Wall clock time and date at job start Tue Mar 31 2020 12:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48496 * 109.46904 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46946 * 299.99722 * 3 2 1 6 6 H 1.48496 * 109.46959 * 59.99758 * 3 2 1 7 7 C 1.37874 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99893 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00014 * 180.02562 * 11 10 9 14 14 C 1.40100 * 119.99941 * 184.62525 * 13 11 10 15 15 C 1.38858 * 120.01336 * 144.91264 * 14 13 11 16 16 C 1.38092 * 120.00895 * 180.25098 * 15 14 13 17 17 C 1.38699 * 120.02822 * 359.45155 * 16 15 14 18 18 O 1.35990 * 119.99219 * 180.25500 * 17 16 15 19 19 C 1.42896 * 116.99982 * 0.29058 * 18 17 16 20 20 F 1.39893 * 109.47444 * 300.00083 * 19 18 17 21 21 F 1.39906 * 109.47064 * 60.00546 * 19 18 17 22 22 C 1.38815 * 120.01695 * 0.54719 * 17 16 15 23 23 Cl 1.73599 * 120.00265 * 179.70578 * 22 17 16 24 24 C 1.38197 * 119.99592 * 359.72532 * 22 17 16 25 25 H 0.97006 * 119.99888 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.47233 * 59.99838 * 9 7 2 27 27 H 1.09000 * 109.47182 * 300.00210 * 9 7 2 28 28 H 1.09010 * 109.46803 * 59.99916 * 10 9 7 29 29 H 1.09000 * 109.47425 * 300.00403 * 10 9 7 30 30 H 0.97005 * 119.99642 * 4.62303 * 13 11 10 31 31 H 1.08008 * 119.99694 * 359.97438 * 15 14 13 32 32 H 1.08007 * 119.99154 * 179.70056 * 16 15 14 33 33 H 1.09004 * 109.47272 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.01476 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 1.4685 -7.3457 -0.0954 15 6 2.0218 -8.4115 -0.7926 16 6 1.3324 -9.6038 -0.8928 17 6 0.0920 -9.7412 -0.2876 18 8 -0.5841 -10.9174 -0.3824 19 6 0.0457 -11.9704 -1.1148 20 9 0.2648 -11.5556 -2.4328 21 9 1.2697 -12.2876 -0.5161 22 6 -0.4623 -8.6765 0.4096 23 17 -2.0183 -8.8465 1.1605 24 6 0.2244 -7.4811 0.5057 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1333 -6.1356 0.0696 31 1 2.9897 -8.3065 -1.2604 32 1 1.7609 -10.4310 -1.4393 33 1 -0.5981 -12.8500 -1.1127 34 1 -0.2063 -6.6528 1.0484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291045759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:03 Heat of formation + Delta-G solvation = -166.750991 kcal Electronic energy + Delta-G solvation = -23499.909574 eV Core-core repulsion = 19287.427861 eV Total energy + Delta-G solvation = -4212.481713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.73052 -47.71490 -40.67087 -39.50437 -37.56499 -36.54368 -34.27679 -33.56099 -31.25711 -31.01791 -29.31560 -26.57627 -25.58860 -23.46067 -22.88312 -21.47835 -19.95826 -19.40961 -18.47860 -18.28813 -17.75627 -16.96510 -16.44961 -15.86304 -15.54101 -15.02931 -14.89411 -14.79728 -14.47010 -14.37127 -14.04789 -13.97959 -13.76939 -13.38822 -13.23768 -12.87959 -12.44359 -12.41804 -12.21866 -11.77835 -11.53576 -11.24205 -11.00083 -10.98185 -10.62705 -10.07080 -10.02105 -9.76525 -9.35188 -9.13228 -8.98484 -8.37572 -8.01921 -6.00811 -4.05703 0.88222 1.00412 1.98808 2.19205 2.88799 3.06787 3.19211 3.30049 3.37629 3.40443 3.45964 3.90165 4.24729 4.43537 4.48696 4.57401 4.91331 5.14556 5.23670 5.34530 5.41948 5.58191 5.81046 6.00522 6.08105 6.08480 6.21273 6.43776 6.75893 6.80853 7.53821 7.68517 7.77249 8.00196 8.29585 8.48152 9.02309 9.58430 11.10049 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.002534 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.393840 B =11044.910551 C =11719.330242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.509 3.491 12 O -0.510 6.510 13 N -0.684 5.684 14 C 0.149 3.851 15 C -0.110 4.110 16 C -0.160 4.160 17 C 0.088 3.912 18 O -0.311 6.311 19 C 0.411 3.589 20 F -0.198 7.198 21 F -0.199 7.199 22 C -0.030 4.030 23 Cl -0.050 7.050 24 C -0.085 4.085 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.412 0.588 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.182 0.818 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -26.535 -1.072 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.299 3.701 12 O -0.383 6.383 13 N -0.331 5.331 14 C 0.054 3.946 15 C -0.131 4.131 16 C -0.179 4.179 17 C 0.043 3.957 18 O -0.228 6.228 19 C 0.321 3.679 20 F -0.180 7.180 21 F -0.181 7.181 22 C -0.058 4.058 23 Cl -0.021 7.021 24 C -0.106 4.106 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.248 0.752 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.199 0.801 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.115 -26.365 -0.956 26.467 hybrid contribution 1.095 0.804 -0.169 1.369 sum 3.210 -25.561 -1.125 25.786 Atomic orbital electron populations 1.70006 1.06060 1.26585 1.50027 1.25027 0.94834 0.99293 0.95213 0.86526 0.79980 0.83772 0.77629 1.19738 1.20988 1.20986 1.21217 0.92971 0.90879 1.51603 0.92482 1.18935 0.93140 0.89301 0.98812 1.21921 1.00862 0.90975 1.02997 1.21943 0.88902 0.85406 0.73860 1.90686 1.14337 1.87036 1.46269 1.43960 1.10796 1.03837 1.74460 1.17655 0.93306 0.86798 0.96876 1.20817 1.01348 0.92202 0.98715 1.21213 0.93845 0.99936 1.02893 1.18399 0.92332 0.85072 0.99870 1.86694 1.45483 1.20338 1.70331 1.23386 0.81375 0.90306 0.72841 1.93106 1.95233 1.91597 1.38050 1.93101 1.48544 1.92887 1.83575 1.19955 0.90315 0.93346 1.02183 1.98374 1.25507 1.97803 1.80383 1.21189 0.94407 0.95937 0.99022 0.92926 0.95678 0.95647 0.89684 0.89676 0.75183 0.84373 0.83955 0.80137 0.81948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.92 4.26 -27.89 -0.12 0.80 16 10 C -0.13 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 9.09 7.67 -10.98 -0.08 9.00 16 12 O -0.51 -11.19 13.42 5.55 0.07 -11.12 16 13 N -0.68 -9.02 5.34 -9.83 -0.05 -9.07 16 14 C 0.15 2.02 6.30 -83.63 -0.53 1.49 16 15 C -0.11 -1.21 9.96 -39.41 -0.39 -1.60 16 16 C -0.16 -1.77 8.25 -39.46 -0.33 -2.09 16 17 C 0.09 1.08 6.48 -39.20 -0.25 0.83 16 18 O -0.31 -3.23 9.89 -19.71 -0.19 -3.42 16 19 C 0.41 2.79 5.98 101.05 0.60 3.39 16 20 F -0.20 -1.68 15.56 2.25 0.04 -1.64 16 21 F -0.20 -1.59 15.60 2.25 0.04 -1.55 16 22 C -0.03 -0.42 6.33 -39.38 -0.25 -0.67 16 23 Cl -0.05 -0.67 28.50 -51.86 -1.48 -2.15 16 24 C -0.08 -1.28 8.48 -39.38 -0.33 -1.61 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 27 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.41 3.85 8.82 -40.82 -0.36 3.49 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.14 1.36 5.09 -52.48 -0.27 1.09 16 33 H 0.18 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.16 2.79 6.22 -52.49 -0.33 2.47 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -34.19 321.23 -6.30 -40.49 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.03 Total: -0.12 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.25 Total: -6.33 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.68 Total: -35.30 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.12 Total: -14.53 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.19 -6.30 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291045759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.262 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds