Wall clock time and date at job start Tue Mar 31 2020 12:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86800 * 119.99438 * 2 1 4 4 H 1.48495 * 109.47373 * 274.97921 * 3 2 1 5 5 H 1.48502 * 109.47422 * 34.98485 * 3 2 1 6 6 H 1.48500 * 109.46544 * 154.98256 * 3 2 1 7 7 C 1.40225 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99830 * 198.88891 * 7 2 1 9 9 C 1.41088 * 119.99772 * 18.88802 * 7 2 1 10 10 C 1.40905 * 120.10202 * 24.78884 * 9 7 2 11 11 C 1.36304 * 119.88959 * 180.24922 * 10 9 7 12 12 C 1.40040 * 120.10639 * 359.47602 * 11 10 9 13 13 C 1.47590 * 119.89313 * 180.27215 * 12 11 10 14 14 O 1.21605 * 120.00417 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99634 * 179.97438 * 13 12 11 16 16 C 1.39956 * 120.00130 * 175.12266 * 15 13 12 17 17 C 1.38872 * 120.05340 * 29.02449 * 16 15 13 18 18 C 1.38110 * 119.96300 * 179.67687 * 17 16 15 19 19 C 1.38494 * 120.07003 * 0.61994 * 18 17 16 20 20 F 1.35098 * 119.94707 * 179.69451 * 19 18 17 21 21 C 1.38457 * 120.10526 * 359.68408 * 19 18 17 22 22 C 1.38217 * 120.03744 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03493 * 180.02562 * 22 21 19 24 24 C 1.40028 * 120.20687 * 0.25478 * 12 11 10 25 25 C 1.36308 * 120.10506 * 0.02562 * 24 12 11 26 26 H 0.96996 * 120.00467 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.05533 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.94639 * 179.74888 * 11 10 9 29 29 H 0.96996 * 120.00379 * 355.12067 * 15 13 12 30 30 H 1.08002 * 120.01866 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.96305 * 180.32370 * 18 17 16 32 32 H 1.08006 * 119.97830 * 180.02562 * 21 19 18 33 33 H 1.07996 * 119.95227 * 180.02562 * 24 12 11 34 34 H 1.08001 * 120.05058 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3826 2.1073 -1.3947 5 1 1.4944 2.6200 0.8027 6 1 3.5865 1.4121 0.5921 7 6 2.0077 -1.2143 0.0005 8 1 3.0440 -1.2393 0.3034 9 6 1.3592 -2.4035 -0.3945 10 6 0.2451 -2.3485 -1.2553 11 6 -0.3812 -3.4996 -1.6301 12 6 0.0876 -4.7363 -1.1699 13 6 -0.5905 -5.9803 -1.5835 14 8 -1.5544 -5.9303 -2.3232 15 7 -0.1407 -7.1716 -1.1422 16 6 -0.8427 -8.3425 -1.4503 17 6 -1.5856 -8.4203 -2.6211 18 6 -2.2723 -9.5790 -2.9266 19 6 -2.2313 -10.6588 -2.0603 20 9 -2.9089 -11.7888 -2.3586 21 6 -1.4967 -10.5822 -0.8892 22 6 -0.8021 -9.4272 -0.5825 23 17 0.1195 -9.3314 0.8856 24 6 1.1979 -4.7964 -0.3188 25 6 1.8272 -3.6501 0.0660 26 1 -0.4851 0.8400 0.0004 27 1 -0.1143 -1.3955 -1.6147 28 1 -1.2378 -3.4582 -2.2867 29 1 0.6696 -7.2177 -0.6110 30 1 -1.6217 -7.5772 -3.2951 31 1 -2.8457 -9.6414 -3.8396 32 1 -1.4658 -11.4256 -0.2153 33 1 1.5563 -5.7523 0.0334 34 1 2.6838 -3.6975 0.7222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334808123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:01 Heat of formation + Delta-G solvation = -57.594812 kcal Electronic energy + Delta-G solvation = -22508.321666 eV Core-core repulsion = 18731.342545 eV Total energy + Delta-G solvation = -3776.979121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.94260 -41.69929 -39.84671 -38.80125 -37.56812 -35.86495 -35.65333 -32.26311 -32.00702 -31.51561 -30.09716 -27.66852 -24.78224 -24.19004 -23.36998 -22.57045 -21.39184 -19.56156 -19.27601 -18.71751 -18.26925 -17.38578 -17.03689 -16.68145 -16.22514 -15.91946 -15.79963 -15.75035 -15.16223 -14.93348 -14.66836 -14.49124 -14.33549 -14.14461 -13.91865 -13.68673 -13.25938 -12.86852 -12.74857 -12.58288 -12.44784 -12.36116 -12.18578 -11.77478 -11.48291 -11.37233 -11.15067 -10.73900 -10.07309 -9.60684 -9.53777 -9.10997 -8.83472 -6.51319 -0.22511 -0.02719 0.41818 0.87348 1.13942 1.37362 1.41945 1.53794 1.95893 1.99108 2.14556 2.39459 2.74377 3.18582 3.55708 3.65946 3.82663 3.98455 4.06991 4.26910 4.29402 4.39563 4.54882 4.83329 4.93261 4.95533 5.01385 5.08378 5.17118 5.21838 5.30993 5.55825 5.71494 5.74599 5.88794 5.98375 6.17012 6.40825 6.52854 6.73272 6.85378 7.16790 8.11636 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.029845 B = 0.002701 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.960311 B =10365.528005 C =11103.029939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.465 4.465 8 H 0.094 0.906 9 C 0.103 3.897 10 C -0.203 4.203 11 C -0.041 4.041 12 C -0.298 4.298 13 C 0.576 3.424 14 O -0.572 6.572 15 N -0.664 5.664 16 C 0.147 3.853 17 C -0.109 4.109 18 C -0.118 4.118 19 C 0.083 3.917 20 F -0.135 7.135 21 C -0.116 4.116 22 C -0.052 4.052 23 Cl -0.045 7.045 24 C -0.036 4.036 25 C -0.244 4.244 26 H 0.297 0.703 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.419 0.581 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.129 0.871 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -14.428 -0.542 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.492 4.492 8 H 0.112 0.888 9 C 0.100 3.900 10 C -0.223 4.223 11 C -0.061 4.061 12 C -0.302 4.302 13 C 0.373 3.627 14 O -0.454 6.454 15 N -0.309 5.309 16 C 0.050 3.950 17 C -0.129 4.129 18 C -0.138 4.138 19 C 0.062 3.938 20 F -0.113 7.113 21 C -0.136 4.136 22 C -0.082 4.082 23 Cl -0.016 7.016 24 C -0.055 4.055 25 C -0.264 4.264 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.259 0.741 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.146 0.854 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.308 -14.204 -0.871 14.234 hybrid contribution 0.371 0.734 0.368 0.901 sum 0.063 -13.470 -0.502 13.480 Atomic orbital electron populations 1.69790 1.09528 1.31775 1.30880 1.27017 0.95450 1.05209 0.90800 0.85085 0.79387 0.75176 0.79591 1.18647 1.19141 1.17442 1.20213 0.99329 0.92162 1.37482 0.88833 1.18160 0.90620 0.93598 0.87637 1.20920 1.01329 0.96775 1.03233 1.20529 0.96963 0.92045 0.96541 1.18943 1.05230 0.91343 1.14709 1.18508 0.82310 0.83380 0.78500 1.90585 1.29447 1.87338 1.38067 1.43399 1.28587 1.04002 1.54877 1.17837 0.97045 0.86248 0.93863 1.21416 0.97183 0.98879 0.95470 1.21367 1.00371 0.91036 1.00993 1.17422 0.96912 0.83711 0.95735 1.91513 1.77887 1.48753 1.93184 1.20939 0.97098 0.98167 0.97383 1.20397 1.01983 0.95687 0.90095 1.98384 1.71935 1.98274 1.32997 1.20667 0.92987 0.97940 0.93909 1.20923 1.05343 0.92398 1.07706 0.89180 0.87765 0.88403 0.74109 0.83090 0.81821 0.81139 0.85370 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.43 11.03 21.87 0.24 -38.19 16 2 C 0.03 1.59 5.11 85.35 0.44 2.03 16 3 Si 0.99 34.07 29.60 68.60 2.03 36.10 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.27 -8.82 7.11 99.48 0.71 -8.12 16 6 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 7 C -0.47 -22.49 9.04 23.45 0.21 -22.28 16 8 H 0.09 4.23 7.92 -2.91 -0.02 4.21 16 9 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 10 C -0.20 -10.31 8.64 22.47 0.19 -10.11 16 11 C -0.04 -1.98 9.52 22.26 0.21 -1.77 16 12 C -0.30 -12.84 5.89 -19.94 -0.12 -12.95 16 13 C 0.58 22.66 7.64 86.71 0.66 23.32 16 14 O -0.57 -24.80 13.39 -4.05 -0.05 -24.85 16 15 N -0.66 -20.75 5.08 -306.16 -1.55 -22.30 16 16 C 0.15 4.19 6.40 38.17 0.24 4.43 16 17 C -0.11 -3.05 8.76 22.39 0.20 -2.86 16 18 C -0.12 -2.64 10.02 22.30 0.22 -2.41 16 19 C 0.08 1.75 7.30 22.38 0.16 1.91 16 20 F -0.13 -2.79 17.26 44.97 0.78 -2.02 16 21 C -0.12 -2.34 9.80 22.32 0.22 -2.13 16 22 C -0.05 -1.23 6.34 22.44 0.14 -1.09 16 23 Cl -0.04 -0.97 27.85 -2.72 -0.08 -1.04 16 24 C -0.04 -1.43 9.47 22.25 0.21 -1.22 16 25 C -0.24 -10.69 9.73 22.47 0.22 -10.47 16 26 H 0.30 12.81 8.29 -92.71 -0.77 12.04 16 27 H 0.10 5.50 6.21 -2.91 -0.02 5.48 16 28 H 0.10 4.63 7.63 -2.91 -0.02 4.61 16 29 H 0.42 11.40 5.91 -92.71 -0.55 10.85 16 30 H 0.15 4.86 5.74 -2.91 -0.02 4.84 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.13 3.93 6.38 -2.91 -0.02 3.91 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -56.00 317.00 5.10 -50.90 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.64 Total: 31.98 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 3.10 Total: -30.58 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -1.31 Total: -60.49 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.10 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -56.00 5.10 -50.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334808123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.691 kcal (2) G-P(sol) polarization free energy of solvation -56.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds