Wall clock time and date at job start Tue Mar 31 2020 12:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48496 * 109.46904 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46946 * 299.99722 * 3 2 1 6 6 H 1.48496 * 109.46959 * 59.99758 * 3 2 1 7 7 C 1.37874 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99893 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00014 * 180.02562 * 11 10 9 14 14 C 1.40100 * 119.99941 * 184.62525 * 13 11 10 15 15 C 1.38858 * 120.01336 * 144.91264 * 14 13 11 16 16 C 1.38092 * 120.00895 * 180.25098 * 15 14 13 17 17 C 1.38699 * 120.02822 * 359.45155 * 16 15 14 18 18 O 1.35990 * 119.99219 * 180.25500 * 17 16 15 19 19 C 1.42896 * 116.99982 * 0.29058 * 18 17 16 20 20 F 1.39893 * 109.47444 * 300.00083 * 19 18 17 21 21 F 1.39906 * 109.47064 * 60.00546 * 19 18 17 22 22 C 1.38815 * 120.01695 * 0.54719 * 17 16 15 23 23 Cl 1.73599 * 120.00265 * 179.70578 * 22 17 16 24 24 C 1.38197 * 119.99592 * 359.72532 * 22 17 16 25 25 H 0.97006 * 119.99888 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.47233 * 59.99838 * 9 7 2 27 27 H 1.09000 * 109.47182 * 300.00210 * 9 7 2 28 28 H 1.09010 * 109.46803 * 59.99916 * 10 9 7 29 29 H 1.09000 * 109.47425 * 300.00403 * 10 9 7 30 30 H 0.97005 * 119.99642 * 4.62303 * 13 11 10 31 31 H 1.08008 * 119.99694 * 359.97438 * 15 14 13 32 32 H 1.08007 * 119.99154 * 179.70056 * 16 15 14 33 33 H 1.09004 * 109.47272 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.01476 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1656 -6.1344 0.0018 14 6 1.4685 -7.3457 -0.0954 15 6 2.0218 -8.4115 -0.7926 16 6 1.3324 -9.6038 -0.8928 17 6 0.0920 -9.7412 -0.2876 18 8 -0.5841 -10.9174 -0.3824 19 6 0.0457 -11.9704 -1.1148 20 9 0.2648 -11.5556 -2.4328 21 9 1.2697 -12.2876 -0.5161 22 6 -0.4623 -8.6765 0.4096 23 17 -2.0183 -8.8465 1.1605 24 6 0.2244 -7.4811 0.5057 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1333 -6.1356 0.0696 31 1 2.9897 -8.3065 -1.2604 32 1 1.7609 -10.4310 -1.4393 33 1 -0.5981 -12.8500 -1.1127 34 1 -0.2063 -6.6528 1.0484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291045759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:03 Heat of formation + Delta-G solvation = -189.848229 kcal Electronic energy + Delta-G solvation = -23500.911145 eV Core-core repulsion = 19287.427861 eV Total energy + Delta-G solvation = -4213.483284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.057 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.31378 -48.30139 -41.77248 -40.60824 -38.59554 -37.59965 -35.60648 -35.45368 -33.07339 -32.04641 -30.43893 -27.87507 -26.85243 -24.51636 -24.20579 -22.90132 -21.36232 -20.18772 -19.27549 -18.97401 -18.88945 -18.57416 -17.52953 -17.23309 -16.78132 -16.47316 -15.96186 -15.89415 -15.85351 -15.10366 -15.02156 -14.87342 -14.65122 -14.59426 -14.28479 -14.18835 -14.02452 -13.65548 -13.24663 -13.06102 -12.89923 -12.81111 -12.48641 -12.44245 -12.03975 -11.92216 -11.64220 -11.28139 -11.15060 -10.80304 -10.56702 -10.03633 -9.05290 -8.17630 -6.31220 -0.10166 -0.01076 0.97394 1.43387 1.44254 1.50106 1.55602 1.57472 2.01766 2.42550 2.44727 2.52533 3.16153 3.44971 3.56661 3.69855 3.79074 3.88268 4.02383 4.16732 4.40236 4.51340 4.55339 4.55988 4.89030 4.99421 5.10951 5.13374 5.47102 5.52469 5.63666 5.79821 5.86460 6.17576 6.42308 6.87687 7.17289 7.39265 8.95096 Molecular weight = 319.06amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.002534 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.393840 B =11044.910551 C =11719.330242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.115 4.115 11 C 0.512 3.488 12 O -0.562 6.562 13 N -0.658 5.658 14 C 0.129 3.871 15 C -0.089 4.089 16 C -0.159 4.159 17 C 0.093 3.907 18 O -0.321 6.321 19 C 0.406 3.594 20 F -0.207 7.207 21 F -0.205 7.205 22 C -0.050 4.050 23 Cl -0.056 7.056 24 C -0.104 4.104 25 H 0.262 0.738 26 H -0.017 1.017 27 H -0.016 1.016 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.434 0.566 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.236 0.764 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -28.124 -1.925 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.155 4.155 11 C 0.302 3.698 12 O -0.439 6.439 13 N -0.306 5.306 14 C 0.033 3.967 15 C -0.109 4.109 16 C -0.178 4.178 17 C 0.048 3.952 18 O -0.239 6.239 19 C 0.317 3.683 20 F -0.189 7.189 21 F -0.186 7.186 22 C -0.078 4.078 23 Cl -0.027 7.027 24 C -0.125 4.125 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.274 0.726 31 H 0.194 0.806 32 H 0.181 0.819 33 H 0.251 0.749 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.211 -28.009 -1.808 28.547 hybrid contribution 0.127 1.129 0.075 1.139 sum 5.338 -26.880 -1.733 27.460 Atomic orbital electron populations 1.70186 1.08305 1.27686 1.51638 1.26125 0.95687 1.03935 0.94771 0.85296 0.79422 0.78246 0.77419 1.17438 1.20813 1.20831 1.21742 0.94095 0.91489 1.50454 0.90351 1.18720 0.93769 0.92423 0.94897 1.21664 0.99309 0.88861 1.05633 1.21684 0.88091 0.86486 0.73546 1.90688 1.16518 1.87794 1.48949 1.43484 1.11655 1.02518 1.72930 1.17768 0.93205 0.87397 0.98288 1.21159 1.02281 0.90722 0.96699 1.21522 0.93237 1.00591 1.02437 1.18523 0.92577 0.85402 0.98680 1.86708 1.46125 1.20201 1.70851 1.24297 0.81848 0.90406 0.71701 1.93088 1.95317 1.91757 1.38724 1.93088 1.49174 1.92737 1.83645 1.20017 0.90413 0.93896 1.03493 1.98359 1.25944 1.97800 1.80604 1.21035 0.95661 0.95719 1.00069 0.92936 0.99846 0.99747 0.86925 0.86920 0.72587 0.80554 0.81882 0.74875 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.29 21.45 0.28 -58.76 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.12 4.26 29.85 0.13 2.25 16 10 C -0.12 -4.24 5.64 29.85 0.17 -4.08 16 11 C 0.51 18.44 7.67 87.66 0.67 19.11 16 12 O -0.56 -26.17 13.42 -3.05 -0.04 -26.21 16 13 N -0.66 -16.40 5.34 -303.40 -1.62 -18.02 16 14 C 0.13 3.34 6.30 38.11 0.24 3.58 16 15 C -0.09 -1.68 9.96 22.38 0.22 -1.46 16 16 C -0.16 -3.10 8.25 22.35 0.18 -2.91 16 17 C 0.09 2.19 6.48 22.52 0.15 2.33 16 18 O -0.32 -6.08 9.89 -93.44 -0.92 -7.01 16 19 C 0.41 4.29 5.98 113.37 0.68 4.97 16 20 F -0.21 -2.93 15.56 44.97 0.70 -2.23 16 21 F -0.20 -2.64 15.60 44.97 0.70 -1.94 16 22 C -0.05 -1.43 6.33 22.40 0.14 -1.29 16 23 Cl -0.06 -1.56 28.50 -2.72 -0.08 -1.64 16 24 C -0.10 -3.25 8.48 22.40 0.19 -3.06 16 25 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 26 H -0.02 -1.04 8.10 -2.38 -0.02 -1.05 16 27 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 28 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 29 H 0.11 3.54 8.14 -2.39 -0.02 3.53 16 30 H 0.43 6.73 8.82 -92.70 -0.82 5.91 16 31 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.16 2.52 5.09 -2.91 -0.01 2.50 16 33 H 0.24 -0.10 8.14 -2.38 -0.02 -0.12 16 34 H 0.13 4.94 6.22 -2.91 -0.02 4.93 16 Total: -1.00 -79.63 321.23 4.87 -74.76 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.36 Total: 5.46 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 3.47 Total: -10.16 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.34 Total: -76.78 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.96 Total: -33.21 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.40 Total: -4.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -79.63 4.87 -74.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291045759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.091 kcal (2) G-P(sol) polarization free energy of solvation -79.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds