Wall clock time and date at job start Tue Mar 31 2020 12:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35925 * 117.00233 * 2 1 4 4 C 1.38744 * 120.03890 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.95659 * 180.02562 * 4 3 2 6 6 C 1.38388 * 120.03977 * 0.02562 * 5 4 3 7 7 Cl 1.73605 * 119.95518 * 179.97438 * 6 5 4 8 8 C 1.38341 * 120.08845 * 0.02562 * 6 5 4 9 9 S 1.76205 * 119.97849 * 179.97438 * 8 6 5 10 10 O 1.42099 * 106.39731 * 182.28069 * 9 8 6 11 11 O 1.42097 * 106.40552 * 49.35759 * 9 8 6 12 12 N 1.65597 * 107.21540 * 295.81517 * 9 8 6 13 13 C 1.46499 * 120.00288 * 295.00345 * 12 9 8 14 14 H 1.08999 * 109.46762 * 23.74390 * 13 12 9 15 15 C 1.52993 * 109.47163 * 263.74059 * 13 12 9 16 16 C 1.50707 * 109.46908 * 143.74088 * 13 12 9 17 17 H 1.07995 * 120.00402 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99558 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00171 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99654 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46891 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46975 * 210.00051 * 20 18 16 23 23 H 1.48493 * 109.47331 * 330.00068 * 20 18 16 24 24 C 1.38168 * 120.04194 * 0.24916 * 8 6 5 25 25 H 1.08999 * 109.47391 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47280 * 299.99561 * 1 2 3 27 27 H 1.09001 * 109.47443 * 59.99648 * 1 2 3 28 28 H 1.07999 * 120.02387 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.97975 * 179.97438 * 5 4 3 30 30 H 0.97008 * 119.99804 * 115.00493 * 12 9 8 31 31 H 1.09003 * 109.47246 * 59.99789 * 15 13 12 32 32 H 1.09003 * 109.47261 * 300.00247 * 15 13 12 33 33 H 1.09005 * 109.47242 * 180.02562 * 15 13 12 34 34 H 0.97001 * 119.99564 * 180.02562 * 19 18 16 35 35 H 1.07997 * 120.02097 * 179.72995 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9201 3.6050 -0.0011 6 6 3.3022 3.6763 -0.0016 7 17 4.0903 5.2231 -0.0030 8 6 4.0565 2.5167 -0.0021 9 16 5.8160 2.6109 -0.0035 10 8 6.2894 1.2722 -0.0581 11 8 6.1701 3.5190 1.0305 12 7 6.2675 3.3249 -1.4278 13 6 6.0069 2.6487 -2.7011 14 1 5.1808 1.9484 -2.5780 15 6 7.2595 1.8879 -3.1402 16 6 5.6471 3.6711 -3.7482 17 1 5.6153 4.7195 -3.4910 18 6 5.3585 3.2678 -5.0348 19 7 5.3967 1.9911 -5.3480 20 14 4.9118 4.5349 -6.3326 21 1 6.1452 4.9963 -7.0191 22 1 3.9920 3.9236 -7.3253 23 1 4.2433 5.6921 -5.6853 24 6 3.4311 1.2846 -0.0073 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2127 2.3199 -0.0005 29 1 1.3329 4.5114 -0.0019 30 1 6.7046 4.1908 -1.4191 31 1 7.5198 1.1485 -2.3828 32 1 8.0856 2.5883 -3.2632 33 1 7.0657 1.3852 -4.0878 34 1 5.1941 1.7076 -6.2532 35 1 4.0203 0.3796 -0.0122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112361923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:35 Heat of formation + Delta-G solvation = -110.931515 kcal Electronic energy + Delta-G solvation = -23157.661022 eV Core-core repulsion = 19501.440210 eV Total energy + Delta-G solvation = -3656.220812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29954 -38.88539 -38.33818 -37.37580 -37.21823 -36.94059 -34.10624 -32.66791 -31.22107 -30.12306 -28.22564 -27.19977 -24.52444 -23.71150 -22.81116 -20.73827 -19.70051 -19.01614 -18.08204 -17.78252 -17.59283 -17.23185 -17.00907 -16.77415 -16.26297 -15.38672 -15.24134 -14.94648 -14.62299 -14.50109 -14.09783 -13.85275 -13.51097 -13.49083 -13.26702 -13.15817 -12.99886 -12.91802 -12.81203 -12.51903 -12.36967 -12.34031 -12.21678 -11.98524 -11.83911 -11.72300 -11.10178 -10.66177 -10.54523 -10.11458 -9.35813 -8.10442 -6.24158 -0.67901 -0.42543 0.00501 0.87284 1.45894 1.47762 1.56696 1.99392 2.15654 2.24650 2.47239 2.70328 3.19341 3.36080 3.55411 3.76124 3.93665 4.12316 4.35010 4.40193 4.48042 4.54216 4.57204 4.72053 4.82779 4.91878 4.95376 5.12904 5.17527 5.21845 5.62187 5.76022 6.04257 6.10874 6.21628 6.42441 6.86206 7.45071 8.95060 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.006117 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.915701 B = 4575.974228 C = 5185.820721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.329 6.329 3 C 0.110 3.890 4 C -0.134 4.134 5 C -0.086 4.086 6 C 0.005 3.995 7 Cl -0.047 7.047 8 C -0.639 4.639 9 S 2.698 3.302 10 O -0.985 6.985 11 O -0.972 6.972 12 N -1.091 6.091 13 C 0.282 3.718 14 H 0.020 0.980 15 C -0.152 4.152 16 C -0.531 4.531 17 H 0.070 0.930 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.267 1.267 24 C -0.067 4.067 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.188 0.812 29 H 0.178 0.822 30 H 0.418 0.582 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 1.257 9.985 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.243 6.243 3 C 0.064 3.936 4 C -0.153 4.153 5 C -0.104 4.104 6 C -0.023 4.023 7 Cl -0.018 7.018 8 C -0.726 4.726 9 S 2.786 3.214 10 O -0.975 6.975 11 O -0.962 6.962 12 N -0.852 5.852 13 C 0.177 3.823 14 H 0.037 0.963 15 C -0.212 4.212 16 C -0.570 4.570 17 H 0.088 0.912 18 C -0.181 4.181 19 N -0.554 5.554 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 C -0.087 4.087 25 H 0.140 0.860 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.205 0.795 29 H 0.195 0.805 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.727 0.601 10.500 15.752 hybrid contribution -0.543 0.978 -1.166 1.615 sum -12.270 1.579 9.334 15.498 Atomic orbital electron populations 1.23539 0.75467 1.06343 1.03008 1.86119 1.24337 1.25540 1.88271 1.19110 0.91686 0.86043 0.96796 1.21892 1.02532 0.90221 1.00610 1.21357 0.91117 1.00235 0.97740 1.20517 0.94386 0.85582 1.01846 1.98414 1.80110 1.26819 1.96478 1.30635 1.27609 0.97827 1.16570 1.01549 0.73867 0.73183 0.72765 1.93527 1.78790 1.38231 1.86950 1.93554 1.82699 1.64549 1.55432 1.55310 1.74283 1.34227 1.21405 1.18246 0.93085 0.91322 0.79662 0.96263 1.22139 0.98353 0.99084 1.01590 1.21556 1.46982 0.93997 0.94476 0.91211 1.25637 0.95202 0.96990 1.00251 1.70006 1.49275 1.15705 1.20395 0.85573 0.78117 0.79278 0.78772 1.20201 1.21177 1.19113 1.20217 0.93701 0.96356 0.98398 0.85973 0.90317 0.91205 0.79514 0.80506 0.74652 0.95361 0.94072 0.90937 0.92646 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -8.15 10.50 -92.71 -0.97 -9.12 16 3 C 0.11 3.10 6.69 22.50 0.15 3.25 16 4 C -0.13 -2.92 9.04 22.36 0.20 -2.72 16 5 C -0.09 -2.10 9.82 22.28 0.22 -1.88 16 6 C 0.01 0.16 6.30 22.33 0.14 0.31 16 7 Cl -0.05 -1.53 26.45 -2.72 -0.07 -1.60 16 8 C -0.64 -23.39 5.75 22.28 0.13 -23.26 16 9 S 2.70 108.46 4.96 -56.49 -0.28 108.18 16 10 O -0.98 -44.09 16.36 -128.00 -2.09 -46.19 16 11 O -0.97 -39.53 16.55 -128.00 -2.12 -41.64 16 12 N -1.09 -45.38 5.17 -172.52 -0.89 -46.27 16 13 C 0.28 13.76 2.77 44.25 0.12 13.88 16 14 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 15 C -0.15 -7.45 9.29 71.98 0.67 -6.78 16 16 C -0.53 -27.11 8.77 25.60 0.22 -26.89 16 17 H 0.07 3.43 7.81 -2.91 -0.02 3.41 16 18 C 0.02 1.00 5.30 84.66 0.45 1.45 16 19 N -0.91 -50.16 11.32 21.45 0.24 -49.92 16 20 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 C -0.07 -2.31 9.49 22.36 0.21 -2.10 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 0.69 7.66 -2.39 -0.02 0.67 16 27 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 28 H 0.19 2.26 6.30 -2.91 -0.02 2.24 16 29 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.42 15.80 8.84 -96.74 -0.86 14.95 16 31 H 0.03 1.31 7.78 -2.39 -0.02 1.29 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 34 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.15 5.24 7.33 -2.91 -0.02 5.22 16 Total: -1.00 -67.07 325.15 -0.25 -67.32 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.28 Total: 19.42 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 3.63 Total: -43.49 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -0.65 Total: -96.19 kcal Atomic # 8 Polarization: -91.76 SS G_CDS: -5.19 Total: -96.95 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 108.46 SS G_CDS: -0.28 Total: 108.18 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -67.07 -0.25 -67.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112361923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.614 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds