Wall clock time and date at job start Tue Mar 31 2020 12:19:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30629 * 1
3 3 Si 1.86805 * 119.99933 * 2 1
4 4 H 1.48500 * 109.46965 * 269.99644 * 3 2 1
5 5 H 1.48498 * 109.46863 * 29.99664 * 3 2 1
6 6 H 1.48496 * 109.47144 * 149.99264 * 3 2 1
7 7 C 1.40137 * 120.00379 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00087 * 180.02562 * 7 2 1
9 9 C 1.41729 * 119.99718 * 0.02562 * 7 2 1
10 10 O 1.21789 * 120.00325 * 359.97438 * 9 7 2
11 11 N 1.34782 * 120.00134 * 180.02562 * 9 7 2
12 12 C 1.39461 * 119.99925 * 175.43199 * 11 9 7
13 13 C 1.39138 * 120.02380 * 215.12942 * 12 11 9
14 14 C 1.37930 * 119.97293 * 180.02562 * 13 12 11
15 15 C 1.38907 * 120.02788 * 0.02562 * 14 13 12
16 16 O 1.35879 * 119.97082 * 179.97438 * 15 14 13
17 17 C 1.35686 * 117.99841 * 75.12631 * 16 15 14
18 18 C 1.39331 * 120.12800 * 175.02994 * 17 16 15
19 19 C 1.38590 * 117.93072 * 179.97438 * 18 17 16
20 20 C 1.38913 * 118.01052 * 0.02562 * 19 18 17
21 21 Cl 1.73599 * 120.02867 * 179.97438 * 20 19 18
22 22 N 1.31919 * 119.95017 * 359.97438 * 20 19 18
23 23 N 1.28353 * 122.24304 * 0.02562 * 22 20 19
24 24 C 1.38901 * 120.05249 * 0.24015 * 15 14 13
25 25 C 1.37938 * 120.02780 * 359.48023 * 24 15 14
26 26 H 0.97004 * 120.00376 * 0.02562 * 1 2 3
27 27 H 0.96999 * 119.99628 * 355.42627 * 11 9 7
28 28 H 1.08000 * 120.00722 * 0.02562 * 13 12 11
29 29 H 1.08007 * 119.98706 * 180.02562 * 14 13 12
30 30 H 1.07992 * 121.03080 * 359.95309 * 18 17 16
31 31 H 1.07994 * 120.99765 * 180.02562 * 19 18 17
32 32 H 1.08009 * 119.98321 * 179.72288 * 24 15 14
33 33 H 1.07999 * 120.01392 * 180.25160 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4879 2.0464 -1.4001
5 1 1.4377 2.6527 0.7000
6 1 3.5377 1.4403 0.7002
7 6 2.0071 -1.2136 0.0005
8 1 3.0871 -1.2135 0.0010
9 6 1.2984 -2.4410 0.0005
10 8 0.0805 -2.4411 0.0005
11 7 1.9723 -3.6082 0.0016
12 6 1.2783 -4.8140 0.0978
13 6 1.8310 -5.8815 0.7985
14 6 1.1438 -7.0738 0.8925
15 6 -0.0992 -7.2092 0.2876
16 8 -0.7749 -8.3844 0.3805
17 6 -1.3745 -8.6829 1.5605
18 6 -2.1648 -9.8247 1.6743
19 6 -2.7551 -10.0860 2.9007
20 6 -2.5231 -9.1937 3.9398
21 17 -3.2372 -9.4699 5.4978
22 7 -1.7597 -8.1363 3.7417
23 7 -1.2110 -7.8905 2.6077
24 6 -0.6496 -6.1461 -0.4169
25 6 0.0330 -4.9509 -0.5075
26 1 -0.4851 0.8400 -0.0004
27 1 2.9401 -3.6096 -0.0647
28 1 2.7976 -5.7765 1.2685
29 1 1.5725 -7.9024 1.4367
30 1 -2.3129 -10.4853 0.8330
31 1 -3.3769 -10.9572 3.0442
32 1 -1.6142 -6.2541 -0.8906
33 1 -0.3969 -4.1231 -1.0518
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186372514.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:19:02
Heat of formation + Delta-G solvation = -2.070878 kcal
Electronic energy + Delta-G solvation = -22604.042505 eV
Core-core repulsion = 18849.391044 eV
Total energy + Delta-G solvation = -3754.651461 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.051 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.60346 -41.17162 -40.16340 -38.29003 -37.85889 -35.24412 -34.53393 -34.34055
-32.67812 -31.98173 -30.27980 -28.30617 -26.11741 -25.52488 -24.05613 -23.53931
-21.87326 -20.30375 -19.55653 -18.97985 -18.33442 -18.04914 -17.75123 -17.26184
-16.77362 -16.22121 -15.83557 -15.44825 -15.29387 -14.98497 -14.68300 -14.62726
-14.44856 -14.10401 -13.74236 -13.42256 -13.14872 -12.94366 -12.88708 -12.77528
-12.70414 -12.54953 -12.08431 -12.02626 -11.40113 -11.10808 -10.86767 -10.72448
-10.25840 -10.05046 -9.77600 -8.80861 -8.39918 -7.03811 -0.43181 -0.36570
0.07686 0.41194 0.51758 1.39212 1.39828 1.56664 1.75852 2.20090
2.21437 2.36311 2.81858 2.90048 2.94968 3.23894 3.60848 3.64901
3.74641 3.90463 3.94190 4.13108 4.37772 4.48308 4.60372 4.65256
4.83121 4.98461 5.09896 5.20612 5.32918 5.46633 5.59225 5.86660
6.12696 6.15374 6.39522 6.72270 7.34257 7.36210 8.35885 8.54497
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.020440 B = 0.002649 C = 0.002469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1369.510193 B =10569.363815 C =11338.400930
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.801 5.801
2 C 0.031 3.969
3 Si 1.002 2.998
4 H -0.259 1.259
5 H -0.273 1.273
6 H -0.247 1.247
7 C -0.563 4.563
8 H 0.093 0.907
9 C 0.528 3.472
10 O -0.612 6.612
11 N -0.693 5.693
12 C 0.176 3.824
13 C -0.152 4.152
14 C -0.079 4.079
15 C 0.030 3.970
16 O -0.228 6.228
17 C 0.241 3.759
18 C -0.100 4.100
19 C -0.056 4.056
20 C 0.073 3.927
21 Cl 0.003 6.997
22 N -0.236 5.236
23 N -0.304 5.304
24 C -0.094 4.094
25 C -0.142 4.142
26 H 0.279 0.721
27 H 0.409 0.591
28 H 0.153 0.847
29 H 0.145 0.855
30 H 0.210 0.790
31 H 0.216 0.784
32 H 0.136 0.864
33 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.277 -21.976 4.043 22.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.429 5.429
2 C -0.188 4.188
3 Si 0.821 3.179
4 H -0.183 1.183
5 H -0.198 1.198
6 H -0.170 1.170
7 C -0.598 4.598
8 H 0.111 0.889
9 C 0.338 3.662
10 O -0.499 6.499
11 N -0.337 5.337
12 C 0.077 3.923
13 C -0.173 4.173
14 C -0.098 4.098
15 C -0.013 4.013
16 O -0.130 6.130
17 C 0.056 3.944
18 C -0.129 4.129
19 C -0.084 4.084
20 C -0.101 4.101
21 Cl 0.031 6.969
22 N -0.080 5.080
23 N -0.159 5.159
24 C -0.113 4.113
25 C -0.164 4.164
26 H 0.089 0.911
27 H 0.245 0.755
28 H 0.171 0.829
29 H 0.163 0.837
30 H 0.227 0.773
31 H 0.233 0.767
32 H 0.154 0.846
33 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -2.607 -20.570 4.508 21.219
hybrid contribution -0.073 0.014 -0.363 0.370
sum -2.680 -20.556 4.145 21.140
Atomic orbital electron populations
1.70164 1.09728 1.29537 1.33439 1.27050 0.95504 1.05240 0.90967
0.84947 0.78794 0.74560 0.79615 1.18327 1.19773 1.17041 1.20580
0.95638 0.90451 1.53096 0.88886 1.17452 0.87342 0.83745 0.77704
1.90614 1.15509 1.86988 1.56835 1.43759 1.10299 1.03749 1.75940
1.18331 0.93311 0.86950 0.93693 1.21004 1.02967 0.92288 1.01035
1.21108 0.93460 0.97712 0.97538 1.18393 0.92588 0.85350 1.04996
1.84654 1.63817 1.36275 1.28286 1.22345 0.91639 0.93186 0.87186
1.22081 0.94425 0.95532 1.00895 1.22608 0.97139 0.99814 0.88815
1.23774 0.99048 0.95581 0.91729 1.98424 1.79980 1.94667 1.23804
1.72672 1.05639 1.16278 1.13440 1.73278 1.20242 1.26495 0.95856
1.21019 0.99904 0.90444 0.99912 1.21123 0.96556 0.96799 1.01876
0.91072 0.75481 0.82929 0.83689 0.77335 0.76719 0.84622 0.86917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -47.74 11.73 21.85 0.26 -47.48 16
2 C 0.03 1.66 5.50 85.33 0.47 2.13 16
3 Si 1.00 39.46 29.56 68.60 2.03 41.49 16
4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16
5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16
6 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16
7 C -0.56 -30.91 9.31 23.59 0.22 -30.69 16
8 H 0.09 4.50 7.85 -2.91 -0.02 4.47 16
9 C 0.53 30.23 7.41 85.10 0.63 30.86 16
10 O -0.61 -40.18 12.30 -4.63 -0.06 -40.24 16
11 N -0.69 -31.74 5.31 -311.34 -1.65 -33.40 16
12 C 0.18 7.54 6.30 38.36 0.24 7.78 16
13 C -0.15 -5.21 9.97 22.41 0.22 -4.99 16
14 C -0.08 -2.51 9.46 22.36 0.21 -2.30 16
15 C 0.03 0.99 5.23 22.59 0.12 1.11 16
16 O -0.23 -6.38 9.98 -33.26 -0.33 -6.71 16
17 C 0.24 6.20 7.48 84.88 0.63 6.84 16
18 C -0.10 -1.47 10.16 22.62 0.23 -1.24 16
19 C -0.06 -0.69 9.99 22.52 0.23 -0.47 16
20 C 0.07 1.54 7.37 84.84 0.62 2.16 16
21 Cl 0.00 0.06 29.13 -2.72 -0.08 -0.02 16
22 N -0.24 -7.13 11.48 -49.83 -0.57 -7.71 16
23 N -0.30 -9.85 10.18 -170.20 -1.73 -11.58 16
24 C -0.09 -3.53 9.98 22.36 0.22 -3.31 16
25 C -0.14 -6.42 8.68 22.41 0.19 -6.22 16
26 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16
27 H 0.41 15.50 8.78 -92.71 -0.81 14.68 16
28 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16
29 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16
30 H 0.21 1.23 8.06 -2.91 -0.02 1.20 16
31 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16
32 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16
33 H 0.11 5.95 6.22 -2.91 -0.02 5.93 16
Total: -1.00 -79.89 319.25 2.49 -77.41
By element:
Atomic # 1 Polarization: 26.19 SS G_CDS: 0.38 Total: 26.57 kcal
Atomic # 6 Polarization: -2.57 SS G_CDS: 4.25 Total: 1.67 kcal
Atomic # 7 Polarization: -96.46 SS G_CDS: -3.70 Total: -100.16 kcal
Atomic # 8 Polarization: -46.57 SS G_CDS: -0.39 Total: -46.96 kcal
Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal
Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal
Total: -79.89 2.49 -77.41 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186372514.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.337 kcal
(2) G-P(sol) polarization free energy of solvation -79.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds