Wall clock time and date at job start Tue Mar 31 2020 12:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39028 * 119.99893 * 179.97438 * 11 10 9 13 13 C 1.39310 * 120.08730 * 359.73330 * 12 11 10 14 14 N 1.31944 * 119.89952 * 179.70514 * 13 12 11 15 15 C 1.32317 * 120.07671 * 0.58770 * 14 13 12 16 16 I 2.09500 * 119.91020 * 179.68640 * 15 14 13 17 17 C 1.38230 * 120.17565 * 359.66422 * 15 14 13 18 18 N 1.32240 * 120.10023 * 0.04256 * 17 15 14 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 21 21 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 24 24 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 25 25 H 1.07993 * 120.05257 * 359.97114 * 13 12 11 26 26 H 1.07999 * 119.95056 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2080 -6.1348 0.0013 13 6 3.6011 -6.1369 -0.0054 14 7 4.2571 -7.2816 -0.0001 15 6 3.5934 -8.4263 -0.0002 16 53 4.6403 -10.2409 -0.0017 17 6 2.2111 -8.4279 0.0012 18 7 1.5465 -7.2847 0.0018 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5564 0.8919 22 1 2.8714 -3.6047 -0.8890 23 1 2.8726 -3.6039 0.8910 24 1 0.5429 -4.9308 0.0020 25 1 4.1433 -5.2029 -0.0107 26 1 1.6730 -9.3643 0.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515624354.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:01 Heat of formation + Delta-G solvation = 34.073118 kcal Electronic energy + Delta-G solvation = -12500.081665 eV Core-core repulsion = 10050.977358 eV Total energy + Delta-G solvation = -2449.104307 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 318.988 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.12313 -37.91900 -35.57635 -34.88889 -33.09357 -31.38912 -28.68740 -26.71212 -25.76995 -23.80615 -22.75122 -19.17109 -18.75928 -17.97358 -16.95103 -16.53756 -16.47799 -15.65257 -15.48198 -15.40071 -14.26932 -13.50628 -13.28334 -13.05572 -12.81284 -12.69777 -12.48626 -12.27701 -11.63611 -11.52792 -11.37231 -11.07131 -10.86222 -10.57801 -10.20407 -8.92714 -8.24244 -6.34877 -0.20876 -0.13877 0.07370 1.42419 1.44089 1.56034 1.95628 2.42502 2.60418 3.11919 3.30027 3.41163 3.46307 4.01234 4.32050 4.43988 4.46818 4.81933 4.91667 5.36390 5.55351 5.57707 5.79051 6.10979 6.28749 6.33736 6.77341 6.83093 7.35333 8.88026 Molecular weight = 318.99amu Principal moments of inertia in cm(-1) A = 0.068813 B = 0.002672 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.800555 B =10476.678495 C =10863.031662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.018 3.982 10 C 0.139 3.861 11 N -0.697 5.697 12 C 0.368 3.632 13 C -0.011 4.011 14 N -0.386 5.386 15 C -0.044 4.044 16 I 0.035 6.965 17 C 0.152 3.848 18 N -0.521 5.521 19 H 0.264 0.736 20 H 0.003 0.997 21 H 0.003 0.997 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.408 0.592 25 H 0.183 0.817 26 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 -23.527 -0.015 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.089 0.911 9 C -0.019 4.019 10 C 0.016 3.984 11 N -0.324 5.324 12 C 0.126 3.874 13 C -0.184 4.184 14 N -0.100 5.100 15 C -0.322 4.322 16 I 0.177 6.823 17 C -0.013 4.013 18 N -0.245 5.245 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.244 0.756 25 H 0.200 0.800 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.055 -24.413 -0.011 26.403 hybrid contribution -1.056 2.203 0.004 2.443 sum 8.999 -22.210 -0.007 23.964 Atomic orbital electron populations 1.70084 1.07787 1.27867 1.51279 1.25921 0.95709 1.03354 0.94624 0.85385 0.79298 0.78765 0.77528 1.18197 1.20723 1.20738 1.21506 0.93967 0.91318 1.50979 0.91071 1.19137 0.94516 0.92145 0.96134 1.21618 0.95236 0.80077 1.01420 1.45075 1.09696 1.02028 1.75646 1.19700 0.90727 0.87337 0.89620 1.23385 0.90496 0.97909 1.06654 1.68081 1.39462 0.97642 1.04857 1.26568 0.94366 0.97583 1.13634 1.96694 1.75662 1.11047 1.98866 1.23751 0.90739 0.96901 0.89909 1.68158 1.39246 0.97640 1.19500 0.92725 0.97847 0.97847 0.91184 0.91192 0.75626 0.80041 0.78575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 13.29 21.45 0.28 -53.30 15 2 C 0.00 0.13 5.46 84.66 0.46 0.59 15 3 Si 0.97 41.80 29.54 68.60 2.03 43.83 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.54 -27.88 9.11 25.60 0.23 -27.65 15 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 15 9 C 0.02 0.85 5.09 29.85 0.15 1.01 15 10 C 0.14 4.94 4.84 86.38 0.42 5.36 15 11 N -0.70 -22.51 5.73 -344.70 -1.97 -24.48 15 12 C 0.37 11.26 7.67 133.02 1.02 12.28 15 13 C -0.01 -0.31 10.49 84.93 0.89 0.58 15 14 N -0.39 -11.06 10.45 -197.20 -2.06 -13.12 15 15 C -0.04 -1.09 7.14 84.62 0.60 -0.49 15 16 I 0.03 0.66 40.46 -18.82 -0.76 -0.10 15 17 C 0.15 3.68 10.92 84.63 0.92 4.60 15 18 N -0.52 -15.25 10.53 -192.59 -2.03 -17.28 15 19 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 20 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 21 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 22 H 0.07 2.36 7.93 -2.39 -0.02 2.34 15 23 H 0.07 2.36 7.95 -2.39 -0.02 2.34 15 24 H 0.41 13.23 8.60 -92.71 -0.80 12.43 15 25 H 0.18 4.77 6.73 -2.91 -0.02 4.75 15 26 H 0.20 3.40 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -58.74 263.64 0.60 -58.14 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.41 Total: 10.03 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.71 Total: -3.71 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -5.78 Total: -108.18 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 53 Polarization: 0.66 SS G_CDS: -0.76 Total: -0.10 kcal Total: -58.74 0.60 -58.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515624354.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.214 kcal (2) G-P(sol) polarization free energy of solvation -58.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds