6 10 10 F 1.35102 * 119.95608 * 180.02562 * 9 8 7 11 11 C 1.38806 * 120.08565 * 359.97438 * 9 8 7 12 12 F 1.35104 * 119.90248 * 179.97438 * 11 9 8 13 13 C 1.38454 * 120.19237 * 359.97438 * 11 9 8 14 14 C 1.38133 * 120.11308 * 359.78937 * 13 11 9 15 15 Cl 1.73602 * 120.03870 * 180.23626 * 14 13 11 16 16 C 1.38634 * 120.92592 * 0.02562 * 6 5 4 17 17 C 1.40590 * 119.73130 * 359.97438 * 16 6 5 18 18 C 1.40843 * 120.55219 * 180.02562 * 17 16 6 19 19 H 1.07998 * 119.99957 * 155.89025 * 18 17 16 20 20 C 1.40232 * 119.99953 * 335.89844 * 18 17 16 21 21 N 1.30658 * 120.00284 * 341.78306 * 20 18 17 22 22 Si 1.86803 * 119.99834 * 161.78671 * 20 18 17 23 23 H 1.48503 * 109.47229 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46888 * 120.00002 * 22 20 18 25 25 H 1.48500 * 109.46888 * 239.99536 * 22 20 18 26 26 H 1.08002 * 119.90731 * 0.25562 * 4 3 2 27 27 H 1.08000 * 119.41225 * 180.02562 * 5 4 3 28 28 H 1.08005 * 120.05633 * 359.95600 * 8 7 6 29 29 H 1.08004 * 119.94270 * 180.02562 * 13 11 9 30 30 H 1.07997 * 120.13068 * 179.97438 * 16 6 5 31 31 H 0.96997 * 120.00308 * 185.03139 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -0.0189 -1.2032 5 6 4.6525 -0.0177 -1.1968 6 6 5.3707 0.0025 0.0028 7 6 6.8530 0.0026 -0.0325 8 6 7.5339 -0.9341 -0.8088 9 6 8.9146 -0.9298 -0.8389 10 9 9.5759 -1.8365 -1.5912 11 6 9.6238 0.0056 -0.0982 12 9 10.9745 0.0062 -0.1299 13 6 8.9511 0.9381 0.6732 14 6 7.5702 0.9441 0.7054 15 17 6.7285 2.1181 1.6683 16 6 4.7162 0.0213 1.2248 17 6 3.3108 0.0208 1.2631 18 6 2.6281 0.0403 2.4948 19 1 1.6193 0.4224 2.5471 20 6 3.2583 -0.4363 3.6534 21 7 4.3063 -1.2105 3.5556 22 14 2.5995 0.0357 5.3364 23 1 1.4136 0.9149 5.1751 24 1 2.2098 -1.1909 6.0772 25 1 3.6517 0.7587 6.0949 26 1 2.7414 -0.0305 -2.1419 27 1 5.1873 -0.0325 -2.1351 28 1 6.9825 -1.6621 -1.3855 29 1 9.5069 1.6643 1.2476 30 1 5.2836 0.0364 2.1435 31 1 4.6982 -1.5992 4.3532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245021427.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:14 Heat of formation + Delta-G solvation = -41.819513 kcal Electronic energy + Delta-G solvation = -22690.448030 eV Core-core repulsion = 18790.692672 eV Total energy + Delta-G solvation = -3899.755358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.027 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.56372 -49.63734 -40.56055 -38.99786 -37.38540 -36.93794 -35.82385 -33.32187 -31.81061 -31.57658 -29.74355 -27.52879 -25.02139 -24.36624 -22.76344 -22.49194 -19.57731 -19.15616 -18.84938 -18.30391 -18.12467 -17.40723 -17.01512 -16.38073 -16.05139 -15.74296 -15.69433 -15.20802 -15.10541 -14.75524 -14.55964 -14.50522 -14.31461 -13.99596 -13.55987 -13.44838 -13.33869 -13.09394 -12.82627 -12.66066 -12.45790 -12.17656 -12.16081 -12.07937 -11.61076 -11.37879 -11.16666 -10.24483 -9.79590 -9.44818 -9.01455 -8.81848 -6.49369 -0.47133 -0.20400 0.45301 1.03118 1.05120 1.37243 1.48240 1.50468 2.06365 2.08234 2.13466 2.42547 2.66844 2.68483 3.18451 3.41659 3.54828 3.66656 3.73161 3.91066 4.28180 4.43801 4.57515 4.61289 4.69146 4.81199 4.95573 5.00283 5.17476 5.29140 5.44845 5.52781 5.78660 5.96983 6.04606 6.15949 6.44172 6.68157 6.79797 7.00483 8.08611 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.004754 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.319917 B = 5887.882201 C = 7017.163171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.304 3.696 3 C -0.205 4.205 4 C -0.027 4.027 5 C -0.218 4.218 6 C -0.028 4.028 7 C -0.003 4.003 8 C -0.100 4.100 9 C 0.073 3.927 10 F -0.128 7.128 11 C 0.069 3.931 12 F -0.126 7.126 13 C -0.107 4.107 14 C -0.021 4.021 15 Cl -0.042 7.042 16 C -0.137 4.137 17 C 0.126 3.874 18 C -0.460 4.460 19 H 0.069 0.931 20 C 0.051 3.949 21 N -0.780 5.780 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.261 1.261 25 H -0.253 1.253 26 H 0.127 0.873 27 H 0.133 0.867 28 H 0.171 0.829 29 H 0.178 0.822 30 H 0.129 0.871 31 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.272 2.315 -2.628 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C -0.004 4.004 3 C -0.211 4.211 4 C -0.047 4.047 5 C -0.237 4.237 6 C -0.029 4.029 7 C -0.004 4.004 8 C -0.118 4.118 9 C 0.053 3.947 10 F -0.107 7.107 11 C 0.048 3.952 12 F -0.105 7.105 13 C -0.126 4.126 14 C -0.049 4.049 15 Cl -0.013 7.013 16 C -0.156 4.156 17 C 0.121 3.879 18 C -0.487 4.487 19 H 0.087 0.913 20 C -0.171 4.171 21 N -0.403 5.403 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.186 1.186 25 H -0.177 1.177 26 H 0.145 0.855 27 H 0.151 0.849 28 H 0.188 0.812 29 H 0.196 0.804 30 H 0.146 0.854 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.738 2.284 -2.435 12.204 hybrid contribution 0.163 -0.062 0.780 0.799 sum 11.901 2.222 -1.656 12.219 Atomic orbital electron populations 1.81005 1.13362 1.16235 1.10726 1.26068 0.93032 0.90650 0.90653 1.17241 0.82862 1.25731 0.95311 1.20655 0.94061 0.95026 0.94975 1.20428 0.92799 1.14080 0.96431 1.18486 0.89481 1.00717 0.94221 1.18761 0.93503 0.93473 0.94668 1.21179 0.90889 0.99823 0.99940 1.17577 0.90463 0.90720 0.95985 1.91531 1.80697 1.64710 1.73734 1.17417 0.77433 0.98648 1.01661 1.91533 1.27680 1.95988 1.95298 1.20913 0.92039 0.99690 0.99935 1.20847 0.91927 0.94459 0.97640 1.98415 1.77715 1.55965 1.69217 1.21397 0.93037 1.04509 0.96636 1.18592 0.92124 0.86871 0.90347 1.19849 1.00772 1.35271 0.92809 0.91329 1.26616 0.93719 0.92293 1.04443 1.69661 1.17227 1.19090 1.34287 0.85362 0.79659 0.79677 0.76605 1.19125 1.18556 1.17668 0.85499 0.84873 0.81195 0.80431 0.85382 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.49 18.54 19.00 0.35 -25.14 16 2 C 0.30 14.03 14.27 88.33 1.26 15.30 16 3 C -0.21 -8.97 5.95 -19.54 -0.12 -9.09 16 4 C -0.03 -0.97 9.74 22.47 0.22 -0.75 16 5 C -0.22 -7.26 9.41 22.53 0.21 -7.05 16 6 C -0.03 -1.00 5.10 -20.13 -0.10 -1.10 16 7 C 0.00 -0.09 5.45 -20.02 -0.11 -0.20 16 8 C -0.10 -2.55 9.44 22.52 0.21 -2.34 16 9 C 0.07 1.80 7.30 22.37 0.16 1.97 16 10 F -0.13 -3.22 17.18 44.97 0.77 -2.45 16 11 C 0.07 1.64 7.31 22.46 0.16 1.80 16 12 F -0.13 -3.01 17.17 44.97 0.77 -2.24 16 13 C -0.11 -2.43 9.79 22.30 0.22 -2.22 16 14 C -0.02 -0.60 6.27 22.54 0.14 -0.46 16 15 Cl -0.04 -1.28 25.96 -2.72 -0.07 -1.35 16 16 C -0.14 -5.75 6.79 22.94 0.16 -5.60 16 17 C 0.13 5.86 5.74 -19.90 -0.11 5.74 16 18 C -0.46 -22.21 8.58 23.39 0.20 -22.01 16 19 H 0.07 3.46 7.37 -2.91 -0.02 3.44 16 20 C 0.05 2.24 5.14 85.35 0.44 2.68 16 21 N -0.78 -34.28 10.96 21.87 0.24 -34.04 16 22 Si 0.97 34.45 29.60 68.60 2.03 36.48 16 23 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 24 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 25 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 26 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 27 H 0.13 3.56 8.00 -2.91 -0.02 3.54 16 28 H 0.17 3.83 8.03 -2.91 -0.02 3.81 16 29 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.13 5.57 5.24 -2.91 -0.02 5.55 16 31 H 0.30 11.77 8.30 -92.71 -0.77 11.00 16 Total: -1.00 -51.19 310.06 8.26 -42.93 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.22 Total: 9.13 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 2.94 Total: -23.32 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.59 Total: -59.18 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.54 Total: -4.69 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -51.19 8.26 -42.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245021427.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.109 kcal (2) G-P(sol) polarization free energy of solvation -51.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds