Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76201 * 103.00014 * 2 1 4 4 C 1.38277 * 123.54090 * 0.18838 * 3 2 1 5 5 C 1.33482 * 115.09316 * 180.25288 * 4 3 2 6 6 S 1.70552 * 111.26252 * 359.76336 * 5 4 3 7 7 C 1.37677 * 123.54082 * 179.97438 * 3 2 1 8 8 C 1.41370 * 125.49163 * 0.04208 * 7 3 2 9 9 O 1.21824 * 119.99933 * 359.71299 * 8 7 3 10 10 N 1.34778 * 120.00059 * 179.71317 * 8 7 3 11 11 C 1.39070 * 119.99813 * 185.09228 * 10 8 7 12 12 C 1.39525 * 119.83851 * 214.21383 * 11 10 8 13 13 C 1.36355 * 120.16990 * 179.72686 * 12 11 10 14 14 C 1.40887 * 119.82652 * 0.54734 * 13 12 11 15 15 C 1.41135 * 120.15988 * 179.70454 * 14 13 12 16 16 H 1.07996 * 119.99772 * 205.38457 * 15 14 13 17 17 C 1.39892 * 119.99841 * 25.39072 * 15 14 13 18 18 N 1.30883 * 120.00286 * 16.83093 * 17 15 14 19 19 Si 1.86803 * 119.99627 * 196.83475 * 17 15 14 20 20 H 1.48503 * 109.47032 * 59.99869 * 19 17 15 21 21 H 1.48501 * 109.46862 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47144 * 299.99748 * 19 17 15 23 23 C 1.40885 * 119.68074 * 359.72158 * 14 13 12 24 24 C 1.36350 * 119.83230 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47529 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47487 * 300.00152 * 1 2 3 27 27 H 1.09006 * 109.47090 * 59.99874 * 1 2 3 28 28 H 1.07995 * 122.45790 * 0.02562 * 4 3 2 29 29 H 1.08001 * 124.36982 * 179.78498 * 5 4 3 30 30 H 0.97005 * 119.99646 * 4.82606 * 10 8 7 31 31 H 1.08001 * 119.91496 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.08950 * 180.27438 * 13 12 11 33 33 H 0.97000 * 119.99941 * 180.02562 * 18 17 15 34 34 H 1.07998 * 120.08400 * 179.97438 * 23 14 13 35 35 H 1.07999 * 119.92008 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2592 2.7206 0.0038 5 6 1.7473 3.9629 -0.0022 6 16 3.4528 3.9574 -0.0065 7 6 3.4996 2.1999 0.0005 8 6 4.6720 1.4100 0.0003 9 8 4.5877 0.1947 0.0048 10 7 5.8831 2.0015 -0.0050 11 6 7.0340 1.2284 -0.1122 12 6 8.1971 1.6189 0.5523 13 6 9.3278 0.8630 0.4564 14 6 9.3230 -0.3090 -0.3255 15 6 10.4912 -1.0934 -0.4346 16 1 10.6415 -1.7205 -1.3010 17 6 11.4543 -1.0587 0.5794 18 7 11.1472 -0.5783 1.7575 19 14 13.1787 -1.6980 0.2519 20 1 13.7934 -0.9200 -0.8536 21 1 14.0026 -1.5501 1.4785 22 1 13.1110 -3.1315 -0.1296 23 6 8.1465 -0.6941 -0.9981 24 6 7.0219 0.0691 -0.8886 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1991 2.5145 0.0074 29 1 1.1405 4.8564 -0.0037 30 1 5.9516 2.9668 0.0620 31 1 8.2006 2.5202 1.1473 32 1 10.2261 1.1642 0.9748 33 1 11.8151 -0.5539 2.4605 34 1 8.1356 -1.5910 -1.5995 35 1 6.1193 -0.2245 -1.4040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337259148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = 25.660891 kcal Electronic energy + Delta-G solvation = -20700.161623 eV Core-core repulsion = 17495.049622 eV Total energy + Delta-G solvation = -3205.112000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83759 -37.91985 -36.93912 -34.42384 -32.98371 -30.47562 -29.53337 -29.20912 -28.69946 -25.83593 -24.39966 -22.04132 -21.09829 -20.16564 -19.87510 -18.39786 -17.29160 -16.98336 -15.89798 -15.50760 -15.19552 -15.09331 -14.89722 -13.97687 -13.83117 -13.66173 -13.61945 -13.24578 -13.06982 -12.77075 -12.61298 -12.36381 -12.06526 -11.80285 -11.32327 -11.09506 -11.08026 -11.02529 -10.73499 -10.39221 -9.91456 -9.70409 -9.55991 -9.33287 -9.10723 -8.91744 -8.86846 -7.51635 -7.38104 -6.93410 -6.71775 -4.27515 0.31230 1.06002 1.50955 2.00206 2.08251 2.51139 2.71427 3.07662 3.09949 3.13235 3.17251 3.68206 3.82516 3.94721 4.65440 4.69870 4.90707 4.91629 4.95148 5.23019 5.45739 5.56792 5.70926 5.79458 5.83820 6.23033 6.46719 6.78904 6.96204 7.06380 7.20891 7.31108 7.61999 7.73581 7.91099 8.05464 8.29248 8.30332 8.60766 8.74757 8.90224 9.01826 10.19565 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.002924 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.917453 B = 9573.022800 C =10351.660453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 S 0.013 5.987 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.219 4.219 6 S 0.214 5.786 7 C -0.244 4.244 8 C 0.565 3.435 9 O -0.505 6.505 10 N -0.645 5.645 11 C -0.006 4.006 12 C -0.112 4.112 13 C -0.153 4.153 14 C 0.107 3.893 15 C -0.457 4.457 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.792 5.792 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.215 4.215 24 C -0.072 4.072 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.390 0.610 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.281 0.719 34 H 0.095 0.905 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.112 9.618 -1.750 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.356 4.356 2 S 0.255 5.745 3 C -0.180 4.180 4 C -0.188 4.188 5 C -0.358 4.358 6 S 0.479 5.521 7 C -0.375 4.375 8 C 0.353 3.647 9 O -0.384 6.384 10 N -0.287 5.287 11 C -0.099 4.099 12 C -0.132 4.132 13 C -0.173 4.173 14 C 0.104 3.896 15 C -0.486 4.486 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.235 4.235 24 C -0.092 4.092 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.188 0.812 30 H 0.223 0.777 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.391 8.887 -1.518 17.837 hybrid contribution -1.369 0.422 0.129 1.438 sum -16.760 9.309 -1.389 19.222 Atomic orbital electron populations 1.23974 0.99588 1.06932 1.05107 1.86812 1.00539 0.97783 1.89339 1.21612 0.93984 0.99844 1.02578 1.19911 1.00310 0.91100 1.07444 1.25099 1.00646 1.01936 1.08146 1.82986 1.00546 1.00706 1.67855 1.23254 0.96626 0.97283 1.20302 1.15619 0.82190 0.87690 0.79224 1.90854 1.85615 1.12629 1.49260 1.42827 1.04870 1.08998 1.72043 1.17098 0.85900 0.98646 1.08231 1.20224 0.93501 0.99902 0.99571 1.20884 0.97303 0.95180 1.03939 1.17663 0.91587 0.90657 0.89687 1.19536 1.01753 1.22711 1.04627 0.90367 1.25929 1.00579 0.93722 0.94128 1.69843 1.35241 1.34793 1.01862 0.86348 0.81325 0.80190 0.78746 1.18826 1.20363 1.18985 1.20646 0.93078 1.01057 1.08698 1.20245 0.97465 0.94420 0.97097 0.87470 0.90182 0.90191 0.83948 0.81224 0.77686 0.89195 0.86072 0.90798 0.88643 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 9.34 101.05 0.94 -0.67 16 2 S 0.01 0.19 20.51 -107.50 -2.20 -2.02 16 3 C -0.05 -0.73 6.17 -39.77 -0.25 -0.98 16 4 C -0.15 -1.61 9.47 -41.23 -0.39 -2.00 16 5 C -0.22 -1.99 10.89 29.07 0.32 -1.68 16 6 S 0.21 2.29 22.00 -107.50 -2.36 -0.07 16 7 C -0.24 -3.76 6.28 -38.60 -0.24 -4.00 16 8 C 0.56 10.94 7.30 -15.07 -0.11 10.83 16 9 O -0.50 -11.48 12.48 5.08 0.06 -11.41 16 10 N -0.64 -12.29 5.28 -12.40 -0.07 -12.36 16 11 C -0.01 -0.15 6.27 -83.62 -0.52 -0.67 16 12 C -0.11 -2.61 9.90 -39.78 -0.39 -3.01 16 13 C -0.15 -3.98 8.63 -39.26 -0.34 -4.31 16 14 C 0.11 2.89 5.57 -106.79 -0.59 2.30 16 15 C -0.46 -12.21 9.04 -37.86 -0.34 -12.55 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 18 N -0.79 -20.56 10.95 55.54 0.61 -19.95 16 19 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 C -0.21 -5.54 9.74 -39.26 -0.38 -5.92 16 24 C -0.07 -1.78 8.57 -39.78 -0.34 -2.12 16 25 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 26 H 0.08 0.60 7.96 -51.92 -0.41 0.19 16 27 H 0.08 0.59 7.97 -51.92 -0.41 0.18 16 28 H 0.14 1.14 6.71 -52.49 -0.35 0.79 16 29 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.39 6.07 7.79 -40.82 -0.32 5.75 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.10 2.48 6.46 -52.49 -0.34 2.14 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -31.07 326.00 -10.22 -41.29 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.40 Total: 8.97 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.73 Total: -23.01 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.54 Total: -32.31 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.06 Total: -11.41 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -4.57 Total: -2.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.07 -10.22 -41.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337259148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.950 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds