Wall clock time and date at job start Tue Mar 31 2020 12:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47292 * 274.73549 * 3 2 1 5 5 H 1.48500 * 109.46888 * 34.73054 * 3 2 1 6 6 H 1.48499 * 109.47028 * 154.73250 * 3 2 1 7 7 C 1.39910 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00060 * 160.70950 * 7 2 1 9 9 C 1.41141 * 119.99551 * 340.69987 * 7 2 1 10 10 C 1.40881 * 120.15852 * 155.99881 * 9 7 2 11 11 C 1.36357 * 119.83136 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16556 * 359.97438 * 11 10 9 13 13 N 1.39133 * 119.83567 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00090 * 146.91641 * 13 12 11 15 15 O 1.21588 * 119.99895 * 354.64284 * 14 13 12 16 16 C 1.47563 * 119.99840 * 174.63833 * 14 13 12 17 17 C 1.39917 * 120.18267 * 269.99825 * 16 14 13 18 18 F 1.35099 * 120.10045 * 359.70849 * 17 16 14 19 19 C 1.38228 * 119.79261 * 179.72840 * 17 16 14 20 20 C 1.38289 * 120.15920 * 359.97438 * 19 17 16 21 21 C 1.38351 * 120.36559 * 0.02562 * 20 19 17 22 22 C 1.38066 * 120.20623 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 120.08085 * 180.02562 * 22 21 20 24 24 C 1.39512 * 120.32815 * 0.25918 * 12 11 10 25 25 C 1.36363 * 120.16340 * 359.47640 * 24 12 11 26 26 H 0.97001 * 119.99750 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.08049 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.91696 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00022 * 326.92238 * 13 12 11 30 30 H 1.07998 * 119.91927 * 179.97438 * 19 17 16 31 31 H 1.08000 * 119.82114 * 180.02562 * 20 19 17 32 32 H 1.07999 * 119.89574 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.91489 * 179.74913 * 24 12 11 34 34 H 1.08000 * 120.07929 * 180.25616 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3902 2.1042 -1.3953 5 1 1.4938 2.6217 0.7977 6 1 3.5868 1.4133 0.5976 7 6 2.0083 -1.2117 -0.0005 8 1 3.0428 -1.2378 -0.3095 9 6 1.3620 -2.3998 0.4029 10 6 1.8327 -3.6492 -0.0465 11 6 1.2029 -4.7928 0.3470 12 6 0.0954 -4.7277 1.1930 13 7 -0.5423 -5.8989 1.5899 14 6 -1.1043 -5.9792 2.8122 15 8 -0.9706 -5.0662 3.6040 16 6 -1.8820 -7.1752 3.1895 17 6 -3.2580 -7.2268 2.9412 18 9 -3.8813 -6.1785 2.3600 19 6 -3.9776 -8.3533 3.2929 20 6 -3.3406 -9.4270 3.8877 21 6 -1.9803 -9.3831 4.1362 22 6 -1.2469 -8.2654 3.7912 23 17 0.4599 -8.2141 4.1039 24 6 -0.3793 -3.4938 1.6383 25 6 0.2435 -2.3420 1.2574 26 1 -0.4850 0.8401 0.0004 27 1 2.6896 -3.7011 -0.7018 28 1 1.5623 -5.7514 0.0030 29 1 -0.5823 -6.6576 0.9868 30 1 -5.0399 -8.3951 3.1025 31 1 -3.9081 -10.3047 4.1598 32 1 -1.4906 -10.2258 4.6015 33 1 -1.2396 -3.4509 2.2898 34 1 -0.1227 -1.3878 1.6062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026383844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:36 Heat of formation + Delta-G solvation = -37.327700 kcal Electronic energy + Delta-G solvation = -22998.324724 eV Core-core repulsion = 19222.224451 eV Total energy + Delta-G solvation = -3776.100273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.15247 -40.13074 -38.77248 -37.13942 -36.70064 -34.49105 -33.02774 -31.58907 -30.83028 -29.49654 -28.91819 -25.44526 -23.89966 -23.10357 -21.55397 -21.10100 -19.80734 -18.23117 -17.47690 -17.30069 -17.00938 -16.44197 -15.81773 -15.52113 -15.20562 -15.02576 -14.30186 -14.08480 -13.91516 -13.64384 -13.43448 -12.98663 -12.71330 -12.44369 -12.04432 -11.93258 -11.86322 -11.65209 -11.38385 -11.23218 -11.14053 -11.07287 -10.67924 -10.04023 -9.69712 -9.56716 -9.26291 -9.08249 -9.06905 -8.93518 -7.52646 -7.02524 -6.75696 -4.29566 0.51191 0.64286 1.74601 2.43945 2.92999 2.97748 3.07763 3.10932 3.13409 3.30653 3.51783 3.87712 3.92964 4.34880 4.57568 4.64601 4.69148 4.79079 5.06380 5.44837 5.57714 5.60692 5.72114 5.76639 6.15166 6.27404 6.38371 6.75312 6.95700 7.03461 7.13047 7.27469 7.57600 7.64704 7.92099 8.04949 8.16706 8.28883 8.59986 8.66849 8.87487 8.98980 10.15759 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.003186 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.460364 B = 8786.753753 C = 9434.173045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.108 3.892 10 C -0.217 4.217 11 C -0.098 4.098 12 C -0.011 4.011 13 N -0.632 5.632 14 C 0.546 3.454 15 O -0.507 6.507 16 C -0.146 4.146 17 C 0.145 3.855 18 F -0.120 7.120 19 C -0.153 4.153 20 C -0.068 4.068 21 C -0.125 4.125 22 C 0.017 3.983 23 Cl -0.038 7.038 24 C -0.083 4.083 25 C -0.157 4.157 26 H 0.282 0.718 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.395 0.605 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.101 0.899 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.718 -17.980 5.369 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.237 4.237 11 C -0.118 4.118 12 C -0.103 4.103 13 N -0.274 5.274 14 C 0.330 3.670 15 O -0.383 6.383 16 C -0.151 4.151 17 C 0.125 3.875 18 F -0.098 7.098 19 C -0.171 4.171 20 C -0.086 4.086 21 C -0.143 4.143 22 C -0.011 4.011 23 Cl -0.008 7.008 24 C -0.103 4.103 25 C -0.177 4.177 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.229 0.771 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.710 -17.093 5.924 19.295 hybrid contribution 0.259 0.534 -0.419 0.726 sum -6.451 -16.560 5.506 18.605 Atomic orbital electron populations 1.69860 1.07660 1.29399 1.34144 1.25951 0.94710 1.01451 0.92213 0.86319 0.80863 0.80666 0.79028 1.19562 1.19971 1.18349 1.19559 0.98705 0.91498 1.38800 0.90291 1.17662 0.91197 0.92067 0.88563 1.20516 1.03919 0.92435 1.06797 1.20007 0.94589 0.97236 1.00007 1.17114 0.99379 0.84283 1.09546 1.42853 1.54308 1.15856 1.14369 1.17702 0.80789 0.85850 0.82642 1.90838 1.59250 1.38197 1.49984 1.20059 0.93424 0.96473 1.05109 1.17528 0.88843 0.85404 0.95753 1.91604 1.81846 1.55226 1.81107 1.21218 1.01444 0.92588 1.01895 1.21077 0.93625 0.98067 0.95835 1.21083 0.94171 0.97368 1.01717 1.20752 0.86875 0.94072 0.99406 1.98436 1.10259 1.98338 1.93787 1.20409 0.99102 0.91282 0.99468 1.20947 0.99449 0.96774 1.00518 0.90743 0.88555 0.89122 0.77147 0.83479 0.83610 0.83686 0.88100 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.56 11.01 55.55 0.61 -19.95 16 2 C 0.08 1.91 5.11 -17.33 -0.09 1.82 16 3 Si 0.91 18.78 29.60 -169.99 -5.03 13.75 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.18 9.03 -37.86 -0.34 -12.52 16 8 H 0.08 2.01 7.92 -52.49 -0.42 1.59 16 9 C 0.11 2.92 5.58 -106.80 -0.60 2.32 16 10 C -0.22 -5.31 9.74 -39.26 -0.38 -5.69 16 11 C -0.10 -2.20 9.89 -39.78 -0.39 -2.59 16 12 C -0.01 -0.26 6.29 -83.60 -0.53 -0.79 16 13 N -0.63 -11.98 5.30 -10.67 -0.06 -12.04 16 14 C 0.55 10.50 5.67 -12.46 -0.07 10.43 16 15 O -0.51 -11.90 14.76 5.29 0.08 -11.82 16 16 C -0.15 -2.16 5.64 -104.89 -0.59 -2.75 16 17 C 0.15 1.90 7.29 -38.96 -0.28 1.62 16 18 F -0.12 -1.83 16.83 2.25 0.04 -1.79 16 19 C -0.15 -1.35 10.01 -39.57 -0.40 -1.74 16 20 C -0.07 -0.47 10.03 -39.52 -0.40 -0.87 16 21 C -0.12 -1.05 9.81 -39.60 -0.39 -1.44 16 22 C 0.02 0.20 6.35 -39.07 -0.25 -0.04 16 23 Cl -0.04 -0.50 28.04 -51.86 -1.45 -1.95 16 24 C -0.08 -2.12 8.57 -39.78 -0.34 -2.47 16 25 C -0.16 -4.28 8.65 -39.26 -0.34 -4.62 16 26 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 27 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.40 6.10 8.80 -40.82 -0.36 5.74 16 30 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.10 2.62 6.39 -52.49 -0.34 2.29 16 34 H 0.12 3.36 6.17 -52.49 -0.32 3.04 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -31.40 322.38 -9.02 -40.43 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.68 Total: 7.85 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -5.38 Total: -19.33 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.55 Total: -31.99 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.45 Total: -1.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.40 -9.02 -40.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026383844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.098 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds