Wall clock time and date at job start Tue Mar 31 2020 12:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00177 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99832 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00076 * 3 2 1 7 7 C 1.39012 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00541 * 179.73031 * 7 2 1 9 9 N 1.36915 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00008 * 179.73052 * 9 7 2 11 11 O 1.21646 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.47276 * 119.99591 * 180.02562 * 10 9 7 13 13 C 1.39803 * 120.21985 * 359.72054 * 12 10 9 14 14 C 1.37730 * 119.92175 * 179.76849 * 13 12 10 15 15 C 1.38668 * 120.37347 * 0.50977 * 14 13 12 16 16 C 1.37922 * 120.45082 * 359.73940 * 15 14 13 17 17 C 1.39033 * 120.06138 * 0.02562 * 16 15 14 18 18 S 1.76197 * 120.18506 * 180.02562 * 17 16 15 19 19 C 1.81406 * 103.00068 * 359.97054 * 18 17 16 20 20 C 1.50699 * 109.47142 * 180.02562 * 19 18 17 21 21 C 1.33385 * 125.20548 * 89.99920 * 20 19 18 22 22 C 1.38420 * 114.92432 * 179.97438 * 21 20 19 23 23 C 1.33395 * 114.91777 * 0.02562 * 22 21 20 24 24 S 1.75879 * 109.59665 * 359.75382 * 23 22 21 25 25 H 0.97004 * 120.00415 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99802 * 359.72826 * 9 7 2 27 27 H 1.07997 * 120.04228 * 0.02562 * 13 12 10 28 28 H 1.07998 * 119.81305 * 180.28034 * 14 13 12 29 29 H 1.08005 * 119.76937 * 179.76667 * 15 14 13 30 30 H 1.07999 * 119.97013 * 179.97438 * 16 15 14 31 31 H 1.09001 * 109.46913 * 300.00242 * 19 18 17 32 32 H 1.09002 * 109.46692 * 60.00142 * 19 18 17 33 33 H 1.07998 * 122.53892 * 359.95976 * 21 20 19 34 34 H 1.07996 * 122.54132 * 180.02562 * 22 21 20 35 35 H 1.08004 * 125.20069 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4953 2.0464 -1.4002 5 1 1.4452 2.6526 0.7000 6 1 3.5453 1.4402 0.7000 7 6 2.0089 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0049 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0065 11 8 3.2148 -3.5568 -0.0124 12 6 1.2619 -4.8322 -0.0071 13 6 -0.1361 -4.8375 0.0045 14 6 -0.8186 -6.0338 -0.0010 15 6 -0.1269 -7.2357 -0.0072 16 6 1.2522 -7.2484 -0.0135 17 6 1.9598 -6.0516 -0.0131 18 16 3.7217 -6.0641 -0.0217 19 6 4.1172 -7.8345 -0.0286 20 6 5.6133 -8.0149 -0.0358 21 6 6.3816 -8.1101 1.0504 22 6 7.7326 -8.2730 0.7968 23 6 8.0615 -8.3096 -0.4954 24 16 6.6127 -8.1389 -1.4779 25 1 -0.4851 0.8400 -0.0004 26 1 0.3544 -2.3896 0.0038 27 1 -0.6803 -3.9047 0.0134 28 1 -1.8986 -6.0358 0.0034 29 1 -0.6720 -8.1681 -0.0076 30 1 1.7830 -8.1889 -0.0179 31 1 3.6993 -8.3035 0.8622 32 1 3.6906 -8.2986 -0.9178 33 1 5.9801 -8.0633 2.0519 34 1 8.4649 -8.3636 1.5854 35 1 9.0636 -8.4304 -0.8796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339922036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:46 Heat of formation + Delta-G solvation = 7.721939 kcal Electronic energy + Delta-G solvation = -20511.504087 eV Core-core repulsion = 17305.614195 eV Total energy + Delta-G solvation = -3205.889892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.044 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80098 -38.97247 -38.77407 -36.12865 -33.58650 -33.15994 -31.95453 -31.84119 -27.72240 -27.28188 -24.69654 -23.91822 -23.58062 -21.32135 -20.31024 -20.14459 -18.82906 -18.16964 -17.62277 -16.90287 -16.44227 -16.28218 -16.15637 -15.64549 -15.55020 -15.40194 -15.03501 -14.85098 -14.38801 -13.75292 -13.66792 -13.62761 -13.55854 -13.29259 -12.95796 -12.73890 -12.65578 -12.48826 -12.14509 -12.09099 -11.70226 -11.60093 -11.39161 -10.67788 -10.16395 -10.13381 -9.93940 -9.45411 -9.39396 -8.56194 -8.33570 -5.99947 -0.19355 -0.07406 0.29209 0.64345 0.83097 1.07245 1.38397 1.39274 1.52709 1.63122 1.95821 2.08104 2.25670 2.79824 3.11675 3.27776 3.64349 3.84029 3.98917 4.05128 4.18956 4.23573 4.36355 4.43944 4.53067 4.66714 4.68804 4.71051 4.92883 5.16888 5.21976 5.33355 5.34242 5.36566 5.49170 5.54360 5.88821 5.95510 6.49406 7.01712 7.42408 7.98792 8.61309 Molecular weight = 319.04amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.003659 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.256486 B = 7651.277576 C = 9451.384016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.083 0.917 9 N -0.554 5.554 10 C 0.458 3.542 11 O -0.602 6.602 12 C -0.129 4.129 13 C -0.090 4.090 14 C -0.125 4.125 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.071 4.071 18 S -0.054 6.054 19 C -0.078 4.078 20 C -0.176 4.176 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.207 4.207 24 S 0.087 5.913 25 H 0.282 0.718 26 H 0.397 0.603 27 H 0.124 0.876 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -19.924 0.265 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.189 5.189 10 C 0.247 3.753 11 O -0.491 6.491 12 C -0.138 4.138 13 C -0.111 4.111 14 C -0.146 4.146 15 C -0.096 4.096 16 C -0.166 4.166 17 C -0.187 4.187 18 S 0.194 5.806 19 C -0.226 4.226 20 C -0.294 4.294 21 C -0.163 4.163 22 C -0.173 4.173 23 C -0.343 4.343 24 S 0.350 5.650 25 H 0.092 0.908 26 H 0.232 0.768 27 H 0.142 0.858 28 H 0.180 0.820 29 H 0.189 0.811 30 H 0.170 0.830 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.400 -18.804 -1.310 19.608 hybrid contribution -0.773 0.303 1.434 1.657 sum 4.626 -18.501 0.124 19.071 Atomic orbital electron populations 1.69649 1.06971 1.29826 1.48760 1.26149 0.96613 1.02594 0.95701 0.84862 0.77910 0.76331 0.78855 1.19398 1.19051 1.19689 1.19763 0.92989 0.83736 1.49790 0.89935 1.41838 1.09445 1.04577 1.63031 1.18457 0.87613 0.84625 0.84586 1.90494 1.14447 1.86116 1.58010 1.19785 0.94678 0.91691 1.07670 1.21468 0.91654 1.00290 0.97692 1.21452 1.01685 0.91038 1.00432 1.21620 0.93012 0.99497 0.95439 1.21419 0.95835 0.95526 1.03868 1.22253 0.97940 0.95717 1.02741 1.87933 0.98581 1.03687 1.90361 1.22452 0.92882 1.00299 1.06997 1.23762 0.97649 1.11127 0.96904 1.20455 0.93801 1.02370 0.99691 1.20438 0.96128 1.03424 0.97268 1.26010 1.02444 1.09242 0.96635 1.84379 0.98995 1.71733 1.09851 0.90822 0.76788 0.85769 0.82032 0.81097 0.83044 0.86591 0.87998 0.83219 0.81696 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.50 13.05 21.67 0.28 -49.21 16 2 C -0.01 -0.52 5.50 84.95 0.47 -0.05 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.33 -19.57 9.68 84.09 0.81 -18.75 16 8 H 0.08 5.14 7.15 -2.91 -0.02 5.12 16 9 N -0.55 -30.39 5.23 -310.10 -1.62 -32.01 16 10 C 0.46 24.32 7.69 86.62 0.67 24.99 16 11 O -0.60 -35.41 13.34 -4.18 -0.06 -35.46 16 12 C -0.13 -5.47 5.89 -19.97 -0.12 -5.59 16 13 C -0.09 -3.12 9.53 22.53 0.21 -2.91 16 14 C -0.13 -3.11 10.02 22.25 0.22 -2.89 16 15 C -0.08 -1.62 10.03 22.30 0.22 -1.40 16 16 C -0.14 -3.74 9.36 22.39 0.21 -3.53 16 17 C -0.07 -2.63 6.16 23.01 0.14 -2.49 16 18 S -0.05 -2.07 18.81 -56.49 -1.06 -3.13 16 19 C -0.08 -1.99 4.83 71.24 0.34 -1.64 16 20 C -0.18 -4.45 5.77 24.59 0.14 -4.31 16 21 C -0.13 -2.96 10.05 21.21 0.21 -2.75 16 22 C -0.14 -2.77 10.18 21.22 0.22 -2.55 16 23 C -0.21 -3.94 11.23 66.72 0.75 -3.19 16 24 S 0.09 2.04 23.33 -56.49 -1.32 0.72 16 25 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.40 20.54 5.92 -92.70 -0.55 19.99 16 27 H 0.12 4.36 6.40 -2.91 -0.02 4.34 16 28 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.15 3.00 5.89 -2.91 -0.02 2.98 16 31 H 0.12 2.46 7.75 -2.39 -0.02 2.44 16 32 H 0.10 2.29 7.75 -2.39 -0.02 2.27 16 33 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -72.96 330.03 3.35 -69.61 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.59 Total: 31.20 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.51 Total: -27.06 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.34 Total: -81.22 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.06 Total: -35.46 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.38 Total: -2.41 kcal Total: -72.96 3.35 -69.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339922036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.333 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds