Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76201 * 103.00014 * 2 1 4 4 C 1.38277 * 123.54090 * 0.18838 * 3 2 1 5 5 C 1.33482 * 115.09316 * 180.25288 * 4 3 2 6 6 S 1.70552 * 111.26252 * 359.76336 * 5 4 3 7 7 C 1.37677 * 123.54082 * 179.97438 * 3 2 1 8 8 C 1.41370 * 125.49163 * 0.04208 * 7 3 2 9 9 O 1.21824 * 119.99933 * 359.71299 * 8 7 3 10 10 N 1.34778 * 120.00059 * 179.71317 * 8 7 3 11 11 C 1.39070 * 119.99813 * 185.09228 * 10 8 7 12 12 C 1.39525 * 119.83851 * 214.21383 * 11 10 8 13 13 C 1.36355 * 120.16990 * 179.72686 * 12 11 10 14 14 C 1.40887 * 119.82652 * 0.54734 * 13 12 11 15 15 C 1.41135 * 120.15988 * 179.70454 * 14 13 12 16 16 H 1.07996 * 119.99772 * 205.38457 * 15 14 13 17 17 C 1.39892 * 119.99841 * 25.39072 * 15 14 13 18 18 N 1.30883 * 120.00286 * 16.83093 * 17 15 14 19 19 Si 1.86803 * 119.99627 * 196.83475 * 17 15 14 20 20 H 1.48503 * 109.47032 * 59.99869 * 19 17 15 21 21 H 1.48501 * 109.46862 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47144 * 299.99748 * 19 17 15 23 23 C 1.40885 * 119.68074 * 359.72158 * 14 13 12 24 24 C 1.36350 * 119.83230 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47529 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47487 * 300.00152 * 1 2 3 27 27 H 1.09006 * 109.47090 * 59.99874 * 1 2 3 28 28 H 1.07995 * 122.45790 * 0.02562 * 4 3 2 29 29 H 1.08001 * 124.36982 * 179.78498 * 5 4 3 30 30 H 0.97005 * 119.99646 * 4.82606 * 10 8 7 31 31 H 1.08001 * 119.91496 * 359.97438 * 12 11 10 32 32 H 1.07999 * 120.08950 * 180.27438 * 13 12 11 33 33 H 0.97000 * 119.99941 * 180.02562 * 18 17 15 34 34 H 1.07998 * 120.08400 * 179.97438 * 23 14 13 35 35 H 1.07999 * 119.92008 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2592 2.7206 0.0038 5 6 1.7473 3.9629 -0.0022 6 16 3.4528 3.9574 -0.0065 7 6 3.4996 2.1999 0.0005 8 6 4.6720 1.4100 0.0003 9 8 4.5877 0.1947 0.0048 10 7 5.8831 2.0015 -0.0050 11 6 7.0340 1.2284 -0.1122 12 6 8.1971 1.6189 0.5523 13 6 9.3278 0.8630 0.4564 14 6 9.3230 -0.3090 -0.3255 15 6 10.4912 -1.0934 -0.4346 16 1 10.6415 -1.7205 -1.3010 17 6 11.4543 -1.0587 0.5794 18 7 11.1472 -0.5783 1.7575 19 14 13.1787 -1.6980 0.2519 20 1 13.7934 -0.9200 -0.8536 21 1 14.0026 -1.5501 1.4785 22 1 13.1110 -3.1315 -0.1296 23 6 8.1465 -0.6941 -0.9981 24 6 7.0219 0.0691 -0.8886 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.1991 2.5145 0.0074 29 1 1.1405 4.8564 -0.0037 30 1 5.9516 2.9668 0.0620 31 1 8.2006 2.5202 1.1473 32 1 10.2261 1.1642 0.9748 33 1 11.8151 -0.5539 2.4605 34 1 8.1356 -1.5910 -1.5995 35 1 6.1193 -0.2245 -1.4040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337259148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = 7.579933 kcal Electronic energy + Delta-G solvation = -20700.945672 eV Core-core repulsion = 17495.049622 eV Total energy + Delta-G solvation = -3205.896050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35685 -39.35334 -38.33579 -36.18240 -34.79144 -31.79734 -31.43786 -30.37964 -29.90783 -27.29678 -25.82709 -23.62198 -22.86126 -21.82862 -20.87749 -19.76118 -19.21891 -18.33310 -17.29572 -16.96985 -16.73403 -16.34330 -16.03188 -15.72327 -15.07444 -14.97851 -14.58106 -14.43886 -14.36202 -14.02477 -13.86008 -13.81128 -13.64840 -13.25387 -13.16836 -12.85993 -12.75097 -12.47078 -11.95286 -11.82841 -11.46264 -11.39727 -11.11261 -10.77836 -10.61869 -10.54168 -9.82965 -9.48528 -8.87228 -8.61169 -8.38238 -6.27727 -0.68933 0.10254 0.69584 0.83673 1.08532 1.13293 1.24035 1.39922 1.50698 1.53987 1.61783 2.20208 2.23215 2.37338 2.76144 3.71278 3.88102 4.08325 4.19912 4.29982 4.31448 4.38064 4.49216 4.66546 4.87875 4.89058 4.92501 5.02207 5.11270 5.13244 5.30865 5.41602 5.65079 5.87827 6.01761 6.08990 6.35584 6.62518 6.65974 6.92273 6.97476 7.30868 8.33397 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.002924 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.917453 B = 9573.022800 C =10351.660453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 S -0.079 6.079 3 C -0.037 4.037 4 C -0.168 4.168 5 C -0.188 4.188 6 S 0.260 5.740 7 C -0.307 4.307 8 C 0.566 3.434 9 O -0.550 6.550 10 N -0.644 5.644 11 C 0.008 3.992 12 C -0.111 4.111 13 C -0.170 4.170 14 C 0.077 3.923 15 C -0.495 4.495 16 H 0.076 0.924 17 C 0.035 3.965 18 N -0.824 5.824 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.232 4.232 24 C -0.083 4.083 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.172 0.828 29 H 0.215 0.785 30 H 0.408 0.592 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.290 0.710 34 H 0.095 0.905 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.180 12.175 -1.464 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.163 5.837 3 C -0.166 4.166 4 C -0.202 4.202 5 C -0.327 4.327 6 S 0.526 5.474 7 C -0.437 4.437 8 C 0.357 3.643 9 O -0.432 6.432 10 N -0.288 5.288 11 C -0.086 4.086 12 C -0.131 4.131 13 C -0.190 4.190 14 C 0.075 3.925 15 C -0.524 4.524 16 H 0.094 0.906 17 C -0.180 4.180 18 N -0.449 5.449 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.252 4.252 24 C -0.103 4.103 25 H 0.138 0.862 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.190 0.810 29 H 0.232 0.768 30 H 0.244 0.756 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.480 11.484 -1.233 20.951 hybrid contribution -1.057 -0.243 0.050 1.086 sum -18.537 11.241 -1.183 21.711 Atomic orbital electron populations 1.23981 0.93826 1.08366 1.06820 1.87084 1.06927 1.00407 1.89283 1.21830 0.94403 0.99491 1.00924 1.20143 1.01155 0.90559 1.08320 1.25688 1.00083 1.02999 1.03961 1.82793 1.01824 0.96198 1.66625 1.22983 0.95440 1.00250 1.24999 1.16145 0.83047 0.87605 0.77535 1.90830 1.86489 1.14827 1.51018 1.42721 1.03855 1.09651 1.72596 1.17163 0.87167 0.98010 1.06241 1.20481 0.92711 1.00617 0.99326 1.20902 0.98003 0.95546 1.04507 1.17977 0.92229 0.91617 0.90715 1.19774 1.03087 1.24004 1.05569 0.90619 1.26789 1.04377 0.93563 0.93313 1.69887 1.36844 1.35535 1.02674 0.85201 0.75703 0.79454 0.79020 1.18228 1.18981 1.18649 1.20767 0.93522 1.01603 1.09357 1.20320 0.96856 0.95343 0.97804 0.86206 0.88401 0.88362 0.81030 0.76815 0.75578 0.85959 0.86932 0.89948 0.88713 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.34 113.37 1.06 -1.33 16 2 S -0.08 -2.28 20.51 -56.49 -1.16 -3.43 16 3 C -0.04 -0.98 6.17 22.15 0.14 -0.84 16 4 C -0.17 -2.89 9.47 21.20 0.20 -2.69 16 5 C -0.19 -2.47 10.89 66.74 0.73 -1.74 16 6 S 0.26 4.76 22.00 -56.49 -1.24 3.51 16 7 C -0.31 -9.22 6.28 22.91 0.14 -9.08 16 8 C 0.57 22.37 7.30 85.01 0.62 22.99 16 9 O -0.55 -26.26 12.48 -4.75 -0.06 -26.32 16 10 N -0.64 -24.65 5.28 -311.31 -1.64 -26.29 16 11 C 0.01 0.36 6.27 38.62 0.24 0.60 16 12 C -0.11 -5.26 9.90 22.14 0.22 -5.05 16 13 C -0.17 -9.11 8.63 22.48 0.19 -8.92 16 14 C 0.08 4.39 5.57 -21.27 -0.12 4.27 16 15 C -0.50 -27.64 9.04 23.38 0.21 -27.43 16 16 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 17 C 0.03 1.78 5.15 85.23 0.44 2.22 16 18 N -0.82 -43.75 10.95 21.82 0.24 -43.51 16 19 Si 0.99 38.75 29.59 68.60 2.03 40.78 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.23 -12.71 9.74 22.48 0.22 -12.49 16 24 C -0.08 -4.29 8.57 22.14 0.19 -4.10 16 25 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 1.13 7.96 -2.39 -0.02 1.11 16 27 H 0.10 1.12 7.97 -2.39 -0.02 1.10 16 28 H 0.17 1.89 6.71 -2.91 -0.02 1.87 16 29 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.41 12.32 7.79 -92.70 -0.72 11.60 16 31 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.11 6.16 6.18 -2.91 -0.02 6.15 16 33 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 34 H 0.09 4.99 8.06 -2.91 -0.02 4.96 16 35 H 0.10 5.10 6.46 -2.91 -0.02 5.08 16 Total: -1.00 -73.25 326.00 3.07 -70.18 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.42 Total: 28.68 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 4.48 Total: -43.60 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.41 Total: -69.80 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.40 Total: 0.08 kcal Total: -73.25 3.07 -70.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337259148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.759 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds