Wall clock time and date at job start Tue Mar 31 2020 12:09:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46502 * 109.46921 * 2 1
4 4 C 1.36941 * 119.99882 * 273.96833 * 3 2 1
5 5 H 1.07994 * 119.99892 * 173.22914 * 4 3 2
6 6 C 1.38806 * 119.99970 * 353.22789 * 4 3 2
7 7 N 1.31623 * 120.00351 * 30.93739 * 6 4 3
8 8 Si 1.86803 * 120.00121 * 210.93599 * 6 4 3
9 9 H 1.48504 * 109.46733 * 359.97438 * 8 6 4
10 10 H 1.48491 * 109.47202 * 119.99952 * 8 6 4
11 11 H 1.48496 * 109.47078 * 240.00162 * 8 6 4
12 12 S 1.65593 * 120.00142 * 93.97162 * 3 2 1
13 13 O 1.42107 * 106.40077 * 329.35605 * 12 3 2
14 14 O 1.42099 * 106.40633 * 196.43841 * 12 3 2
15 15 C 1.76195 * 107.21863 * 82.89426 * 12 3 2
16 16 C 1.38275 * 119.95301 * 244.92007 * 15 12 3
17 17 C 1.38130 * 120.06608 * 180.29378 * 16 15 12
18 18 C 1.38760 * 119.97085 * 359.73500 * 17 16 15
19 19 O 1.35902 * 120.04802 * 179.97438 * 18 17 16
20 20 C 1.42897 * 117.00093 * 0.02562 * 19 18 17
21 21 C 1.38687 * 119.90475 * 359.97438 * 18 17 16
22 22 C 1.38282 * 119.92963 * 359.97438 * 21 18 17
23 23 Cl 1.73595 * 119.98357 * 180.02562 * 22 21 18
24 24 H 1.09001 * 109.47187 * 60.00206 * 1 2 3
25 25 H 1.08998 * 109.47320 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47226 * 300.00376 * 1 2 3
27 27 H 1.09001 * 109.46931 * 240.00252 * 2 1 3
28 28 H 1.09000 * 109.46716 * 120.00040 * 2 1 3
29 29 H 0.96996 * 120.00206 * 180.02562 * 7 6 4
30 30 H 1.07993 * 119.96681 * 0.02562 * 16 15 12
31 31 H 1.07996 * 120.01255 * 179.70249 * 17 16 15
32 32 H 1.09001 * 109.47354 * 59.99532 * 20 19 18
33 33 H 1.09002 * 109.47670 * 179.97438 * 20 19 18
34 34 H 1.08997 * 109.46865 * 299.99982 * 20 19 18
35 35 H 1.08003 * 120.03785 * 180.02562 * 21 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1692 2.0541 -1.1831
5 1 2.4233 3.1037 -1.1787
6 6 1.9954 1.3871 -2.3879
7 7 1.1485 0.3827 -2.4680
8 14 2.9635 1.9149 -3.8958
9 1 3.8409 3.0604 -3.5447
10 1 3.7958 0.7809 -4.3716
11 1 2.0230 2.3234 -4.9699
12 16 2.3880 2.1288 1.4306
13 8 1.5237 1.5698 2.4104
14 8 2.4494 3.5208 1.1519
15 6 4.0219 1.6366 1.8694
16 6 4.2329 0.8807 3.0079
17 6 5.5135 0.4987 3.3573
18 6 6.5887 0.8691 2.5622
19 8 7.8493 0.4945 2.9049
20 6 7.9946 -0.2804 4.0966
21 6 6.3750 1.6221 1.4174
22 6 5.0912 2.0015 1.0707
23 17 4.8220 2.9435 -0.3623
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3633 0.5139 0.8899
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 1.0274 -0.0836 -3.3099
30 1 3.3962 0.5924 3.6268
31 1 5.6779 -0.0876 4.2493
32 1 7.4300 -1.2076 3.9982
33 1 9.0481 -0.5118 4.2536
34 1 7.6162 0.2867 4.9471
35 1 7.2102 1.9113 0.7967
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000341464622.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:28
Heat of formation + Delta-G solvation = -63.601290 kcal
Electronic energy + Delta-G solvation = -23537.051071 eV
Core-core repulsion = 19882.882651 eV
Total energy + Delta-G solvation = -3654.168420 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.048 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-40.08093 -37.49602 -36.18764 -36.10287 -35.59205 -34.47956 -31.65012 -30.95381
-29.94228 -29.26434 -27.45735 -24.57173 -22.83019 -22.23871 -21.61395 -18.62083
-18.32595 -17.41814 -16.69713 -16.32496 -16.18139 -15.88801 -14.91731 -14.55324
-14.41200 -13.94039 -13.69663 -13.43305 -13.10406 -13.02554 -12.67461 -12.39402
-12.24599 -11.73105 -11.61293 -11.38029 -11.17317 -10.98643 -10.89881 -10.79973
-10.73652 -10.51379 -10.48666 -10.40642 -9.93408 -9.84738 -9.60418 -8.90800
-8.62349 -8.37423 -8.15732 -6.56416 -3.74725 1.12958 1.36178 1.63096
2.39583 3.13530 3.21972 3.26624 3.28851 3.60125 4.05876 4.43364
4.70536 4.74117 4.93210 4.95600 4.95993 5.06855 5.25747 5.35395
5.56686 5.85997 5.90189 5.98125 6.14745 6.29141 6.40173 6.61079
6.63199 6.74057 6.92061 7.15606 7.26645 7.30753 7.61057 7.80423
8.39093 8.77229 9.18631 10.39086
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.015545 B = 0.006235 C = 0.005341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1800.781994 B = 4489.578736 C = 5240.828711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.135 3.865
3 N -0.810 5.810
4 C -0.266 4.266
5 H 0.122 0.878
6 C 0.055 3.945
7 N -0.813 5.813
8 Si 0.878 3.122
9 H -0.262 1.262
10 H -0.276 1.276
11 H -0.280 1.280
12 S 2.568 3.432
13 O -0.989 6.989
14 O -0.970 6.970
15 C -0.698 4.698
16 C 0.014 3.986
17 C -0.234 4.234
18 C 0.166 3.834
19 O -0.315 6.315
20 C 0.026 3.974
21 C -0.172 4.172
22 C 0.089 3.911
23 Cl -0.020 7.020
24 H 0.087 0.913
25 H 0.036 0.964
26 H 0.033 0.967
27 H 0.099 0.901
28 H 0.031 0.969
29 H 0.272 0.728
30 H 0.145 0.855
31 H 0.133 0.867
32 H 0.058 0.942
33 H 0.100 0.900
34 H 0.057 0.943
35 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.084 -3.680 6.699 11.871
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.010 3.990
3 N -0.638 5.638
4 C -0.408 4.408
5 H 0.140 0.860
6 C -0.157 4.157
7 N -0.453 5.453
8 Si 0.703 3.297
9 H -0.186 1.186
10 H -0.201 1.201
11 H -0.206 1.206
12 S 2.661 3.339
13 O -0.978 6.978
14 O -0.959 6.959
15 C -0.774 4.774
16 C -0.005 4.005
17 C -0.253 4.253
18 C 0.120 3.880
19 O -0.228 6.228
20 C -0.069 4.069
21 C -0.192 4.192
22 C 0.061 3.939
23 Cl 0.010 6.990
24 H 0.106 0.894
25 H 0.055 0.945
26 H 0.052 0.948
27 H 0.117 0.883
28 H 0.049 0.951
29 H 0.083 0.917
30 H 0.163 0.837
31 H 0.150 0.850
32 H 0.076 0.924
33 H 0.118 0.882
34 H 0.076 0.924
35 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 8.775 -3.135 7.121 11.728
hybrid contribution 1.291 -0.389 -0.694 1.517
sum 10.066 -3.524 6.428 12.453
Atomic orbital electron populations
1.21979 0.96112 0.99690 1.02185 1.21162 0.94968 0.82481 1.00404
1.53906 1.64872 1.23233 1.21770 1.19707 1.43964 0.94900 0.82225
0.86021 1.25257 0.95730 0.95722 0.98962 1.70264 1.26313 1.21604
1.27077 0.86646 0.81326 0.79589 0.82167 1.18620 1.20148 1.20566
1.09295 0.75406 0.75438 0.73769 1.93387 1.64340 1.79847 1.60257
1.93410 1.86932 1.31352 1.84193 1.32347 1.28120 1.13092 1.03857
1.20711 0.96703 0.90197 0.92880 1.21356 0.93217 1.08088 1.02661
1.18904 0.83409 0.92660 0.93066 1.86063 1.25185 1.68176 1.43398
1.23093 1.03467 0.94758 0.85577 1.20251 0.96518 1.04328 0.98142
1.20257 0.92650 0.91759 0.89264 1.98488 1.95724 1.70159 1.34628
0.89392 0.94459 0.94824 0.88349 0.95052 0.91712 0.83742 0.84954
0.92377 0.88161 0.92438 0.84186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 43.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.03 9.70 37.16 0.36 -2.67 16
2 C 0.14 3.01 5.29 -4.04 -0.02 2.99 16
3 N -0.81 -19.19 2.90 -59.91 -0.17 -19.36 16
4 C -0.27 -6.49 7.27 -15.06 -0.11 -6.60 16
5 H 0.12 3.06 6.12 -52.49 -0.32 2.74 16
6 C 0.05 1.29 5.01 -17.43 -0.09 1.21 16
7 N -0.81 -19.02 8.46 55.49 0.47 -18.55 16
8 Si 0.88 18.51 29.65 -169.99 -5.04 13.47 16
9 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16
10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16
12 S 2.57 59.89 5.01 -107.50 -0.54 59.35 16
13 O -0.99 -23.86 15.90 -57.17 -0.91 -24.77 16
14 O -0.97 -24.67 15.15 -57.17 -0.87 -25.53 16
15 C -0.70 -14.28 5.91 -39.52 -0.23 -14.51 16
16 C 0.01 0.25 9.54 -39.61 -0.38 -0.12 16
17 C -0.23 -3.49 9.04 -39.43 -0.36 -3.85 16
18 C 0.17 2.58 6.69 -39.22 -0.26 2.32 16
19 O -0.32 -4.19 10.50 -19.43 -0.20 -4.40 16
20 C 0.03 0.23 9.81 101.05 0.99 1.22 16
21 C -0.17 -2.95 9.77 -39.40 -0.38 -3.34 16
22 C 0.09 1.76 6.30 -39.52 -0.25 1.51 16
23 Cl -0.02 -0.40 23.41 -51.86 -1.21 -1.62 16
24 H 0.09 2.05 6.47 -51.93 -0.34 1.71 16
25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16
27 H 0.10 2.25 5.71 -51.93 -0.30 1.95 16
28 H 0.03 0.64 7.84 -51.93 -0.41 0.23 16
29 H 0.27 5.97 8.31 -40.82 -0.34 5.64 16
30 H 0.14 2.36 7.33 -52.49 -0.38 1.98 16
31 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16
32 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16
33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16
35 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16
LS Contribution 312.19 15.07 4.70 4.70
Total: -1.00 -28.39 312.19 -8.18 -36.57
By element:
Atomic # 1 Polarization: 5.67 SS G_CDS: -3.68 Total: 1.99 kcal
Atomic # 6 Polarization: -21.13 SS G_CDS: -0.73 Total: -21.86 kcal
Atomic # 7 Polarization: -38.21 SS G_CDS: 0.30 Total: -37.91 kcal
Atomic # 8 Polarization: -52.72 SS G_CDS: -1.98 Total: -54.70 kcal
Atomic # 14 Polarization: 18.51 SS G_CDS: -5.04 Total: 13.47 kcal
Atomic # 16 Polarization: 59.89 SS G_CDS: -0.54 Total: 59.35 kcal
Atomic # 17 Polarization: -0.40 SS G_CDS: -1.21 Total: -1.62 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -28.39 -8.18 -36.57 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000341464622.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.027 kcal
(2) G-P(sol) polarization free energy of solvation -28.391 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.601 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds