Wall clock time and date at job start Tue Mar 31 2020 12:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.50695 * 109.46947 * 293.95856 * 3 2 1 5 5 H 1.08002 * 120.00327 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99996 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99728 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00211 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47095 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47229 * 119.99912 * 8 6 4 11 11 H 1.48497 * 109.47331 * 239.99851 * 8 6 4 12 12 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 13 13 C 1.53000 * 109.46769 * 66.04241 * 12 2 1 14 14 S 1.81404 * 109.46946 * 180.02562 * 13 12 2 15 15 C 1.76192 * 102.99967 * 180.02562 * 14 13 12 16 16 C 1.38929 * 120.07997 * 359.72325 * 15 14 13 17 17 C 1.38204 * 119.92460 * 179.77185 * 16 15 14 18 18 Cl 1.73601 * 119.96829 * 180.27360 * 17 16 15 19 19 C 1.38428 * 120.07179 * 0.50708 * 17 16 15 20 20 C 1.38274 * 120.14977 * 359.74400 * 19 17 16 21 21 C 1.38186 * 120.08457 * 0.02562 * 20 19 17 22 22 Cl 1.73599 * 120.04160 * 179.97438 * 21 20 19 23 23 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 24 24 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 25 25 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95458 * 3 2 1 27 27 H 1.09000 * 109.47257 * 173.95495 * 3 2 1 28 28 H 0.96996 * 120.00250 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46874 * 306.04522 * 12 2 1 30 30 H 1.08992 * 109.47407 * 186.04539 * 12 2 1 31 31 H 1.09002 * 109.47398 * 300.00295 * 13 12 2 32 32 H 1.09001 * 109.47194 * 60.00475 * 13 12 2 33 33 H 1.08006 * 120.03719 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.92406 * 179.72692 * 19 17 16 35 35 H 1.08003 * 119.95439 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0277 3.3492 -1.5289 7 7 2.7130 4.0016 -0.6153 8 14 1.5839 4.1866 -3.1385 9 1 0.8154 3.2444 -3.9912 10 1 0.7569 5.3882 -2.8599 11 1 2.8257 4.5931 -3.8439 12 6 1.9955 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 16 2.2809 -3.1884 2.3754 15 6 1.7729 -4.8361 2.0128 16 6 1.0454 -5.1026 0.8596 17 6 0.6526 -6.3969 0.5759 18 17 -0.2504 -6.7323 -0.8683 19 6 0.9742 -7.4256 1.4447 20 6 1.6937 -7.1630 2.5959 21 6 2.0938 -5.8719 2.8834 22 17 2.9964 -5.5433 4.3294 23 1 -0.3633 0.4513 0.9234 24 1 -0.3634 0.5741 -0.8524 25 1 -0.3633 -1.0251 -0.0708 26 1 1.5612 1.9274 0.8310 27 1 3.0798 1.3444 0.1082 28 1 2.9876 4.9177 -0.7773 29 1 1.5612 -0.3872 2.0628 30 1 3.0797 -0.6611 1.1756 31 1 0.5472 -2.3475 0.9322 32 1 2.0658 -2.6214 0.0451 33 1 0.7906 -4.2998 0.1835 34 1 0.6623 -8.4355 1.2229 35 1 1.9426 -7.9679 3.2717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:00 Heat of formation + Delta-G solvation = 10.232884 kcal Electronic energy + Delta-G solvation = -18829.921501 eV Core-core repulsion = 15619.663936 eV Total energy + Delta-G solvation = -3210.257565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61773 -37.09970 -36.95349 -36.49685 -32.85058 -31.88965 -30.88355 -30.41273 -27.11650 -25.57087 -23.61670 -23.32355 -22.10516 -20.24249 -18.33148 -16.85159 -16.40840 -16.27216 -15.71785 -15.26405 -15.00217 -14.55159 -14.40697 -14.34167 -13.48642 -13.36865 -13.23813 -12.77975 -12.55321 -12.19370 -11.99702 -11.85680 -11.41739 -11.35696 -11.30728 -11.24279 -10.96605 -10.90334 -10.67032 -10.53511 -10.23199 -10.11933 -9.90363 -9.26626 -9.08619 -8.48765 -7.65207 -7.39398 -6.07337 -4.09077 0.50104 0.65883 1.18621 1.62196 1.83907 2.32748 2.97009 3.28430 3.36032 3.40539 4.23954 4.38790 4.55373 4.75132 4.82124 4.88305 4.97292 5.19533 5.21468 5.29708 5.33266 5.59540 5.63092 5.70240 5.94742 6.01006 6.04687 6.16226 6.26288 6.65205 7.18442 7.25006 7.72223 7.97987 8.08625 8.44571 8.98309 9.55345 11.03633 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002826 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.246625 B = 9904.934929 C =11396.639735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.536 5.536 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.071 3.929 13 C -0.112 4.112 14 S -0.069 6.069 15 C -0.064 4.064 16 C -0.117 4.117 17 C -0.010 4.010 18 Cl -0.058 7.058 19 C -0.113 4.113 20 C -0.079 4.079 21 C -0.026 4.026 22 Cl -0.046 7.046 23 H 0.014 0.986 24 H 0.078 0.922 25 H 0.044 0.956 26 H -0.007 1.007 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -24.249 7.138 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.261 5.261 3 C 0.068 3.932 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.059 4.059 13 C -0.260 4.260 14 S 0.178 5.822 15 C -0.179 4.179 16 C -0.143 4.143 17 C -0.039 4.039 18 Cl -0.029 7.029 19 C -0.135 4.135 20 C -0.100 4.100 21 C -0.060 4.060 22 Cl -0.016 7.016 23 H 0.032 0.968 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.011 0.989 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.540 -23.686 7.671 25.027 hybrid contribution -1.182 0.434 -1.184 1.729 sum -3.722 -23.252 6.487 24.425 Atomic orbital electron populations 1.22295 0.88809 0.99484 1.00978 1.62150 1.07091 1.18129 1.38768 1.19770 0.95527 0.80979 0.96917 1.21172 1.34986 0.96948 1.01610 0.91727 1.24998 0.95234 0.97339 0.97056 1.69966 1.38250 1.11458 1.34036 0.86430 0.78190 0.79307 0.83432 1.19635 1.21091 1.20952 1.21683 1.01131 0.89220 0.93839 1.23978 1.04080 0.99409 0.98569 1.85874 1.69015 0.95129 1.32150 1.21761 1.01017 0.98496 0.96608 1.21136 0.99606 0.96556 0.96954 1.20874 0.98258 0.94386 0.90340 1.98400 1.72940 1.95442 1.36137 1.20992 0.99774 0.99144 0.93622 1.20931 0.97161 0.94750 0.97108 1.20471 1.00973 0.93673 0.90839 1.98394 1.72714 1.95423 1.35107 0.96764 0.90359 0.93722 0.98881 0.95020 0.92896 0.94747 0.90226 0.89245 0.88311 0.83554 0.83874 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.14 60.07 0.55 1.16 16 2 N -0.54 -11.12 4.75 -244.36 -1.16 -12.28 16 3 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 4 C -0.51 -14.04 8.46 -34.44 -0.29 -14.33 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 7 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.07 1.22 4.97 -3.82 -0.02 1.20 16 13 C -0.11 -1.53 4.26 37.16 0.16 -1.37 16 14 S -0.07 -0.88 20.83 -107.50 -2.24 -3.12 16 15 C -0.06 -0.74 6.11 -39.02 -0.24 -0.98 16 16 C -0.12 -1.28 9.14 -39.34 -0.36 -1.64 16 17 C -0.01 -0.10 6.32 -39.52 -0.25 -0.35 16 18 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 19 C -0.11 -0.90 9.83 -39.50 -0.39 -1.29 16 20 C -0.08 -0.65 9.82 -39.59 -0.39 -1.03 16 21 C -0.03 -0.27 6.34 -39.30 -0.25 -0.52 16 22 Cl -0.05 -0.47 27.83 -51.86 -1.44 -1.92 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.08 1.57 6.76 -51.93 -0.35 1.22 16 25 H 0.04 0.69 6.47 -51.93 -0.34 0.35 16 26 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 27 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 31 H 0.09 1.15 6.15 -51.92 -0.32 0.84 16 32 H 0.10 1.35 7.76 -51.92 -0.40 0.95 16 33 H 0.15 1.58 5.88 -52.48 -0.31 1.27 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -29.10 335.88 -11.33 -40.42 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.16 Total: -4.01 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.60 Total: -12.79 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.43 Total: -37.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.24 Total: -3.12 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.94 Total: -3.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.10 -11.33 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.657 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds