Wall clock time and date at job start Tue Mar 31 2020 12:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86800 * 119.99438 * 2 1 4 4 H 1.48495 * 109.47373 * 274.97921 * 3 2 1 5 5 H 1.48502 * 109.47422 * 34.98485 * 3 2 1 6 6 H 1.48500 * 109.46544 * 154.98256 * 3 2 1 7 7 C 1.40225 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99830 * 198.88891 * 7 2 1 9 9 C 1.41088 * 119.99772 * 18.88802 * 7 2 1 10 10 C 1.40905 * 120.10202 * 24.78884 * 9 7 2 11 11 C 1.36304 * 119.88959 * 180.24922 * 10 9 7 12 12 C 1.40040 * 120.10639 * 359.47602 * 11 10 9 13 13 C 1.47590 * 119.89313 * 180.27215 * 12 11 10 14 14 O 1.21605 * 120.00417 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99634 * 179.97438 * 13 12 11 16 16 C 1.39956 * 120.00130 * 175.12266 * 15 13 12 17 17 C 1.38872 * 120.05340 * 29.02449 * 16 15 13 18 18 C 1.38110 * 119.96300 * 179.67687 * 17 16 15 19 19 C 1.38494 * 120.07003 * 0.61994 * 18 17 16 20 20 F 1.35098 * 119.94707 * 179.69451 * 19 18 17 21 21 C 1.38457 * 120.10526 * 359.68408 * 19 18 17 22 22 C 1.38217 * 120.03744 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03493 * 180.02562 * 22 21 19 24 24 C 1.40028 * 120.20687 * 0.25478 * 12 11 10 25 25 C 1.36308 * 120.10506 * 0.02562 * 24 12 11 26 26 H 0.96996 * 120.00467 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05533 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.94639 * 179.74888 * 11 10 9 29 29 H 0.96996 * 120.00379 * 355.12067 * 15 13 12 30 30 H 1.08002 * 120.01866 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.96305 * 180.32370 * 18 17 16 32 32 H 1.08006 * 119.97830 * 180.02562 * 21 19 18 33 33 H 1.07996 * 119.95227 * 180.02562 * 24 12 11 34 34 H 1.08001 * 120.05058 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3826 2.1073 -1.3947 5 1 1.4944 2.6200 0.8027 6 1 3.5865 1.4121 0.5921 7 6 2.0077 -1.2143 0.0005 8 1 3.0440 -1.2393 0.3034 9 6 1.3592 -2.4035 -0.3945 10 6 0.2451 -2.3485 -1.2553 11 6 -0.3812 -3.4996 -1.6301 12 6 0.0876 -4.7363 -1.1699 13 6 -0.5905 -5.9803 -1.5835 14 8 -1.5544 -5.9303 -2.3232 15 7 -0.1407 -7.1716 -1.1422 16 6 -0.8427 -8.3425 -1.4503 17 6 -1.5856 -8.4203 -2.6211 18 6 -2.2723 -9.5790 -2.9266 19 6 -2.2313 -10.6588 -2.0603 20 9 -2.9089 -11.7888 -2.3586 21 6 -1.4967 -10.5822 -0.8892 22 6 -0.8021 -9.4272 -0.5825 23 17 0.1195 -9.3314 0.8856 24 6 1.1979 -4.7964 -0.3188 25 6 1.8272 -3.6501 0.0660 26 1 -0.4851 0.8400 0.0004 27 1 -0.1143 -1.3955 -1.6147 28 1 -1.2378 -3.4582 -2.2867 29 1 0.6696 -7.2177 -0.6110 30 1 -1.6217 -7.5772 -3.2951 31 1 -2.8457 -9.6414 -3.8396 32 1 -1.4658 -11.4256 -0.2153 33 1 1.5563 -5.7523 0.0334 34 1 2.6838 -3.6975 0.7222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334808123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:02 Heat of formation + Delta-G solvation = -46.659736 kcal Electronic energy + Delta-G solvation = -22507.847486 eV Core-core repulsion = 18731.342545 eV Total energy + Delta-G solvation = -3776.504941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.97382 -40.36784 -38.47683 -37.20944 -36.56294 -34.44381 -34.01457 -31.08549 -30.53039 -29.81118 -28.78663 -26.01512 -23.58380 -22.95193 -21.88670 -20.93854 -19.88300 -18.23773 -17.72143 -17.53684 -16.92250 -16.15629 -15.71402 -15.44474 -14.95295 -14.60336 -14.43608 -14.13015 -13.90198 -13.68774 -13.32982 -13.19687 -13.03978 -12.81246 -12.32853 -12.03184 -11.62611 -11.57724 -11.40502 -11.33947 -11.19377 -11.06348 -10.77003 -10.23526 -10.16118 -9.66226 -9.45784 -9.24686 -9.01160 -8.04449 -7.83417 -7.68956 -7.15699 -4.72942 0.85083 1.00881 1.88528 2.04872 2.82145 2.88959 2.92483 2.93197 3.26488 3.33438 3.65455 3.72459 4.18740 4.41377 4.56513 4.78402 5.08881 5.18494 5.43456 5.47781 5.72192 5.82019 5.84314 6.06351 6.15675 6.17911 6.41991 6.68067 6.72289 6.85452 6.91985 6.95994 7.30244 7.46937 7.53703 7.73510 7.88371 7.95404 8.29633 8.49599 8.61318 8.68856 9.76133 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002701 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.960311 B =10365.528005 C =11103.029939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.435 4.435 8 H 0.087 0.913 9 C 0.130 3.870 10 C -0.183 4.183 11 C -0.030 4.030 12 C -0.291 4.291 13 C 0.572 3.428 14 O -0.551 6.551 15 N -0.676 5.676 16 C 0.173 3.827 17 C -0.097 4.097 18 C -0.125 4.125 19 C 0.076 3.924 20 F -0.139 7.139 21 C -0.125 4.125 22 C -0.055 4.055 23 Cl -0.055 7.055 24 C -0.045 4.045 25 C -0.232 4.232 26 H 0.289 0.711 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.412 0.588 30 H 0.171 0.829 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -12.647 -1.217 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.462 4.462 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.203 4.203 11 C -0.049 4.049 12 C -0.296 4.296 13 C 0.371 3.629 14 O -0.432 6.432 15 N -0.320 5.320 16 C 0.074 3.926 17 C -0.117 4.117 18 C -0.145 4.145 19 C 0.056 3.944 20 F -0.118 7.118 21 C -0.145 4.145 22 C -0.085 4.085 23 Cl -0.026 7.026 24 C -0.065 4.065 25 C -0.252 4.252 26 H 0.101 0.899 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.250 0.750 30 H 0.188 0.812 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.906 -12.369 -1.556 12.500 hybrid contribution 0.647 0.416 0.604 0.978 sum -0.258 -11.953 -0.952 11.994 Atomic orbital electron populations 1.69744 1.08011 1.30456 1.30161 1.26155 0.94834 1.02108 0.91886 0.86166 0.80667 0.79709 0.79624 1.18848 1.19854 1.18144 1.19927 0.98824 0.91313 1.36161 0.89458 1.17813 0.90272 0.92122 0.87161 1.20985 1.00238 0.97045 1.01993 1.20445 0.96922 0.91303 0.96260 1.18682 1.04858 0.91060 1.14956 1.18801 0.82695 0.82787 0.78630 1.90586 1.28578 1.86807 1.37206 1.43739 1.28396 1.04506 1.55400 1.17693 0.95886 0.86214 0.92791 1.21553 0.96196 0.98477 0.95491 1.21213 1.01119 0.91919 1.00214 1.17379 0.97380 0.83831 0.95828 1.91492 1.78030 1.49031 1.93219 1.20679 0.98400 0.98048 0.97334 1.20389 1.02000 0.96037 0.90066 1.98376 1.72207 1.98290 1.33771 1.20358 0.94174 0.96666 0.95255 1.20670 1.04582 0.92619 1.07311 0.89916 0.86167 0.87969 0.75000 0.81219 0.83987 0.83689 0.89310 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.82 11.03 55.56 0.61 -17.21 16 2 C 0.07 1.64 5.11 -17.31 -0.09 1.55 16 3 Si 0.92 16.62 29.60 -169.99 -5.03 11.59 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.44 -10.31 9.04 -37.76 -0.34 -10.66 16 8 H 0.09 1.96 7.92 -52.49 -0.42 1.54 16 9 C 0.13 3.14 5.57 -106.80 -0.59 2.55 16 10 C -0.18 -4.45 8.64 -39.27 -0.34 -4.79 16 11 C -0.03 -0.69 9.52 -39.60 -0.38 -1.07 16 12 C -0.29 -6.25 5.89 -104.74 -0.62 -6.87 16 13 C 0.57 11.31 7.64 -12.45 -0.10 11.22 16 14 O -0.55 -11.79 13.39 5.27 0.07 -11.72 16 15 N -0.68 -10.98 5.08 -10.74 -0.05 -11.04 16 16 C 0.17 2.58 6.40 -83.64 -0.54 2.05 16 17 C -0.10 -1.40 8.76 -39.39 -0.34 -1.75 16 18 C -0.13 -1.52 10.02 -39.53 -0.40 -1.92 16 19 C 0.08 0.92 7.30 -39.41 -0.29 0.63 16 20 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 21 C -0.12 -1.46 9.80 -39.51 -0.39 -1.84 16 22 C -0.05 -0.72 6.34 -39.32 -0.25 -0.97 16 23 Cl -0.06 -0.67 27.85 -51.86 -1.44 -2.11 16 24 C -0.05 -0.92 9.47 -39.61 -0.37 -1.29 16 25 C -0.23 -5.11 9.73 -39.27 -0.38 -5.49 16 26 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 27 H 0.12 2.98 6.21 -52.49 -0.33 2.66 16 28 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 29 H 0.41 6.01 5.91 -40.82 -0.24 5.77 16 30 H 0.17 2.71 5.74 -52.49 -0.30 2.41 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.09 1.48 6.38 -52.49 -0.34 1.14 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -25.50 317.00 -8.86 -34.37 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -2.42 Total: 11.60 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -5.41 Total: -18.64 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: 0.56 Total: -28.24 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.44 Total: -2.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.50 -8.86 -34.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334808123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.292 kcal (2) G-P(sol) polarization free energy of solvation -25.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds