Wall clock time and date at job start Tue Mar 31 2020 12:19:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30629 * 1
3 3 Si 1.86805 * 119.99933 * 2 1
4 4 H 1.48500 * 109.46965 * 269.99644 * 3 2 1
5 5 H 1.48498 * 109.46863 * 29.99664 * 3 2 1
6 6 H 1.48496 * 109.47144 * 149.99264 * 3 2 1
7 7 C 1.40137 * 120.00379 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00087 * 180.02562 * 7 2 1
9 9 C 1.41729 * 119.99718 * 0.02562 * 7 2 1
10 10 O 1.21789 * 120.00325 * 359.97438 * 9 7 2
11 11 N 1.34782 * 120.00134 * 180.02562 * 9 7 2
12 12 C 1.39461 * 119.99925 * 175.43199 * 11 9 7
13 13 C 1.39138 * 120.02380 * 215.12942 * 12 11 9
14 14 C 1.37930 * 119.97293 * 180.02562 * 13 12 11
15 15 C 1.38907 * 120.02788 * 0.02562 * 14 13 12
16 16 O 1.35879 * 119.97082 * 179.97438 * 15 14 13
17 17 C 1.35686 * 117.99841 * 75.12631 * 16 15 14
18 18 C 1.39331 * 120.12800 * 175.02994 * 17 16 15
19 19 C 1.38590 * 117.93072 * 179.97438 * 18 17 16
20 20 C 1.38913 * 118.01052 * 0.02562 * 19 18 17
21 21 Cl 1.73599 * 120.02867 * 179.97438 * 20 19 18
22 22 N 1.31919 * 119.95017 * 359.97438 * 20 19 18
23 23 N 1.28353 * 122.24304 * 0.02562 * 22 20 19
24 24 C 1.38901 * 120.05249 * 0.24015 * 15 14 13
25 25 C 1.37938 * 120.02780 * 359.48023 * 24 15 14
26 26 H 0.97004 * 120.00376 * 0.02562 * 1 2 3
27 27 H 0.96999 * 119.99628 * 355.42627 * 11 9 7
28 28 H 1.08000 * 120.00722 * 0.02562 * 13 12 11
29 29 H 1.08007 * 119.98706 * 180.02562 * 14 13 12
30 30 H 1.07992 * 121.03080 * 359.95309 * 18 17 16
31 31 H 1.07994 * 120.99765 * 180.02562 * 19 18 17
32 32 H 1.08009 * 119.98321 * 179.72288 * 24 15 14
33 33 H 1.07999 * 120.01392 * 180.25160 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4879 2.0464 -1.4001
5 1 1.4377 2.6527 0.7000
6 1 3.5377 1.4403 0.7002
7 6 2.0071 -1.2136 0.0005
8 1 3.0871 -1.2135 0.0010
9 6 1.2984 -2.4410 0.0005
10 8 0.0805 -2.4411 0.0005
11 7 1.9723 -3.6082 0.0016
12 6 1.2783 -4.8140 0.0978
13 6 1.8310 -5.8815 0.7985
14 6 1.1438 -7.0738 0.8925
15 6 -0.0992 -7.2092 0.2876
16 8 -0.7749 -8.3844 0.3805
17 6 -1.3745 -8.6829 1.5605
18 6 -2.1648 -9.8247 1.6743
19 6 -2.7551 -10.0860 2.9007
20 6 -2.5231 -9.1937 3.9398
21 17 -3.2372 -9.4699 5.4978
22 7 -1.7597 -8.1363 3.7417
23 7 -1.2110 -7.8905 2.6077
24 6 -0.6496 -6.1461 -0.4169
25 6 0.0330 -4.9509 -0.5075
26 1 -0.4851 0.8400 -0.0004
27 1 2.9401 -3.6096 -0.0647
28 1 2.7976 -5.7765 1.2685
29 1 1.5725 -7.9024 1.4367
30 1 -2.3129 -10.4853 0.8330
31 1 -3.3769 -10.9572 3.0442
32 1 -1.6142 -6.2541 -0.8906
33 1 -0.3969 -4.1231 -1.0518
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186372514.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:02
Heat of formation + Delta-G solvation = 22.848129 kcal
Electronic energy + Delta-G solvation = -22602.961936 eV
Core-core repulsion = 18849.391044 eV
Total energy + Delta-G solvation = -3753.570892 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.051 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.59065 -39.84033 -38.60841 -37.08863 -36.55018 -33.69312 -33.31973 -32.46019
-31.62520 -30.51953 -28.64087 -26.49376 -25.11070 -24.51410 -22.56374 -22.08291
-20.12834 -19.04842 -18.05628 -17.68620 -17.50090 -16.43189 -16.25606 -15.60271
-15.49395 -14.90719 -14.66807 -14.15142 -13.96263 -13.74772 -13.40593 -13.08405
-12.80244 -12.67119 -12.14454 -12.01055 -11.89856 -11.74038 -11.69323 -11.33007
-11.12749 -10.76672 -10.66812 -10.55305 -10.37159 -9.88813 -9.41209 -9.15940
-8.87845 -8.54627 -7.75278 -7.14945 -6.41468 -4.95188 0.36969 0.54523
1.31833 1.54090 1.87924 2.92160 3.03797 3.10978 3.14442 3.16064
3.84919 3.94679 4.08476 4.16014 4.39482 4.42578 4.50636 4.59330
4.94732 5.25980 5.29846 5.33258 5.48970 5.64511 5.82275 5.94345
6.11395 6.44738 6.48815 6.74681 6.98119 7.13453 7.20776 7.48348
7.79423 7.97352 8.11091 8.30965 8.76019 9.21016 10.33232 10.52698
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.020440 B = 0.002649 C = 0.002469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1369.510193 B =10569.363815 C =11338.400930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.745 5.745
2 C 0.087 3.913
3 Si 0.914 3.086
4 H -0.270 1.270
5 H -0.277 1.277
6 H -0.263 1.263
7 C -0.537 4.537
8 H 0.071 0.929
9 C 0.542 3.458
10 O -0.565 6.565
11 N -0.700 5.700
12 C 0.210 3.790
13 C -0.166 4.166
14 C -0.082 4.082
15 C 0.012 3.988
16 O -0.228 6.228
17 C 0.263 3.737
18 C -0.121 4.121
19 C -0.075 4.075
20 C 0.074 3.926
21 Cl -0.010 7.010
22 N -0.188 5.188
23 N -0.256 5.256
24 C -0.088 4.088
25 C -0.120 4.120
26 H 0.274 0.726
27 H 0.394 0.606
28 H 0.125 0.875
29 H 0.118 0.882
30 H 0.167 0.833
31 H 0.166 0.834
32 H 0.123 0.877
33 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.873 -19.495 3.328 19.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.373 5.373
2 C -0.136 4.136
3 Si 0.738 3.262
4 H -0.195 1.195
5 H -0.202 1.202
6 H -0.187 1.187
7 C -0.572 4.572
8 H 0.089 0.911
9 C 0.351 3.649
10 O -0.448 6.448
11 N -0.342 5.342
12 C 0.109 3.891
13 C -0.188 4.188
14 C -0.101 4.101
15 C -0.031 4.031
16 O -0.130 6.130
17 C 0.079 3.921
18 C -0.151 4.151
19 C -0.104 4.104
20 C -0.100 4.100
21 Cl 0.018 6.982
22 N -0.034 5.034
23 N -0.113 5.113
24 C -0.107 4.107
25 C -0.141 4.141
26 H 0.085 0.915
27 H 0.228 0.772
28 H 0.143 0.857
29 H 0.136 0.864
30 H 0.185 0.815
31 H 0.183 0.817
32 H 0.141 0.859
33 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -3.238 -18.034 3.777 18.707
hybrid contribution 0.269 -0.443 -0.238 0.570
sum -2.970 -18.476 3.539 19.045
Atomic orbital electron populations
1.70002 1.07298 1.28006 1.31967 1.25770 0.94671 1.00742 0.92408
0.86264 0.80205 0.80701 0.79061 1.19474 1.20196 1.18665 1.20033
0.94394 0.89923 1.52817 0.91083 1.17092 0.87653 0.82015 0.78114
1.90650 1.13523 1.85791 1.54841 1.44268 1.09734 1.04314 1.75895
1.18131 0.92906 0.86487 0.91573 1.20774 1.02195 0.93258 1.02593
1.20796 0.93798 0.97374 0.98131 1.18388 0.92471 0.85254 1.06941
1.84712 1.63361 1.37684 1.27257 1.22051 0.90229 0.91605 0.88206
1.21584 0.96960 0.97211 0.99336 1.22062 0.98124 0.99602 0.90607
1.23380 1.00232 0.96009 0.90349 1.98416 1.80486 1.94920 1.24418
1.72828 1.03354 1.13848 1.13337 1.73466 1.18409 1.24575 0.94852
1.20952 0.99507 0.90863 0.99360 1.21381 0.95496 0.96626 1.00636
0.91549 0.77237 0.85720 0.86417 0.81544 0.81684 0.85927 0.82994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.75 -21.27 11.73 55.55 0.65 -20.62 16
2 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16
3 Si 0.91 19.12 29.56 -169.99 -5.02 14.10 16
4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16
5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16
6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16
7 C -0.54 -14.35 9.31 -37.54 -0.35 -14.70 16
8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16
9 C 0.54 14.75 7.41 -14.92 -0.11 14.64 16
10 O -0.56 -17.31 12.30 5.11 0.06 -17.25 16
11 N -0.70 -15.39 5.31 -12.41 -0.07 -15.46 16
12 C 0.21 4.33 6.30 -83.72 -0.53 3.80 16
13 C -0.17 -2.90 9.97 -39.36 -0.39 -3.29 16
14 C -0.08 -1.34 9.46 -39.45 -0.37 -1.72 16
15 C 0.01 0.21 5.23 -39.09 -0.20 0.00 16
16 O -0.23 -3.39 9.98 -2.89 -0.03 -3.42 16
17 C 0.26 3.63 7.48 -16.93 -0.13 3.51 16
18 C -0.12 -1.13 10.16 -39.05 -0.40 -1.53 16
19 C -0.08 -0.63 9.99 -39.20 -0.39 -1.02 16
20 C 0.07 0.85 7.37 -17.26 -0.13 0.72 16
21 Cl -0.01 -0.10 29.13 -51.86 -1.51 -1.61 16
22 N -0.19 -2.90 11.48 32.90 0.38 -2.52 16
23 N -0.26 -4.23 10.18 30.51 0.31 -3.92 16
24 C -0.09 -1.59 9.98 -39.45 -0.39 -1.98 16
25 C -0.12 -2.54 8.68 -39.36 -0.34 -2.88 16
26 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16
27 H 0.39 7.32 8.78 -40.82 -0.36 6.96 16
28 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16
29 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16
30 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16
31 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16
32 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16
33 H 0.15 3.62 6.22 -52.49 -0.33 3.30 16
LS Contribution 319.25 15.07 4.81 4.81
Total: -1.00 -33.48 319.25 -6.59 -40.08
By element:
Atomic # 1 Polarization: 10.38 SS G_CDS: -2.34 Total: 8.04 kcal
Atomic # 6 Polarization: 1.59 SS G_CDS: -3.83 Total: -2.24 kcal
Atomic # 7 Polarization: -43.78 SS G_CDS: 1.27 Total: -42.51 kcal
Atomic # 8 Polarization: -20.70 SS G_CDS: 0.03 Total: -20.67 kcal
Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal
Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -33.48 -6.59 -40.08 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186372514.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.924 kcal
(2) G-P(sol) polarization free energy of solvation -33.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds