Wall clock time and date at job start Tue Mar 31 2020 12:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35925 * 117.00233 * 2 1 4 4 C 1.38744 * 120.03890 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.95659 * 180.02562 * 4 3 2 6 6 C 1.38388 * 120.03977 * 0.02562 * 5 4 3 7 7 Cl 1.73605 * 119.95518 * 179.97438 * 6 5 4 8 8 C 1.38341 * 120.08845 * 0.02562 * 6 5 4 9 9 S 1.76205 * 119.97849 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.39731 * 182.28069 * 9 8 6 11 11 O 1.42097 * 106.40552 * 49.35759 * 9 8 6 12 12 N 1.65597 * 107.21540 * 295.81517 * 9 8 6 13 13 C 1.46499 * 120.00288 * 295.00345 * 12 9 8 14 14 H 1.08999 * 109.46762 * 23.74390 * 13 12 9 15 15 C 1.52993 * 109.47163 * 263.74059 * 13 12 9 16 16 C 1.50707 * 109.46908 * 143.74088 * 13 12 9 17 17 H 1.07995 * 120.00402 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99558 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00171 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99654 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46891 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46975 * 210.00051 * 20 18 16 23 23 H 1.48493 * 109.47331 * 330.00068 * 20 18 16 24 24 C 1.38168 * 120.04194 * 0.24916 * 8 6 5 25 25 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47280 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.47443 * 59.99648 * 1 2 3 28 28 H 1.07999 * 120.02387 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.97975 * 179.97438 * 5 4 3 30 30 H 0.97008 * 119.99804 * 115.00493 * 12 9 8 31 31 H 1.09003 * 109.47246 * 59.99789 * 15 13 12 32 32 H 1.09003 * 109.47261 * 300.00247 * 15 13 12 33 33 H 1.09005 * 109.47242 * 180.02562 * 15 13 12 34 34 H 0.97001 * 119.99564 * 180.02562 * 19 18 16 35 35 H 1.07997 * 120.02097 * 179.72995 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6050 -0.0011 6 6 3.3022 3.6763 -0.0016 7 17 4.0903 5.2231 -0.0030 8 6 4.0565 2.5167 -0.0021 9 16 5.8160 2.6109 -0.0035 10 8 6.2894 1.2722 -0.0581 11 8 6.1701 3.5190 1.0305 12 7 6.2675 3.3249 -1.4278 13 6 6.0069 2.6487 -2.7011 14 1 5.1808 1.9484 -2.5780 15 6 7.2595 1.8879 -3.1402 16 6 5.6471 3.6711 -3.7482 17 1 5.6153 4.7195 -3.4910 18 6 5.3585 3.2678 -5.0348 19 7 5.3967 1.9911 -5.3480 20 14 4.9118 4.5349 -6.3326 21 1 6.1452 4.9963 -7.0191 22 1 3.9920 3.9236 -7.3253 23 1 4.2433 5.6921 -5.6853 24 6 3.4311 1.2846 -0.0073 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3199 -0.0005 29 1 1.3329 4.5114 -0.0019 30 1 6.7046 4.1908 -1.4191 31 1 7.5198 1.1485 -2.3828 32 1 8.0856 2.5883 -3.2632 33 1 7.0657 1.3852 -4.0878 34 1 5.1941 1.7076 -6.2532 35 1 4.0203 0.3796 -0.0122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112361923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:35 Heat of formation + Delta-G solvation = -89.027372 kcal Electronic energy + Delta-G solvation = -23156.711187 eV Core-core repulsion = 19501.440210 eV Total energy + Delta-G solvation = -3655.270977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23834 -37.77697 -36.74276 -36.10893 -35.40858 -35.31119 -32.18675 -31.51407 -30.11194 -28.25904 -27.44804 -25.19279 -23.34744 -22.55400 -20.92531 -19.37816 -18.27963 -17.32379 -16.76693 -16.58512 -16.06425 -15.93789 -15.85926 -15.22553 -14.63073 -14.12603 -13.89638 -13.64502 -13.38462 -12.82598 -12.60971 -12.52674 -12.19111 -11.99120 -11.68507 -11.60484 -11.53879 -11.40231 -11.16226 -11.08779 -10.98586 -10.77909 -10.56629 -10.44406 -10.26576 -10.09802 -9.47540 -9.19011 -8.61312 -8.29267 -8.21745 -6.12007 -4.19661 0.64706 1.00779 1.16677 2.11371 3.09689 3.24270 3.29310 3.31418 3.34216 3.67535 4.22286 4.35326 4.52777 4.69991 4.81073 4.92633 4.95966 5.19780 5.21586 5.27513 5.33326 5.70646 5.75540 5.92928 6.05166 6.26539 6.34772 6.84659 7.07688 7.11220 7.17638 7.60155 7.71882 7.83762 8.05465 8.29018 8.83866 9.46434 10.93646 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.006117 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.915701 B = 4575.974228 C = 5185.820721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.110 3.890 4 C -0.150 4.150 5 C -0.091 4.091 6 C 0.027 3.973 7 Cl -0.042 7.042 8 C -0.623 4.623 9 S 2.686 3.314 10 O -0.957 6.957 11 O -0.965 6.965 12 N -1.091 6.091 13 C 0.275 3.725 14 H 0.040 0.960 15 C -0.157 4.157 16 C -0.522 4.522 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.037 4.037 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.411 0.589 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.264 0.736 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 0.170 9.912 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.064 3.936 4 C -0.169 4.169 5 C -0.111 4.111 6 C -0.001 4.001 7 Cl -0.012 7.012 8 C -0.706 4.706 9 S 2.771 3.229 10 O -0.947 6.947 11 O -0.955 6.955 12 N -0.853 5.853 13 C 0.171 3.829 14 H 0.058 0.942 15 C -0.217 4.217 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.057 4.057 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.245 0.755 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.219 -0.496 10.413 13.916 hybrid contribution -1.197 1.401 -1.213 2.206 sum -10.415 0.904 9.200 13.926 Atomic orbital electron populations 1.23113 0.78270 1.04279 1.01384 1.86124 1.21449 1.26134 1.88665 1.19033 0.92318 0.84548 0.97712 1.21385 1.00411 0.91721 1.03431 1.20883 0.92264 0.98308 0.99628 1.20251 0.93024 0.86321 1.00544 1.98424 1.79720 1.26716 1.96366 1.31094 1.29152 0.96541 1.13828 1.02210 0.73250 0.74078 0.73365 1.93570 1.77393 1.37012 1.86764 1.93573 1.81851 1.64498 1.55576 1.55516 1.73482 1.34097 1.22221 1.18541 0.93989 0.91709 0.78638 0.94188 1.22224 0.97931 0.98950 1.02560 1.21290 1.47296 0.93575 0.93987 0.91645 1.24903 0.95172 0.95392 0.98345 1.69883 1.48461 1.14116 1.20005 0.86518 0.78409 0.81381 0.81244 1.20520 1.21229 1.19849 1.20171 0.92003 0.97025 0.96525 0.87944 0.92628 0.92360 0.84127 0.83986 0.75455 0.95607 0.94817 0.88962 0.92632 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.13 10.50 -19.51 -0.20 -4.33 16 3 C 0.11 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.15 -1.91 9.04 -39.44 -0.36 -2.27 16 5 C -0.09 -1.26 9.82 -39.57 -0.39 -1.65 16 6 C 0.03 0.45 6.30 -39.49 -0.25 0.20 16 7 Cl -0.04 -0.69 26.45 -51.86 -1.37 -2.06 16 8 C -0.62 -11.30 5.75 -39.57 -0.23 -11.53 16 9 S 2.69 52.67 4.96 -107.50 -0.53 52.14 16 10 O -0.96 -20.60 16.36 -57.17 -0.94 -21.53 16 11 O -0.97 -19.36 16.55 -57.17 -0.95 -20.31 16 12 N -1.09 -22.32 5.17 -5.88 -0.03 -22.36 16 13 C 0.28 6.59 2.77 -69.08 -0.19 6.40 16 14 H 0.04 1.02 7.85 -51.93 -0.41 0.62 16 15 C -0.16 -3.76 9.29 37.15 0.35 -3.42 16 16 C -0.52 -13.35 8.77 -34.44 -0.30 -13.65 16 17 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 20 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.04 -0.64 9.49 -39.44 -0.37 -1.01 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.14 1.25 6.30 -52.49 -0.33 0.92 16 29 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.41 7.69 8.84 -34.47 -0.30 7.38 16 31 H 0.02 0.58 7.78 -51.93 -0.40 0.18 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.16 2.64 7.33 -52.49 -0.38 2.26 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -30.98 325.15 -8.38 -39.36 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.76 Total: 5.04 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -1.11 Total: -22.76 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.60 Total: -45.82 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.09 Total: -46.17 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.53 Total: 52.14 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.37 Total: -2.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.98 -8.38 -39.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112361923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.670 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds