Wall clock time and date at job start Tue Mar 31 2020 13:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35919 * 117.00282 * 2 1 4 4 C 1.38740 * 120.04068 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.95296 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.97737 * 180.02562 * 5 4 3 7 7 C 1.38380 * 120.04723 * 0.02562 * 5 4 3 8 8 Cl 1.73605 * 119.96222 * 179.97438 * 7 5 4 9 9 C 1.38347 * 120.08434 * 0.02562 * 7 5 4 10 10 C 1.38160 * 120.04019 * 359.97438 * 9 7 5 11 11 S 1.76205 * 120.01938 * 180.02562 * 10 9 7 12 12 O 1.42104 * 106.40238 * 228.53819 * 11 10 9 13 13 O 1.42098 * 106.40335 * 1.46446 * 11 10 9 14 14 N 1.65604 * 107.21395 * 115.00296 * 11 10 9 15 15 C 1.46499 * 119.99700 * 269.99804 * 14 11 10 16 16 C 1.36938 * 120.00205 * 90.00122 * 14 11 10 17 17 H 1.08001 * 119.99778 * 22.40617 * 16 14 11 18 18 C 1.38807 * 119.99941 * 202.40368 * 16 14 11 19 19 N 1.31622 * 120.00251 * 11.11656 * 18 16 14 20 20 Si 1.86802 * 119.99833 * 191.11690 * 18 16 14 21 21 H 1.48502 * 109.47033 * 60.00000 * 20 18 16 22 22 H 1.48501 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46992 * 299.99974 * 20 18 16 24 24 H 1.09003 * 109.46832 * 300.00623 * 1 2 3 25 25 H 1.08996 * 109.46712 * 60.00426 * 1 2 3 26 26 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.02662 * 0.26223 * 4 3 2 28 28 H 1.09004 * 109.46895 * 90.00088 * 6 5 4 29 29 H 1.09000 * 109.47357 * 210.00038 * 6 5 4 30 30 H 1.08997 * 109.47257 * 330.00629 * 6 5 4 31 31 H 1.07995 * 119.97972 * 179.97438 * 9 7 5 32 32 H 1.08997 * 109.47320 * 94.22107 * 15 14 11 33 33 H 1.09007 * 109.47307 * 214.22198 * 15 14 11 34 34 H 1.09003 * 109.47519 * 334.21634 * 15 14 11 35 35 H 0.96992 * 119.99997 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9204 3.6048 0.0000 6 6 1.1011 4.8697 0.0000 7 6 3.3024 3.6762 0.0005 8 17 4.0907 5.2230 0.0005 9 6 4.0567 2.5165 0.0000 10 6 3.4312 1.2846 -0.0005 11 16 4.3925 -0.1922 -0.0005 12 8 3.8553 -1.0206 -1.0225 13 8 5.7535 0.2149 0.0349 14 7 4.0990 -0.9680 1.4328 15 6 4.9327 -0.6840 2.6035 16 6 3.0771 -1.8750 1.5237 17 1 2.7017 -2.3566 0.6329 18 6 2.5238 -2.1754 2.7608 19 7 2.8216 -1.4401 3.8110 20 14 1.3564 -3.6233 2.9350 21 1 2.0556 -4.8730 2.5417 22 1 0.9072 -3.7299 4.3464 23 1 0.1779 -3.4175 2.0552 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.2129 2.3200 0.0033 28 1 0.9033 5.1744 1.0277 29 1 1.6507 5.6587 -0.5134 30 1 0.1568 4.6910 -0.5141 31 1 5.1351 2.5742 0.0000 32 1 4.4576 0.0875 3.2094 33 1 5.0482 -1.5916 3.1961 34 1 5.9127 -0.3367 2.2761 35 1 2.4347 -1.6498 4.6753 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260783577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:04 Heat of formation + Delta-G solvation = -99.699384 kcal Electronic energy + Delta-G solvation = -23733.874407 eV Core-core repulsion = 20078.140657 eV Total energy + Delta-G solvation = -3655.733750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24519 -38.94622 -37.67111 -37.43452 -37.19615 -36.34058 -33.95856 -33.25538 -31.03673 -28.90243 -28.24172 -27.58756 -25.30400 -23.51174 -22.93175 -20.34025 -19.52924 -18.71375 -18.37801 -17.81650 -17.56901 -16.70388 -16.33464 -16.05041 -15.87762 -15.50016 -15.07352 -15.06456 -14.92850 -14.49642 -13.67314 -13.61253 -13.44142 -13.31660 -13.12582 -12.95009 -12.87596 -12.73599 -12.64876 -12.62418 -12.50879 -12.31070 -12.10959 -12.07495 -11.86497 -11.61116 -11.33189 -10.99338 -10.19362 -9.88595 -9.24202 -8.28333 -5.82219 -0.25326 0.02199 0.15078 1.07940 1.52333 1.57712 1.63993 2.19850 2.33601 2.38215 2.73089 3.01856 3.25266 3.58723 3.66204 3.82011 4.18600 4.29588 4.35995 4.41053 4.46751 4.59625 4.61741 4.71295 4.75315 4.82868 4.85018 5.05673 5.13038 5.20791 5.28449 5.46380 5.52689 5.64246 6.31583 6.50842 6.88138 7.34875 8.69069 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.005840 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.430739 B = 4793.456985 C = 5458.699810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.308 6.308 3 C 0.220 3.780 4 C -0.223 4.223 5 C 0.001 3.999 6 C -0.119 4.119 7 C -0.110 4.110 8 Cl -0.058 7.058 9 C 0.000 4.000 10 C -0.720 4.720 11 S 2.554 3.446 12 O -1.003 7.003 13 O -1.025 7.025 14 N -0.817 5.817 15 C 0.132 3.868 16 C -0.245 4.245 17 H 0.105 0.895 18 C 0.001 3.999 19 N -0.863 5.863 20 Si 0.981 3.019 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.256 1.256 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.173 0.827 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 8.912 -2.035 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.219 6.219 3 C 0.171 3.829 4 C -0.242 4.242 5 C 0.000 4.000 6 C -0.175 4.175 7 C -0.138 4.138 8 Cl -0.029 7.029 9 C -0.020 4.020 10 C -0.802 4.802 11 S 2.654 3.346 12 O -0.993 6.993 13 O -1.014 7.014 14 N -0.641 5.641 15 C -0.014 4.014 16 C -0.392 4.392 17 H 0.123 0.877 18 C -0.208 4.208 19 N -0.504 5.504 20 Si 0.804 3.196 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.180 1.180 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.190 0.810 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.480 8.816 -2.683 11.869 hybrid contribution -0.700 0.172 0.448 0.848 sum -8.180 8.989 -2.235 12.357 Atomic orbital electron populations 1.23456 0.76193 1.05774 1.02610 1.86385 1.23892 1.25566 1.86067 1.18657 0.90609 0.86049 0.87604 1.21454 1.01651 0.90221 1.10893 1.20111 0.91500 0.97023 0.91411 1.21056 0.99783 0.92198 1.04475 1.20797 0.93089 0.86608 1.13277 1.98310 1.80329 1.26987 1.97323 1.20641 1.00355 0.89387 0.91572 1.31141 1.06407 1.21369 1.21283 1.10258 0.74202 0.73211 0.76924 1.93314 1.80292 1.66809 1.58922 1.93279 1.36350 1.83736 1.88075 1.53970 1.39803 1.41852 1.28523 1.21212 0.91008 1.01890 0.87250 1.19951 1.12965 1.10403 0.95857 0.87745 1.26365 0.98120 1.01189 0.95160 1.70177 1.41435 1.37837 1.00943 0.85161 0.78726 0.77966 0.77776 1.19493 1.20120 1.18038 0.91213 0.90312 0.86974 0.81021 0.88755 0.89956 0.88463 0.84137 0.93765 0.91092 0.93183 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 9.81 113.37 1.11 1.48 16 2 O -0.31 -12.42 7.81 -83.38 -0.65 -13.07 16 3 C 0.22 8.79 6.63 22.50 0.15 8.94 16 4 C -0.22 -6.86 8.69 22.36 0.19 -6.67 16 5 C 0.00 0.02 5.88 -19.86 -0.12 -0.10 16 6 C -0.12 -2.25 9.61 71.24 0.68 -1.56 16 7 C -0.11 -3.67 6.31 22.33 0.14 -3.53 16 8 Cl -0.06 -1.60 27.29 -2.72 -0.07 -1.68 16 9 C 0.00 0.01 9.33 22.28 0.21 0.22 16 10 C -0.72 -32.00 5.92 22.36 0.13 -31.87 16 11 S 2.55 128.56 5.25 -56.49 -0.30 128.27 16 12 O -1.00 -54.91 16.09 -122.93 -1.98 -56.89 16 13 O -1.02 -53.52 15.53 -128.00 -1.99 -55.51 16 14 N -0.82 -41.13 3.31 -364.89 -1.21 -42.34 16 15 C 0.13 6.24 8.92 127.77 1.14 7.38 16 16 C -0.24 -12.31 7.98 84.03 0.67 -11.64 16 17 H 0.10 5.37 7.16 -2.91 -0.02 5.35 16 18 C 0.00 0.03 5.13 84.86 0.44 0.47 16 19 N -0.86 -41.55 10.58 21.65 0.23 -41.32 16 20 Si 0.98 36.78 29.57 68.60 2.03 38.81 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.28 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 24 H 0.07 1.66 7.66 -2.39 -0.02 1.64 16 25 H 0.08 1.66 7.66 -2.39 -0.02 1.64 16 26 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.17 3.85 6.30 -2.91 -0.02 3.84 16 28 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 1.48 6.90 -2.39 -0.02 1.47 16 30 H 0.10 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.14 5.60 7.33 -2.91 -0.02 5.57 16 32 H 0.04 2.11 7.42 -2.39 -0.02 2.09 16 33 H 0.07 3.33 7.19 -2.38 -0.02 3.31 16 34 H 0.05 2.23 6.93 -2.39 -0.02 2.21 16 35 H 0.28 12.46 8.31 -92.71 -0.77 11.69 16 Total: -1.00 -65.08 318.19 1.94 -63.14 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.13 Total: 17.45 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 4.75 Total: -36.87 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -0.98 Total: -83.66 kcal Atomic # 8 Polarization: -120.85 SS G_CDS: -4.62 Total: -125.47 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 128.56 SS G_CDS: -0.30 Total: 128.27 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.68 kcal Total: -65.08 1.94 -63.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260783577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.558 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds