Wall clock time and date at job start Tue Mar 31 2020 12:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47292 * 274.73549 * 3 2 1 5 5 H 1.48500 * 109.46888 * 34.73054 * 3 2 1 6 6 H 1.48499 * 109.47028 * 154.73250 * 3 2 1 7 7 C 1.39910 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00060 * 160.70950 * 7 2 1 9 9 C 1.41141 * 119.99551 * 340.69987 * 7 2 1 10 10 C 1.40881 * 120.15852 * 155.99881 * 9 7 2 11 11 C 1.36357 * 119.83136 * 180.02562 * 10 9 7 12 12 C 1.39512 * 120.16556 * 359.97438 * 11 10 9 13 13 N 1.39133 * 119.83567 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00090 * 146.91641 * 13 12 11 15 15 O 1.21588 * 119.99895 * 354.64284 * 14 13 12 16 16 C 1.47563 * 119.99840 * 174.63833 * 14 13 12 17 17 C 1.39917 * 120.18267 * 269.99825 * 16 14 13 18 18 F 1.35099 * 120.10045 * 359.70849 * 17 16 14 19 19 C 1.38228 * 119.79261 * 179.72840 * 17 16 14 20 20 C 1.38289 * 120.15920 * 359.97438 * 19 17 16 21 21 C 1.38351 * 120.36559 * 0.02562 * 20 19 17 22 22 C 1.38066 * 120.20623 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 120.08085 * 180.02562 * 22 21 20 24 24 C 1.39512 * 120.32815 * 0.25918 * 12 11 10 25 25 C 1.36363 * 120.16340 * 359.47640 * 24 12 11 26 26 H 0.97001 * 119.99750 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.08049 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.91696 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00022 * 326.92238 * 13 12 11 30 30 H 1.07998 * 119.91927 * 179.97438 * 19 17 16 31 31 H 1.08000 * 119.82114 * 180.02562 * 20 19 17 32 32 H 1.07999 * 119.89574 * 179.97438 * 21 20 19 33 33 H 1.07998 * 119.91489 * 179.74913 * 24 12 11 34 34 H 1.08000 * 120.07929 * 180.25616 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3902 2.1042 -1.3953 5 1 1.4938 2.6217 0.7977 6 1 3.5868 1.4133 0.5976 7 6 2.0083 -1.2117 -0.0005 8 1 3.0428 -1.2378 -0.3095 9 6 1.3620 -2.3998 0.4029 10 6 1.8327 -3.6492 -0.0465 11 6 1.2029 -4.7928 0.3470 12 6 0.0954 -4.7277 1.1930 13 7 -0.5423 -5.8989 1.5899 14 6 -1.1043 -5.9792 2.8122 15 8 -0.9706 -5.0662 3.6040 16 6 -1.8820 -7.1752 3.1895 17 6 -3.2580 -7.2268 2.9412 18 9 -3.8813 -6.1785 2.3600 19 6 -3.9776 -8.3533 3.2929 20 6 -3.3406 -9.4270 3.8877 21 6 -1.9803 -9.3831 4.1362 22 6 -1.2469 -8.2654 3.7912 23 17 0.4599 -8.2141 4.1039 24 6 -0.3793 -3.4938 1.6383 25 6 0.2435 -2.3420 1.2574 26 1 -0.4850 0.8401 0.0004 27 1 2.6896 -3.7011 -0.7018 28 1 1.5623 -5.7514 0.0030 29 1 -0.5823 -6.6576 0.9868 30 1 -5.0399 -8.3951 3.1025 31 1 -3.9081 -10.3047 4.1598 32 1 -1.4906 -10.2258 4.6015 33 1 -1.2396 -3.4509 2.2898 34 1 -0.1227 -1.3878 1.6062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026383844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:35 Heat of formation + Delta-G solvation = -55.740392 kcal Electronic energy + Delta-G solvation = -22999.123158 eV Core-core repulsion = 19222.224451 eV Total energy + Delta-G solvation = -3776.898707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.20041 -41.53453 -39.95318 -38.90245 -37.62837 -36.29797 -34.83706 -32.65118 -31.62819 -31.46168 -30.73622 -27.14386 -25.17178 -23.94231 -23.34484 -22.82803 -21.40306 -19.48394 -19.25866 -18.58604 -18.07095 -17.95535 -17.15657 -16.84989 -16.47910 -15.96504 -15.91923 -15.72086 -15.26440 -14.93556 -14.60727 -14.48091 -14.33892 -13.99215 -13.73145 -13.33576 -13.21598 -12.98476 -12.79155 -12.72890 -12.51569 -12.42785 -12.20889 -11.81566 -11.56333 -11.30552 -10.96328 -10.75423 -10.18341 -9.90241 -9.51482 -8.94817 -8.65690 -6.30284 -0.34194 -0.14820 0.68562 0.83926 1.09770 1.33040 1.38155 1.52309 1.62884 2.08559 2.18829 2.28073 2.69955 2.97908 3.45240 3.68822 3.72262 3.80767 4.09188 4.25405 4.37461 4.39941 4.62323 4.83993 4.88937 4.98327 5.04560 5.09185 5.11552 5.23369 5.35775 5.55976 5.61709 5.78040 5.99682 6.05289 6.27042 6.51823 6.62668 6.87953 6.93715 7.17574 8.28388 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.003186 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.460364 B = 8786.753753 C = 9434.173045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.078 3.922 10 C -0.224 4.224 11 C -0.092 4.092 12 C -0.002 4.002 13 N -0.627 5.627 14 C 0.549 3.451 15 O -0.560 6.560 16 C -0.176 4.176 17 C 0.117 3.883 18 F -0.144 7.144 19 C -0.137 4.137 20 C -0.040 4.040 21 C -0.109 4.109 22 C 0.005 3.995 23 Cl -0.056 7.056 24 C -0.097 4.097 25 C -0.182 4.182 26 H 0.289 0.711 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.414 0.586 30 H 0.179 0.821 31 H 0.200 0.800 32 H 0.179 0.821 33 H 0.086 0.914 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 -21.273 5.575 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.075 3.925 10 C -0.243 4.243 11 C -0.112 4.112 12 C -0.095 4.095 13 N -0.270 5.270 14 C 0.336 3.664 15 O -0.439 6.439 16 C -0.181 4.181 17 C 0.097 3.903 18 F -0.122 7.122 19 C -0.155 4.155 20 C -0.058 4.058 21 C -0.127 4.127 22 C -0.023 4.023 23 Cl -0.027 7.027 24 C -0.118 4.118 25 C -0.202 4.202 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.251 0.749 30 H 0.196 0.804 31 H 0.217 0.783 32 H 0.197 0.803 33 H 0.104 0.896 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.339 -20.444 6.109 22.564 hybrid contribution 0.319 1.312 -0.418 1.413 sum -7.019 -19.132 5.690 21.159 Atomic orbital electron populations 1.69925 1.09300 1.30746 1.34702 1.26878 0.95440 1.04920 0.91110 0.85166 0.79177 0.75659 0.79567 1.18196 1.19369 1.18059 1.19845 0.99151 0.92528 1.40460 0.89814 1.17995 0.91608 0.93681 0.89216 1.20807 1.04499 0.92218 1.06818 1.20361 0.93524 0.98527 0.98785 1.17199 0.99208 0.84787 1.08349 1.42797 1.53946 1.15167 1.15107 1.18411 0.79671 0.86594 0.81696 1.90800 1.60913 1.40724 1.51423 1.19743 0.93965 0.95727 1.08626 1.17955 0.88495 0.86440 0.97386 1.91543 1.82109 1.56714 1.81851 1.21657 1.02749 0.91006 1.00101 1.21725 0.92944 0.98563 0.92519 1.21568 0.94778 0.96503 0.99888 1.20939 0.86270 0.94759 1.00314 1.98428 1.11897 1.98419 1.93947 1.20408 0.99021 0.92435 0.99887 1.20830 1.00864 0.96372 1.02124 0.90059 0.86790 0.84830 0.74899 0.80377 0.78297 0.80336 0.89595 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.95 11.01 21.82 0.24 -44.71 16 2 C 0.03 1.67 5.11 85.24 0.44 2.10 16 3 Si 0.98 39.27 29.60 68.60 2.03 41.30 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.49 -27.14 9.03 23.39 0.21 -26.93 16 8 H 0.08 4.37 7.92 -2.91 -0.02 4.35 16 9 C 0.08 4.38 5.58 -21.28 -0.12 4.27 16 10 C -0.22 -11.07 9.74 22.48 0.22 -10.85 16 11 C -0.09 -4.08 9.89 22.14 0.22 -3.86 16 12 C 0.00 -0.11 6.29 38.60 0.24 0.13 16 13 N -0.63 -24.09 5.30 -305.94 -1.62 -25.71 16 14 C 0.55 21.80 5.67 86.70 0.49 22.30 16 15 O -0.56 -27.79 14.76 -3.99 -0.06 -27.85 16 16 C -0.18 -5.14 5.64 -20.04 -0.11 -5.25 16 17 C 0.12 2.95 7.29 22.67 0.17 3.11 16 18 F -0.14 -4.50 16.83 44.97 0.76 -3.74 16 19 C -0.14 -1.86 10.01 22.28 0.22 -1.63 16 20 C -0.04 -0.31 10.03 22.31 0.22 -0.09 16 21 C -0.11 -1.34 9.81 22.26 0.22 -1.13 16 22 C 0.00 0.11 6.35 22.60 0.14 0.25 16 23 Cl -0.06 -1.43 28.04 -2.72 -0.08 -1.51 16 24 C -0.10 -5.32 8.57 22.14 0.19 -5.13 16 25 C -0.18 -10.58 8.65 22.48 0.19 -10.39 16 26 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 27 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 28 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.41 12.55 8.80 -92.71 -0.82 11.74 16 30 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 32 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.09 4.85 6.39 -2.91 -0.02 4.83 16 34 H 0.10 5.93 6.17 -2.91 -0.02 5.91 16 Total: -1.00 -75.77 322.38 4.58 -71.20 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.36 Total: 24.12 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 2.95 Total: -33.10 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.38 Total: -70.42 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.76 Total: -3.74 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -75.77 4.58 -71.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026383844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.458 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds