Wall clock time and date at job start Tue Mar 31 2020 12:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46502 * 109.46921 * 2 1
4 4 C 1.36941 * 119.99882 * 273.96833 * 3 2 1
5 5 H 1.07994 * 119.99892 * 173.22914 * 4 3 2
6 6 C 1.38806 * 119.99970 * 353.22789 * 4 3 2
7 7 N 1.31623 * 120.00351 * 30.93739 * 6 4 3
8 8 Si 1.86803 * 120.00121 * 210.93599 * 6 4 3
9 9 H 1.48504 * 109.46733 * 359.97438 * 8 6 4
10 10 H 1.48491 * 109.47202 * 119.99952 * 8 6 4
11 11 H 1.48496 * 109.47078 * 240.00162 * 8 6 4
12 12 S 1.65593 * 120.00142 * 93.97162 * 3 2 1
13 13 O 1.42107 * 106.40077 * 329.35605 * 12 3 2
14 14 O 1.42099 * 106.40633 * 196.43841 * 12 3 2
15 15 C 1.76195 * 107.21863 * 82.89426 * 12 3 2
16 16 C 1.38275 * 119.95301 * 244.92007 * 15 12 3
17 17 C 1.38130 * 120.06608 * 180.29378 * 16 15 12
18 18 C 1.38760 * 119.97085 * 359.73500 * 17 16 15
19 19 O 1.35902 * 120.04802 * 179.97438 * 18 17 16
20 20 C 1.42897 * 117.00093 * 0.02562 * 19 18 17
21 21 C 1.38687 * 119.90475 * 359.97438 * 18 17 16
22 22 C 1.38282 * 119.92963 * 359.97438 * 21 18 17
23 23 Cl 1.73595 * 119.98357 * 180.02562 * 22 21 18
24 24 H 1.09001 * 109.47187 * 60.00206 * 1 2 3
25 25 H 1.08998 * 109.47320 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47226 * 300.00376 * 1 2 3
27 27 H 1.09001 * 109.46931 * 240.00252 * 2 1 3
28 28 H 1.09000 * 109.46716 * 120.00040 * 2 1 3
29 29 H 0.96996 * 120.00206 * 180.02562 * 7 6 4
30 30 H 1.07993 * 119.96681 * 0.02562 * 16 15 12
31 31 H 1.07996 * 120.01255 * 179.70249 * 17 16 15
32 32 H 1.09001 * 109.47354 * 59.99532 * 20 19 18
33 33 H 1.09002 * 109.47670 * 179.97438 * 20 19 18
34 34 H 1.08997 * 109.46865 * 299.99982 * 20 19 18
35 35 H 1.08003 * 120.03785 * 180.02562 * 21 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1692 2.0541 -1.1831
5 1 2.4233 3.1037 -1.1787
6 6 1.9954 1.3871 -2.3879
7 7 1.1485 0.3827 -2.4680
8 14 2.9635 1.9149 -3.8958
9 1 3.8409 3.0604 -3.5447
10 1 3.7958 0.7809 -4.3716
11 1 2.0230 2.3234 -4.9699
12 16 2.3880 2.1288 1.4306
13 8 1.5237 1.5698 2.4104
14 8 2.4494 3.5208 1.1519
15 6 4.0219 1.6366 1.8694
16 6 4.2329 0.8807 3.0079
17 6 5.5135 0.4987 3.3573
18 6 6.5887 0.8691 2.5622
19 8 7.8493 0.4945 2.9049
20 6 7.9946 -0.2804 4.0966
21 6 6.3750 1.6221 1.4174
22 6 5.0912 2.0015 1.0707
23 17 4.8220 2.9435 -0.3623
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3633 0.5139 0.8899
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 1.0274 -0.0836 -3.3099
30 1 3.3962 0.5924 3.6268
31 1 5.6779 -0.0876 4.2493
32 1 7.4300 -1.2076 3.9982
33 1 9.0481 -0.5118 4.2536
34 1 7.6162 0.2867 4.9471
35 1 7.2102 1.9113 0.7967
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000341464622.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:26
Heat of formation + Delta-G solvation = -81.740791 kcal
Electronic energy + Delta-G solvation = -23537.837658 eV
Core-core repulsion = 19882.882651 eV
Total energy + Delta-G solvation = -3654.955007 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.048 amu
Computer time = 1.59 seconds
Orbital eigenvalues (eV)
-41.26636 -38.77818 -37.97459 -37.89829 -37.19730 -36.48512 -33.35815 -32.26324
-31.29934 -31.00230 -28.30013 -26.33581 -24.20783 -23.58659 -23.33427 -20.37171
-19.64193 -19.03355 -18.37151 -18.05293 -17.54510 -16.82360 -16.33249 -16.15920
-16.14099 -15.37256 -15.10037 -15.01859 -14.58856 -14.42712 -14.37779 -14.02583
-13.40477 -13.20217 -13.12874 -12.91069 -12.87440 -12.75793 -12.57231 -12.45271
-12.22776 -12.13550 -12.10369 -11.97903 -11.67746 -11.57733 -11.34437 -10.64965
-10.00267 -9.92521 -9.66770 -8.24393 -5.56668 -0.35284 -0.12178 0.02446
0.95175 1.44167 1.51825 1.59843 2.16726 2.21645 2.39144 2.68841
2.92497 3.20888 3.50808 3.71471 3.92187 4.11931 4.28758 4.36615
4.38149 4.42890 4.55970 4.66913 4.73952 4.85904 4.98999 5.00477
5.01089 5.14934 5.33528 5.43224 5.57731 5.88707 6.03376 6.16986
6.63798 7.04698 7.44321 8.73719
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.015545 B = 0.006235 C = 0.005341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1800.781994 B = 4489.578736 C = 5240.828711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.136 3.864
3 N -0.835 5.835
4 C -0.302 4.302
5 H 0.105 0.895
6 C 0.029 3.971
7 N -0.844 5.844
8 Si 0.921 3.079
9 H -0.267 1.267
10 H -0.273 1.273
11 H -0.282 1.282
12 S 2.618 3.382
13 O -0.999 6.999
14 O -0.995 6.995
15 C -0.726 4.726
16 C 0.011 3.989
17 C -0.219 4.219
18 C 0.183 3.817
19 O -0.320 6.320
20 C 0.010 3.990
21 C -0.179 4.179
22 C 0.075 3.925
23 Cl -0.037 7.037
24 H 0.067 0.933
25 H 0.060 0.940
26 H 0.023 0.977
27 H 0.092 0.908
28 H 0.046 0.954
29 H 0.272 0.728
30 H 0.158 0.842
31 H 0.178 0.822
32 H 0.072 0.928
33 H 0.127 0.873
34 H 0.073 0.927
35 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.544 -5.108 9.274 15.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.011 3.989
3 N -0.664 5.664
4 C -0.438 4.438
5 H 0.122 0.878
6 C -0.179 4.179
7 N -0.483 5.483
8 Si 0.745 3.255
9 H -0.191 1.191
10 H -0.199 1.199
11 H -0.208 1.208
12 S 2.712 3.288
13 O -0.989 6.989
14 O -0.985 6.985
15 C -0.809 4.809
16 C -0.008 4.008
17 C -0.238 4.238
18 C 0.136 3.864
19 O -0.232 6.232
20 C -0.084 4.084
21 C -0.199 4.199
22 C 0.047 3.953
23 Cl -0.008 7.008
24 H 0.086 0.914
25 H 0.079 0.921
26 H 0.042 0.958
27 H 0.110 0.890
28 H 0.064 0.936
29 H 0.082 0.918
30 H 0.175 0.825
31 H 0.195 0.805
32 H 0.090 0.910
33 H 0.145 0.855
34 H 0.091 0.909
35 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 11.176 -4.559 9.578 15.409
hybrid contribution 0.820 0.018 -1.014 1.304
sum 11.996 -4.540 8.565 15.423
Atomic orbital electron populations
1.21923 0.96147 1.00736 1.00581 1.21222 0.95045 0.81924 1.00726
1.53373 1.68814 1.23401 1.20850 1.19408 1.46815 0.94766 0.82848
0.87786 1.25499 0.96090 0.96352 0.99945 1.70295 1.27568 1.23146
1.27330 0.86003 0.80232 0.79024 0.80216 1.19139 1.19873 1.20765
1.05833 0.75624 0.74236 0.73070 1.93394 1.65098 1.79970 1.60409
1.93405 1.87736 1.32582 1.84752 1.31591 1.25560 1.16987 1.06774
1.20957 0.98677 0.89368 0.91787 1.21731 0.91496 1.07021 1.03570
1.18992 0.84730 0.90742 0.91957 1.86094 1.23507 1.68241 1.45395
1.23566 1.05848 0.94876 0.84065 1.20435 0.95797 1.04465 0.99231
1.20355 0.93717 0.92536 0.88736 1.98483 1.95885 1.70668 1.35760
0.91433 0.92141 0.95760 0.88976 0.93555 0.91751 0.82473 0.80462
0.90960 0.85453 0.90863 0.82624
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 60.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.89 9.70 71.98 0.70 -5.19 16
2 C 0.14 6.12 5.29 86.38 0.46 6.58 16
3 N -0.83 -40.32 2.90 -343.45 -1.00 -41.32 16
4 C -0.30 -15.30 7.27 84.03 0.61 -14.69 16
5 H 0.10 5.51 6.12 -2.91 -0.02 5.49 16
6 C 0.03 1.42 5.01 84.86 0.43 1.84 16
7 N -0.84 -40.95 8.46 21.65 0.18 -40.77 16
8 Si 0.92 39.36 29.65 68.60 2.03 41.39 16
9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
11 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16
12 S 2.62 122.02 5.01 -56.49 -0.28 121.73 16
13 O -1.00 -47.39 15.90 -128.00 -2.04 -49.42 16
14 O -0.99 -51.42 15.15 -128.00 -1.94 -53.36 16
15 C -0.73 -28.66 5.91 22.31 0.13 -28.53 16
16 C 0.01 0.37 9.54 22.25 0.21 0.58 16
17 C -0.22 -5.47 9.04 22.37 0.20 -5.27 16
18 C 0.18 4.92 6.69 22.50 0.15 5.07 16
19 O -0.32 -6.94 10.50 -92.44 -0.97 -7.91 16
20 C 0.01 0.12 9.81 113.37 1.11 1.23 16
21 C -0.18 -5.69 9.77 22.39 0.22 -5.47 16
22 C 0.07 2.87 6.30 22.31 0.14 3.01 16
23 Cl -0.04 -1.56 23.41 -2.72 -0.06 -1.62 16
24 H 0.07 3.25 6.47 -2.39 -0.02 3.23 16
25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
26 H 0.02 1.05 7.82 -2.39 -0.02 1.03 16
27 H 0.09 4.31 5.71 -2.39 -0.01 4.29 16
28 H 0.05 1.87 7.84 -2.39 -0.02 1.85 16
29 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16
30 H 0.16 4.59 7.33 -2.91 -0.02 4.57 16
31 H 0.18 2.81 6.30 -2.91 -0.02 2.79 16
32 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16
33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16
34 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16
35 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16
Total: -1.00 -62.55 312.19 1.42 -61.13
By element:
Atomic # 1 Polarization: 9.86 SS G_CDS: 1.13 Total: 10.99 kcal
Atomic # 6 Polarization: -45.20 SS G_CDS: 4.36 Total: -40.84 kcal
Atomic # 7 Polarization: -81.28 SS G_CDS: -0.81 Total: -82.09 kcal
Atomic # 8 Polarization: -105.74 SS G_CDS: -4.94 Total: -110.69 kcal
Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal
Atomic # 16 Polarization: 122.02 SS G_CDS: -0.28 Total: 121.73 kcal
Atomic # 17 Polarization: -1.56 SS G_CDS: -0.06 Total: -1.62 kcal
Total: -62.55 1.42 -61.13 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000341464622.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.607 kcal
(2) G-P(sol) polarization free energy of solvation -62.550 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.157 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.59 seconds