Wall clock time and date at job start Tue Mar 31 2020 12:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.50695 * 109.46947 * 293.95856 * 3 2 1 5 5 H 1.08002 * 120.00327 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99996 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99728 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00211 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47095 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47229 * 119.99912 * 8 6 4 11 11 H 1.48497 * 109.47331 * 239.99851 * 8 6 4 12 12 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 13 13 C 1.53000 * 109.46769 * 66.04241 * 12 2 1 14 14 S 1.81404 * 109.46946 * 180.02562 * 13 12 2 15 15 C 1.76192 * 102.99967 * 180.02562 * 14 13 12 16 16 C 1.38929 * 120.07997 * 359.72325 * 15 14 13 17 17 C 1.38204 * 119.92460 * 179.77185 * 16 15 14 18 18 Cl 1.73601 * 119.96829 * 180.27360 * 17 16 15 19 19 C 1.38428 * 120.07179 * 0.50708 * 17 16 15 20 20 C 1.38274 * 120.14977 * 359.74400 * 19 17 16 21 21 C 1.38186 * 120.08457 * 0.02562 * 20 19 17 22 22 Cl 1.73599 * 120.04160 * 179.97438 * 21 20 19 23 23 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 24 24 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 25 25 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 26 26 H 1.09006 * 109.46871 * 53.95458 * 3 2 1 27 27 H 1.09000 * 109.47257 * 173.95495 * 3 2 1 28 28 H 0.96996 * 120.00250 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46874 * 306.04522 * 12 2 1 30 30 H 1.08992 * 109.47407 * 186.04539 * 12 2 1 31 31 H 1.09002 * 109.47398 * 300.00295 * 13 12 2 32 32 H 1.09001 * 109.47194 * 60.00475 * 13 12 2 33 33 H 1.08006 * 120.03719 * 0.02562 * 16 15 14 34 34 H 1.07999 * 119.92406 * 179.72692 * 19 17 16 35 35 H 1.08003 * 119.95439 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0277 3.3492 -1.5289 7 7 2.7130 4.0016 -0.6153 8 14 1.5839 4.1866 -3.1385 9 1 0.8154 3.2444 -3.9912 10 1 0.7569 5.3882 -2.8599 11 1 2.8257 4.5931 -3.8439 12 6 1.9955 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9703 14 16 2.2809 -3.1884 2.3754 15 6 1.7729 -4.8361 2.0128 16 6 1.0454 -5.1026 0.8596 17 6 0.6526 -6.3969 0.5759 18 17 -0.2504 -6.7323 -0.8683 19 6 0.9742 -7.4256 1.4447 20 6 1.6937 -7.1630 2.5959 21 6 2.0938 -5.8719 2.8834 22 17 2.9964 -5.5433 4.3294 23 1 -0.3633 0.4513 0.9234 24 1 -0.3634 0.5741 -0.8524 25 1 -0.3633 -1.0251 -0.0708 26 1 1.5612 1.9274 0.8310 27 1 3.0798 1.3444 0.1082 28 1 2.9876 4.9177 -0.7773 29 1 1.5612 -0.3872 2.0628 30 1 3.0797 -0.6611 1.1756 31 1 0.5472 -2.3475 0.9322 32 1 2.0658 -2.6214 0.0451 33 1 0.7906 -4.2998 0.1835 34 1 0.6623 -8.4355 1.2229 35 1 1.9426 -7.9679 3.2717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637604.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:00 Heat of formation + Delta-G solvation = -5.047466 kcal Electronic energy + Delta-G solvation = -18830.584107 eV Core-core repulsion = 15619.663936 eV Total energy + Delta-G solvation = -3210.920171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.026 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35874 -38.61327 -37.83733 -37.25665 -34.88018 -32.78271 -31.96987 -31.46872 -28.99665 -27.20831 -24.60077 -24.32719 -23.45108 -21.83304 -19.17273 -18.49081 -17.73251 -17.12400 -16.87889 -16.64277 -16.38244 -16.02268 -15.33092 -15.27214 -14.91760 -14.76479 -14.50129 -13.93454 -13.54326 -13.34041 -13.24245 -13.19627 -12.97291 -12.76485 -12.55000 -12.44777 -12.27236 -12.11580 -12.09334 -12.01225 -11.81269 -11.29361 -11.23292 -10.89993 -10.63596 -9.84202 -9.13582 -8.59678 -8.21909 -6.32046 -0.25559 -0.07429 0.21762 0.87427 0.98910 1.40194 1.41346 1.42205 1.55573 2.24218 2.39977 3.11134 3.32420 3.52760 3.73049 3.85304 3.94766 4.02485 4.09880 4.36745 4.46915 4.53135 4.59172 4.60563 4.73689 4.79862 4.91573 5.00086 5.04850 5.15714 5.26988 5.37707 5.62882 6.00656 6.23171 6.52722 6.83758 7.37733 8.89650 Molecular weight = 319.03amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002826 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.246625 B = 9904.934929 C =11396.639735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.542 5.542 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.074 3.926 13 C -0.097 4.097 14 S -0.086 6.086 15 C -0.078 4.078 16 C -0.126 4.126 17 C -0.017 4.017 18 Cl -0.056 7.056 19 C -0.100 4.100 20 C -0.071 4.071 21 C -0.035 4.035 22 Cl -0.050 7.050 23 H 0.013 0.987 24 H 0.061 0.939 25 H 0.082 0.918 26 H -0.035 1.035 27 H 0.005 0.995 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -26.560 6.464 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.267 5.267 3 C 0.080 3.920 4 C -0.561 4.561 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.056 4.056 13 C -0.245 4.245 14 S 0.160 5.840 15 C -0.193 4.193 16 C -0.151 4.151 17 C -0.046 4.046 18 Cl -0.027 7.027 19 C -0.122 4.122 20 C -0.091 4.091 21 C -0.069 4.069 22 Cl -0.021 7.021 23 H 0.031 0.969 24 H 0.080 0.920 25 H 0.100 0.900 26 H -0.017 1.017 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.161 0.839 34 H 0.191 0.809 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.560 -26.035 6.997 27.193 hybrid contribution -0.876 1.000 -0.914 1.613 sum -4.436 -25.035 6.083 26.143 Atomic orbital electron populations 1.22311 0.87259 1.01557 1.00145 1.62039 1.08515 1.15446 1.40731 1.19417 0.93816 0.83419 0.95316 1.21489 1.34904 0.97482 1.02253 0.91577 1.25930 0.94983 0.98094 1.00722 1.70093 1.39331 1.11927 1.36196 0.85316 0.78059 0.78206 0.78929 1.18554 1.20465 1.20474 1.21641 1.00371 0.91095 0.92465 1.23695 1.04726 0.96904 0.99213 1.85875 1.69798 0.96743 1.31585 1.21693 1.02440 0.97495 0.97639 1.21147 0.99912 0.97235 0.96788 1.21008 0.98423 0.94391 0.90796 1.98403 1.72870 1.95345 1.36096 1.21369 0.98165 1.00049 0.92594 1.21289 0.95992 0.94451 0.97400 1.20693 1.01194 0.94356 0.90620 1.98394 1.72864 1.95521 1.35297 0.96888 0.92012 0.89976 1.01745 0.97674 0.92655 0.94912 0.91289 0.88143 0.88208 0.83912 0.80920 0.80672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 9.14 127.69 1.17 2.47 16 2 N -0.54 -22.83 4.75 -927.03 -4.41 -27.24 16 3 C 0.21 10.97 4.72 85.55 0.40 11.37 16 4 C -0.52 -29.38 8.46 25.60 0.22 -29.17 16 5 H 0.07 3.62 7.12 -2.91 -0.02 3.60 16 6 C 0.00 0.04 5.46 84.66 0.46 0.50 16 7 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 8 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.07 2.57 4.97 86.30 0.43 3.00 16 13 C -0.10 -2.61 4.26 71.98 0.31 -2.30 16 14 S -0.09 -2.18 20.83 -56.49 -1.18 -3.35 16 15 C -0.08 -1.72 6.11 22.63 0.14 -1.58 16 16 C -0.13 -2.56 9.14 22.43 0.21 -2.35 16 17 C -0.02 -0.30 6.32 22.31 0.14 -0.16 16 18 Cl -0.06 -0.94 28.95 -2.72 -0.08 -1.01 16 19 C -0.10 -1.26 9.83 22.32 0.22 -1.04 16 20 C -0.07 -0.94 9.82 22.27 0.22 -0.72 16 21 C -0.03 -0.67 6.34 22.45 0.14 -0.52 16 22 Cl -0.05 -0.98 27.83 -2.72 -0.08 -1.05 16 23 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.06 2.46 6.76 -2.38 -0.02 2.45 16 25 H 0.08 2.38 6.47 -2.39 -0.02 2.37 16 26 H -0.04 -2.03 8.12 -2.38 -0.02 -2.04 16 27 H 0.01 0.30 7.93 -2.39 -0.02 0.28 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 30 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 31 H 0.10 2.45 6.15 -2.39 -0.01 2.44 16 32 H 0.10 2.67 7.76 -2.39 -0.02 2.65 16 33 H 0.14 2.92 5.88 -2.91 -0.02 2.90 16 34 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -63.49 335.88 1.73 -61.76 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.10 Total: 1.32 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.05 Total: -20.49 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -4.12 Total: -83.18 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -1.18 Total: -3.35 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.07 kcal Total: -63.49 1.73 -61.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637604.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.717 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds