Wall clock time and date at job start Tue Mar 31 2020 12:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99897 * 2 1 4 4 H 1.07997 * 120.00390 * 321.91982 * 3 2 1 5 5 C 1.38814 * 120.00018 * 141.91643 * 3 2 1 6 6 N 1.31624 * 120.00018 * 157.19493 * 5 3 2 7 7 Si 1.86795 * 120.00183 * 337.19865 * 5 3 2 8 8 H 1.48499 * 109.47421 * 95.66842 * 7 5 3 9 9 H 1.48502 * 109.47269 * 215.67427 * 7 5 3 10 10 H 1.48504 * 109.46888 * 335.67082 * 7 5 3 11 11 C 1.46498 * 120.00204 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47239 * 89.99972 * 11 2 1 13 13 H 1.08994 * 109.46955 * 304.99930 * 12 11 2 14 14 O 1.42898 * 109.47084 * 64.99876 * 12 11 2 15 15 C 1.52998 * 109.47018 * 184.99982 * 12 11 2 16 16 O 1.42905 * 109.46957 * 174.99939 * 15 12 11 17 17 C 1.35930 * 116.99905 * 180.02562 * 16 15 12 18 18 C 1.38692 * 120.04856 * 359.72149 * 17 16 15 19 19 C 1.38263 * 119.93668 * 179.77024 * 18 17 16 20 20 Cl 1.73606 * 119.97186 * 180.25289 * 19 18 17 21 21 C 1.38395 * 120.05532 * 0.50981 * 19 18 17 22 22 C 1.38230 * 120.10105 * 359.74285 * 21 19 18 23 23 C 1.38252 * 120.05658 * 0.02562 * 22 21 19 24 24 Cl 1.73609 * 120.02597 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47085 * 265.68115 * 1 2 3 26 26 H 1.08993 * 109.46880 * 25.68647 * 1 2 3 27 27 H 1.09006 * 109.46793 * 145.68597 * 1 2 3 28 28 H 0.97002 * 119.99715 * 180.02562 * 6 5 3 29 29 H 1.08997 * 109.47575 * 329.99688 * 11 2 1 30 30 H 1.09002 * 109.46877 * 209.99846 * 11 2 1 31 31 H 0.96700 * 114.00076 * 60.00768 * 14 12 11 32 32 H 1.09003 * 109.47464 * 295.00061 * 15 12 11 33 33 H 1.09006 * 109.47432 * 54.99872 * 15 12 11 34 34 H 1.07997 * 120.03161 * 359.97438 * 18 17 16 35 35 H 1.07995 * 119.95088 * 179.72469 * 21 19 18 36 36 H 1.08006 * 119.97234 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7821 2.0217 -0.5768 5 6 3.3162 1.3139 0.7415 6 7 4.2021 2.2332 0.4212 7 14 3.6287 0.1815 2.1938 8 1 4.4687 -0.9628 1.7575 9 1 4.3324 0.9323 3.2645 10 1 2.3334 -0.3254 2.7140 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 1 1.5063 -1.7541 -1.9823 14 8 3.3209 -0.7715 -2.0817 15 6 3.1062 -3.0931 -1.4457 16 8 3.2381 -3.5552 -2.7915 17 6 3.8038 -4.7781 -2.9714 18 6 4.2283 -5.5149 -1.8757 19 6 4.7990 -6.7605 -2.0610 20 17 5.3247 -7.6863 -0.6898 21 6 4.9565 -7.2675 -3.3391 22 6 4.5389 -6.5326 -4.4328 23 6 3.9633 -5.2887 -4.2523 24 17 3.4397 -4.3660 -5.6266 25 1 -0.3633 -0.0774 1.0247 26 1 -0.3633 0.9261 -0.4454 27 1 -0.3633 -0.8489 -0.5794 28 1 5.0174 2.3223 0.9392 29 1 1.6086 -2.0286 0.5129 30 1 3.1500 -1.1385 0.5133 31 1 4.1837 -0.6803 -1.6546 32 1 4.0920 -3.0300 -0.9849 33 1 2.4854 -3.7893 -0.8816 34 1 4.1101 -5.1174 -0.8785 35 1 5.4066 -8.2387 -3.4822 36 1 4.6632 -6.9301 -5.4293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:46 Heat of formation + Delta-G solvation = -65.525387 kcal Electronic energy + Delta-G solvation = -22220.530722 eV Core-core repulsion = 18564.235161 eV Total energy + Delta-G solvation = -3656.295561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41696 -39.46051 -38.36974 -37.72253 -37.11546 -36.40677 -33.72864 -32.04828 -31.82445 -30.67117 -28.23433 -27.35852 -24.40006 -23.65905 -22.93485 -22.44852 -19.71211 -18.90597 -17.86818 -17.77025 -17.38036 -17.04658 -16.66192 -16.29379 -15.91177 -15.60590 -15.40469 -15.12896 -14.69440 -14.38047 -14.28335 -14.11936 -13.70347 -13.46905 -13.33826 -13.16198 -12.83411 -12.64083 -12.36693 -12.30721 -12.06969 -12.00701 -11.94324 -11.84381 -11.73774 -11.52082 -10.98572 -10.61141 -9.99604 -9.32282 -8.73578 -8.14047 -5.52596 -0.20628 0.10245 0.89206 1.15690 1.26471 1.43872 1.53577 1.92109 2.32890 2.42719 3.05530 3.37981 3.54964 3.59945 3.73705 3.86289 3.91816 4.00982 4.15950 4.26159 4.32155 4.39037 4.48864 4.66928 4.67730 4.70943 4.95074 4.99464 5.01648 5.09975 5.13905 5.36636 5.96386 6.11332 6.21236 6.85467 7.01741 7.63810 8.04771 9.05967 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.003854 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.640967 B = 7263.568658 C = 8460.807663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.617 5.617 3 C -0.249 4.249 4 H 0.029 0.971 5 C -0.015 4.015 6 N -0.945 5.945 7 Si 0.937 3.063 8 H -0.263 1.263 9 H -0.312 1.312 10 H -0.261 1.261 11 C 0.107 3.893 12 C 0.098 3.902 13 H 0.094 0.906 14 O -0.557 6.557 15 C 0.028 3.972 16 O -0.304 6.304 17 C 0.137 3.863 18 C -0.201 4.201 19 C 0.003 3.997 20 Cl -0.054 7.054 21 C -0.133 4.133 22 C -0.052 4.052 23 C -0.086 4.086 24 Cl -0.060 7.060 25 H 0.022 0.978 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.371 0.629 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -25.107 -6.018 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.340 5.340 3 C -0.379 4.379 4 H 0.047 0.953 5 C -0.211 4.211 6 N -0.589 5.589 7 Si 0.766 3.234 8 H -0.189 1.189 9 H -0.241 1.241 10 H -0.185 1.185 11 C -0.019 4.019 12 C 0.036 3.964 13 H 0.112 0.888 14 O -0.361 6.361 15 C -0.048 4.048 16 O -0.217 6.217 17 C 0.090 3.910 18 C -0.221 4.221 19 C -0.024 4.024 20 Cl -0.025 7.025 21 C -0.152 4.152 22 C -0.071 4.071 23 C -0.113 4.113 24 Cl -0.031 7.031 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.482 -24.798 -6.504 25.642 hybrid contribution 0.827 0.258 1.287 1.552 sum 1.309 -24.541 -5.217 25.123 Atomic orbital electron populations 1.21221 0.82201 1.00268 0.98667 1.44003 1.02247 1.01309 1.86483 1.18522 1.06203 0.91063 1.22074 0.95301 1.25968 0.96540 0.98579 1.00002 1.70042 1.09293 1.38954 1.40657 0.85967 0.78215 0.78625 0.80634 1.18934 1.24064 1.18496 1.21904 0.97146 0.88604 0.94219 1.22647 0.93486 0.84342 0.95888 0.88804 1.86595 1.29408 1.63876 1.56230 1.23852 1.02260 0.97319 0.81358 1.86287 1.75153 1.29882 1.30401 1.18845 0.93776 0.85759 0.92651 1.21202 1.05918 0.95655 0.99282 1.20867 0.99201 0.92533 0.89782 1.98397 1.88681 1.72470 1.42974 1.21232 1.02647 1.02396 0.88898 1.21189 0.94300 0.90127 1.01473 1.20592 1.08275 0.96091 0.86377 1.98387 1.89334 1.73822 1.41528 0.96022 0.94498 0.92251 0.92912 0.89588 0.93618 0.78244 0.90894 0.88380 0.82996 0.81067 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.52 10.70 127.77 1.37 5.89 16 2 N -0.62 -27.96 2.45 -726.94 -1.78 -29.74 16 3 C -0.25 -13.92 9.38 84.03 0.79 -13.13 16 4 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 5 C -0.01 -0.82 5.29 84.86 0.45 -0.37 16 6 N -0.95 -57.68 13.97 21.65 0.30 -57.38 16 7 Si 0.94 43.28 25.10 68.60 1.72 45.00 16 8 H -0.26 -10.92 6.68 99.48 0.66 -10.26 16 9 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 C 0.11 4.01 4.21 86.38 0.36 4.38 16 12 C 0.10 3.43 3.49 30.59 0.11 3.54 16 13 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 14 O -0.56 -23.95 12.78 -144.34 -1.84 -25.79 16 15 C 0.03 0.75 4.37 71.98 0.31 1.06 16 16 O -0.30 -8.96 9.56 -88.13 -0.84 -9.81 16 17 C 0.14 3.41 6.68 22.52 0.15 3.56 16 18 C -0.20 -4.22 8.82 22.38 0.20 -4.02 16 19 C 0.00 0.06 6.32 22.31 0.14 0.20 16 20 Cl -0.05 -0.89 28.95 -2.72 -0.08 -0.97 16 21 C -0.13 -1.88 9.83 22.31 0.22 -1.66 16 22 C -0.05 -0.81 9.82 22.27 0.22 -0.59 16 23 C -0.09 -1.92 6.33 22.41 0.14 -1.78 16 24 Cl -0.06 -1.46 28.50 -2.72 -0.08 -1.54 16 25 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.04 1.43 8.00 -2.39 -0.02 1.41 16 27 H 0.06 1.83 8.10 -2.38 -0.02 1.81 16 28 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.09 2.59 8.07 -2.39 -0.02 2.57 16 30 H 0.05 1.85 3.38 -2.39 -0.01 1.84 16 31 H 0.37 15.19 9.05 -74.06 -0.67 14.52 16 32 H 0.07 1.85 7.65 -2.39 -0.02 1.84 16 33 H 0.10 2.05 7.67 -2.38 -0.02 2.03 16 34 H 0.15 2.93 6.30 -2.91 -0.02 2.91 16 35 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -68.56 334.45 2.27 -66.29 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.41 Total: 16.88 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 4.46 Total: -2.94 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -1.48 Total: -87.12 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.69 Total: -35.60 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.72 Total: 45.00 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.16 Total: -2.51 kcal Total: -68.56 2.27 -66.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.764 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds