Wall clock time and date at job start Tue Mar 31 2020 12:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46911 * 299.99857 * 3 2 1 6 6 H 1.48503 * 109.47217 * 59.99386 * 3 2 1 7 7 C 1.39932 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00587 * 167.77844 * 7 2 1 9 9 C 1.41440 * 119.99705 * 347.78165 * 7 2 1 10 10 C 1.40784 * 120.17787 * 152.03405 * 9 7 2 11 11 C 1.37719 * 120.04243 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.41210 * 359.73460 * 11 10 9 13 13 C 1.39888 * 120.35844 * 0.51919 * 12 11 10 14 14 C 1.47859 * 120.03026 * 179.76030 * 13 12 11 15 15 O 1.21557 * 120.00320 * 179.72582 * 14 13 12 16 16 N 1.34776 * 119.99330 * 359.45177 * 14 13 12 17 17 C 1.39908 * 119.99462 * 175.80301 * 16 14 13 18 18 C 1.38891 * 120.06383 * 28.18046 * 17 16 14 19 19 C 1.38116 * 119.98368 * 179.71851 * 18 17 16 20 20 C 1.38273 * 120.11879 * 0.55600 * 19 18 17 21 21 C 1.38473 * 120.12436 * 359.72086 * 20 19 18 22 22 F 1.35099 * 119.99497 * 179.97438 * 21 20 19 23 23 C 1.38441 * 120.01505 * 359.97438 * 21 20 19 24 24 Cl 1.73591 * 120.05981 * 179.97438 * 23 21 20 25 25 C 1.39051 * 119.94563 * 359.48801 * 13 12 11 26 26 H 0.96999 * 119.99946 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.98234 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.79211 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.81911 * 180.26043 * 12 11 10 30 30 H 0.96995 * 120.00699 * 355.80426 * 16 14 13 31 31 H 1.07996 * 120.00636 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.93843 * 180.24942 * 19 18 17 33 33 H 1.08003 * 119.93641 * 179.74163 * 20 19 18 34 34 H 1.08000 * 120.19980 * 180.23193 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3965 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0696 -1.2225 -0.1974 9 6 1.3249 -2.4227 0.2603 10 6 1.7989 -3.6328 -0.2809 11 6 1.1313 -4.8102 -0.0266 12 6 -0.0038 -4.8150 0.7646 13 6 -0.4927 -3.6217 1.3067 14 6 -1.7093 -3.6344 2.1469 15 8 -2.1309 -2.5979 2.6219 16 7 -2.3539 -4.7945 2.3816 17 6 -3.4530 -4.8213 3.2469 18 6 -4.2416 -3.6890 3.4053 19 6 -5.3296 -3.7191 4.2555 20 6 -5.6290 -4.8714 4.9588 21 6 -4.8426 -6.0012 4.8088 22 9 -5.1372 -7.1255 5.4975 23 6 -3.7545 -5.9790 3.9532 24 17 -2.7674 -7.3945 3.7648 25 6 0.1696 -2.4243 1.0595 26 1 -0.4850 0.8400 -0.0004 27 1 2.6862 -3.6378 -0.8967 28 1 1.4987 -5.7363 -0.4436 29 1 -0.5175 -5.7444 0.9613 30 1 -2.0560 -5.6108 1.9507 31 1 -4.0066 -2.7866 2.8606 32 1 -5.9448 -2.8395 4.3751 33 1 -6.4781 -4.8904 5.6260 34 1 -0.2021 -1.5012 1.4791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335994676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:29 Heat of formation + Delta-G solvation = -39.983574 kcal Electronic energy + Delta-G solvation = -22911.943845 eV Core-core repulsion = 19135.728405 eV Total energy + Delta-G solvation = -3776.215440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.052 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.06988 -40.47643 -38.50721 -37.13634 -36.62928 -34.64676 -33.77716 -30.82439 -30.51823 -29.60859 -29.07911 -25.46067 -23.94682 -23.05783 -21.97497 -21.06353 -19.80936 -18.37212 -17.91266 -16.83892 -16.69954 -16.05168 -15.85716 -15.49739 -15.21213 -14.81726 -14.60407 -14.36631 -14.07134 -13.41371 -13.30586 -13.04865 -12.87174 -12.70465 -12.38341 -11.82609 -11.79582 -11.64336 -11.26643 -11.18765 -11.10663 -10.85174 -10.58597 -10.44885 -10.10161 -9.81989 -9.35906 -9.25554 -8.79686 -8.24154 -7.77313 -7.61485 -6.85672 -4.53140 0.84322 0.98231 1.88342 1.99167 2.70183 3.03393 3.05260 3.08361 3.09389 3.31703 3.68430 3.86127 4.06776 4.53422 4.64208 4.73248 5.03427 5.17277 5.42184 5.46364 5.61086 5.85825 5.90225 6.04947 6.12829 6.23281 6.37195 6.57955 6.79446 6.84143 6.87592 7.10648 7.23396 7.45613 7.56785 7.70730 7.85655 8.04288 8.38512 8.48893 8.70056 8.72380 10.08706 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.003374 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.600680 B = 8296.004321 C = 9485.604012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.097 4.097 12 C -0.213 4.213 13 C -0.133 4.133 14 C 0.569 3.431 15 O -0.518 6.518 16 N -0.671 5.671 17 C 0.204 3.796 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.173 4.173 21 C 0.128 3.872 22 F -0.129 7.129 23 C -0.120 4.120 24 Cl -0.049 7.049 25 C -0.081 4.081 26 H 0.284 0.716 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.415 0.585 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -7.829 6.019 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.115 4.115 12 C -0.234 4.234 13 C -0.137 4.137 14 C 0.363 3.637 15 O -0.394 6.394 16 N -0.316 5.316 17 C 0.105 3.895 18 C -0.156 4.156 19 C -0.083 4.083 20 C -0.192 4.192 21 C 0.107 3.893 22 F -0.107 7.107 23 C -0.150 4.150 24 Cl -0.020 7.020 25 C -0.101 4.101 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.186 0.814 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.119 -7.064 6.294 13.140 hybrid contribution 0.490 -0.204 -0.157 0.554 sum -8.629 -7.269 6.137 12.843 Atomic orbital electron populations 1.69751 1.07476 1.29641 1.34675 1.25955 0.94883 1.01558 0.92286 0.86174 0.80746 0.80640 0.78703 1.18368 1.19859 1.19576 1.19635 0.96500 0.90349 1.42258 0.89965 1.17614 0.91345 0.92615 0.88915 1.21197 1.02777 0.93171 1.05114 1.20450 0.95653 0.96886 0.98553 1.20361 1.00815 0.94869 1.07313 1.19298 0.95659 0.95957 1.02758 1.19083 0.83600 0.81668 0.79383 1.90645 1.66544 1.31827 1.50404 1.43764 1.29007 1.13611 1.45211 1.17423 0.88412 0.92502 0.91123 1.21803 0.93470 0.99294 1.01013 1.21062 0.95908 0.97328 0.94006 1.21053 1.01770 0.92071 1.04355 1.17054 0.94830 0.83839 0.93568 1.91522 1.92649 1.49380 1.77158 1.20688 0.98550 0.91097 1.04690 1.98370 1.68956 1.38010 1.96689 1.21699 0.95920 0.95790 0.96686 0.90476 0.88327 0.88589 0.89198 0.74614 0.81447 0.84052 0.84046 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.99 10.86 55.55 0.60 -19.39 16 2 C 0.07 1.73 5.23 -17.35 -0.09 1.64 16 3 Si 0.91 18.12 29.58 -169.99 -5.03 13.09 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.55 9.06 -37.73 -0.34 -11.89 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 C 0.10 2.46 5.55 -106.87 -0.59 1.87 16 10 C -0.20 -4.58 9.78 -38.81 -0.38 -4.96 16 11 C -0.10 -1.97 10.01 -39.73 -0.40 -2.37 16 12 C -0.21 -4.28 9.54 -38.92 -0.37 -4.65 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C 0.57 11.62 7.65 -12.32 -0.09 11.52 16 15 O -0.52 -11.56 13.37 5.32 0.07 -11.49 16 16 N -0.67 -11.16 5.09 -10.69 -0.05 -11.21 16 17 C 0.20 3.13 6.41 -83.68 -0.54 2.59 16 18 C -0.14 -1.98 8.76 -39.38 -0.35 -2.32 16 19 C -0.06 -0.72 10.04 -39.61 -0.40 -1.12 16 20 C -0.17 -1.86 10.02 -39.48 -0.40 -2.25 16 21 C 0.13 1.63 7.27 -39.42 -0.29 1.34 16 22 F -0.13 -1.64 16.84 2.25 0.04 -1.60 16 23 C -0.12 -1.67 6.34 -39.25 -0.25 -1.92 16 24 Cl -0.05 -0.65 27.50 -51.86 -1.43 -2.07 16 25 C -0.08 -2.04 8.21 -38.44 -0.32 -2.35 16 26 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 27 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.09 1.50 6.39 -52.49 -0.34 1.17 16 30 H 0.41 6.20 5.90 -40.82 -0.24 5.96 16 31 H 0.17 2.77 5.69 -52.49 -0.30 2.47 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 34 H 0.14 3.73 5.79 -52.49 -0.30 3.42 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -26.91 316.47 -8.86 -35.76 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -2.42 Total: 10.60 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -5.41 Total: -18.46 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.55 Total: -30.61 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.43 Total: -2.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.91 -8.86 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335994676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.219 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds