Wall clock time and date at job start Tue Mar 31 2020 12:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39072 * 120.56203 * 217.32057 * 3 2 1 5 5 C 1.39418 * 119.80265 * 180.29955 * 4 3 2 6 6 C 1.47946 * 119.50243 * 179.70523 * 5 4 3 7 7 C 1.39652 * 120.13129 * 129.97887 * 6 5 4 8 8 C 1.37861 * 119.93726 * 180.02562 * 7 6 5 9 9 C 1.38564 * 120.20633 * 359.97438 * 8 7 6 10 10 Cl 1.73600 * 119.86262 * 180.02562 * 9 8 7 11 11 C 1.38608 * 120.26940 * 0.02562 * 9 8 7 12 12 F 1.35105 * 119.96566 * 179.97438 * 11 9 8 13 13 C 1.38384 * 120.06352 * 359.72296 * 11 9 8 14 14 F 1.35100 * 120.10381 * 180.28188 * 13 11 9 15 15 C 1.40011 * 120.99427 * 359.68700 * 5 4 3 16 16 C 1.35991 * 121.19144 * 0.04184 * 15 5 4 17 17 C 1.41049 * 120.11086 * 359.95511 * 16 15 5 18 18 C 1.40427 * 120.48767 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99821 * 154.63433 * 18 17 16 20 20 C 1.40281 * 119.99847 * 334.64575 * 18 17 16 21 21 N 1.30647 * 120.00103 * 334.59858 * 20 18 17 22 22 Si 1.86805 * 120.00091 * 154.60619 * 20 18 17 23 23 H 1.48498 * 109.47210 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47071 * 299.99963 * 22 20 18 25 25 H 1.48499 * 109.46777 * 59.99752 * 22 20 18 26 26 H 1.08000 * 120.10043 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.03561 * 359.97438 * 7 6 5 28 28 H 1.08000 * 119.89898 * 180.02562 * 8 7 6 29 29 H 1.08005 * 119.40385 * 180.02562 * 15 5 4 30 30 H 1.07995 * 119.94002 * 179.97438 * 16 15 5 31 31 H 0.97000 * 120.00109 * 354.19631 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2746 0.9533 0.7260 5 6 4.6687 0.9431 0.7098 6 6 5.4138 1.9636 1.4793 7 6 6.4417 1.5785 2.3426 8 6 7.1331 2.5328 3.0581 9 6 6.8117 3.8739 2.9232 10 17 7.6885 5.0681 3.8280 11 6 5.7930 4.2657 2.0688 12 9 5.4844 5.5749 1.9424 13 6 5.0952 3.3176 1.3413 14 9 4.1060 3.6991 0.5040 15 6 5.3742 -0.0187 -0.0234 16 6 4.7242 -0.9721 -0.7431 17 6 3.3142 -1.0068 -0.7608 18 6 2.6350 -1.9881 -1.5009 19 1 1.6360 -2.2840 -1.2162 20 6 3.2540 -2.5841 -2.6096 21 7 4.1895 -1.9432 -3.2584 22 14 2.7407 -4.2943 -3.1587 23 1 3.5397 -4.6941 -4.3448 24 1 2.9751 -5.2597 -2.0549 25 1 1.2986 -4.2882 -3.5131 26 1 2.7452 1.7020 1.2965 27 1 6.6944 0.5340 2.4502 28 1 7.9282 2.2343 3.7252 29 1 6.4541 -0.0030 -0.0176 30 1 5.2886 -1.7040 -1.3018 31 1 4.3977 -1.0244 -3.0272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245739988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:01 Heat of formation + Delta-G solvation = -49.766780 kcal Electronic energy + Delta-G solvation = -22504.351411 eV Core-core repulsion = 18604.251434 eV Total energy + Delta-G solvation = -3900.099977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.027 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.56559 -49.63804 -40.44117 -39.34313 -37.65435 -37.12160 -36.16671 -33.00527 -31.91950 -31.40433 -30.33022 -27.34375 -24.56308 -24.30340 -23.58461 -22.44339 -20.25191 -19.45603 -18.73715 -18.29819 -17.77118 -17.50047 -16.78422 -16.46150 -16.11859 -16.03777 -15.84402 -15.52149 -15.28953 -14.77119 -14.54022 -14.30192 -14.16420 -14.02280 -13.83015 -13.61042 -13.35538 -13.21949 -12.93834 -12.71574 -12.35097 -12.22727 -12.11539 -11.97228 -11.76762 -11.58742 -11.07379 -10.14527 -9.89265 -9.77409 -9.49269 -9.20966 -6.71462 -0.37370 -0.17192 0.30448 0.80000 0.84147 1.51234 1.58917 1.80295 1.90615 2.12925 2.22833 2.32313 2.54515 2.67181 3.29690 3.37559 3.40799 3.56654 3.74963 3.96440 4.10996 4.31321 4.38850 4.62759 4.82107 4.85312 4.91434 4.96918 5.13728 5.20891 5.43051 5.48558 5.57299 5.67576 5.77945 5.93470 6.08877 6.45445 6.56420 6.82666 7.75961 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.022901 B = 0.003269 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.351000 B = 8562.868993 C = 9234.371063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C 0.300 3.700 3 C -0.209 4.209 4 C 0.015 3.985 5 C -0.213 4.213 6 C -0.003 4.003 7 C -0.079 4.079 8 C -0.067 4.067 9 C -0.068 4.068 10 Cl -0.039 7.039 11 C 0.064 3.936 12 F -0.132 7.132 13 C 0.046 3.954 14 F -0.137 7.137 15 C -0.017 4.017 16 C -0.225 4.225 17 C 0.117 3.883 18 C -0.493 4.493 19 H 0.071 0.929 20 C 0.013 3.987 21 N -0.766 5.766 22 Si 1.110 2.890 23 H -0.261 1.261 24 H -0.254 1.254 25 H -0.269 1.269 26 H 0.107 0.893 27 H 0.177 0.823 28 H 0.187 0.813 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 4.057 9.402 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.009 4.009 3 C -0.215 4.215 4 C -0.006 4.006 5 C -0.214 4.214 6 C -0.004 4.004 7 C -0.097 4.097 8 C -0.085 4.085 9 C -0.095 4.095 10 Cl -0.010 7.010 11 C 0.043 3.957 12 F -0.110 7.110 13 C 0.026 3.974 14 F -0.116 7.116 15 C -0.036 4.036 16 C -0.244 4.244 17 C 0.111 3.889 18 C -0.519 4.519 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.386 5.386 22 Si 0.926 3.074 23 H -0.185 1.185 24 H -0.178 1.178 25 H -0.194 1.194 26 H 0.125 0.875 27 H 0.194 0.806 28 H 0.204 0.796 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.122 3.116 8.322 14.236 hybrid contribution -0.738 2.149 0.721 2.384 sum 10.384 5.265 9.043 14.742 Atomic orbital electron populations 1.81008 1.13159 1.12218 1.13984 1.25991 0.93007 0.91032 0.90874 1.16849 0.82956 1.04890 1.16825 1.20736 0.93479 0.93455 0.92927 1.17655 0.91190 1.02242 1.10355 1.18921 0.96301 0.88834 0.96336 1.21566 0.93016 1.02015 0.93098 1.21339 1.00129 0.87911 0.99154 1.20895 0.96737 0.92844 0.99057 1.98387 1.73967 1.56226 1.72371 1.17385 0.99031 0.77978 1.01309 1.91510 1.92377 1.32185 1.94938 1.17930 0.91548 0.92738 0.95175 1.91496 1.59147 1.91722 1.69240 1.20654 0.99602 0.91209 0.92094 1.20788 0.92707 1.03222 1.07694 1.18768 0.92607 0.88273 0.89241 1.21006 1.03298 1.16641 1.10958 0.91112 1.28512 0.91450 1.08570 0.92475 1.70504 1.21337 1.13356 1.33403 0.83067 0.77270 0.69020 0.78041 1.18486 1.17801 1.19428 0.87487 0.80587 0.79610 0.84370 0.86813 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.62 18.54 19.00 0.35 -25.27 16 2 C 0.30 14.22 14.30 88.33 1.26 15.48 16 3 C -0.21 -9.36 5.93 -19.63 -0.12 -9.48 16 4 C 0.01 0.59 8.54 22.75 0.19 0.78 16 5 C -0.21 -7.27 5.33 -19.99 -0.11 -7.38 16 6 C 0.00 -0.08 5.45 -19.99 -0.11 -0.19 16 7 C -0.08 -1.53 9.46 22.52 0.21 -1.32 16 8 C -0.07 -1.09 9.81 22.26 0.22 -0.87 16 9 C -0.07 -1.45 6.33 22.44 0.14 -1.31 16 10 Cl -0.04 -0.74 28.60 -2.72 -0.08 -0.82 16 11 C 0.06 1.76 7.27 22.39 0.16 1.92 16 12 F -0.13 -3.91 16.74 44.97 0.75 -3.15 16 13 C 0.05 1.43 7.15 22.68 0.16 1.59 16 14 F -0.14 -4.97 15.79 44.97 0.71 -4.26 16 15 C -0.02 -0.57 9.34 22.18 0.21 -0.36 16 16 C -0.23 -9.06 7.88 22.44 0.18 -8.88 16 17 C 0.12 5.33 5.46 -19.86 -0.11 5.22 16 18 C -0.49 -23.34 8.48 23.30 0.20 -23.14 16 19 H 0.07 3.49 7.45 -2.91 -0.02 3.47 16 20 C 0.01 0.57 4.95 85.37 0.42 0.99 16 21 N -0.77 -34.56 12.31 21.88 0.27 -34.29 16 22 Si 1.11 37.25 30.01 68.60 2.06 39.30 16 23 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 24 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 25 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 26 H 0.11 4.02 7.75 -2.91 -0.02 4.00 16 27 H 0.18 2.52 8.03 -2.91 -0.02 2.49 16 28 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.14 3.63 8.00 -2.91 -0.02 3.60 16 30 H 0.11 4.65 6.48 -2.91 -0.02 4.63 16 31 H 0.30 13.79 6.68 -92.71 -0.62 13.17 16 Total: -1.00 -53.99 311.43 8.35 -45.63 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.37 Total: 9.80 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 2.92 Total: -26.95 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.62 Total: -59.56 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.46 Total: -7.41 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.06 Total: 39.30 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -53.99 8.35 -45.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245739988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.132 kcal (2) G-P(sol) polarization free energy of solvation -53.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds