Wall clock time and date at job start Tue Mar 31 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48506 * 109.47211 * 269.99855 * 3 2 1 5 5 H 1.48503 * 109.47160 * 30.00011 * 3 2 1 6 6 H 1.48502 * 109.47433 * 149.99884 * 3 2 1 7 7 C 1.38798 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00529 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99961 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47090 * 180.02562 * 10 9 7 12 12 N 1.31126 * 126.55484 * 90.01609 * 11 10 9 13 13 C 1.34492 * 105.61910 * 179.97438 * 12 11 10 14 14 C 1.50703 * 126.29014 * 179.97438 * 13 12 11 15 15 S 1.81397 * 109.47327 * 270.05279 * 14 13 12 16 16 O 1.42095 * 110.54312 * 291.62541 * 15 14 13 17 17 O 1.42103 * 110.54082 * 68.37368 * 15 14 13 18 18 N 1.65598 * 104.44872 * 179.97438 * 15 14 13 19 19 C 1.46496 * 119.99967 * 65.00169 * 18 15 14 20 20 C 1.53001 * 117.49907 * 213.61904 * 19 18 15 21 21 C 1.53006 * 60.00279 * 252.51004 * 20 19 18 22 22 N 1.29948 * 107.42516 * 0.02562 * 13 12 11 23 23 O 1.21303 * 110.24669 * 359.97438 * 22 13 12 24 24 H 0.97002 * 119.99754 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46748 * 60.00102 * 10 9 7 26 26 H 1.08999 * 109.47187 * 300.00322 * 10 9 7 27 27 H 1.09002 * 109.46770 * 30.05485 * 14 13 12 28 28 H 1.08999 * 109.47188 * 150.05087 * 14 13 12 29 29 H 0.97001 * 120.00240 * 244.99298 * 18 15 14 30 30 H 1.09003 * 115.55439 * 359.32819 * 19 18 15 31 31 H 1.09002 * 117.49905 * 0.02562 * 20 19 18 32 32 H 1.09003 * 117.50227 * 145.02059 * 20 19 18 33 33 H 1.08996 * 117.49985 * 252.51425 * 21 20 19 34 34 H 1.09002 * 117.51477 * 107.47973 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9873 -5.3027 0.0018 12 7 1.7132 -6.0343 -1.0514 13 6 1.2733 -7.2108 -0.5704 14 6 0.8284 -8.3975 -1.3859 15 16 -0.9515 -8.2734 -1.7130 16 8 -1.6922 -8.4446 -0.5126 17 8 -1.2224 -7.1910 -2.5930 18 7 -1.3025 -9.6229 -2.6063 19 6 -1.1620 -10.9534 -2.0093 20 6 -0.7203 -12.0960 -2.9260 21 6 -2.1668 -12.0271 -2.4321 22 7 1.3013 -7.1359 0.7266 23 8 1.7086 -6.0479 1.0756 24 1 -0.4850 0.8401 -0.0004 25 1 3.1250 -3.7310 0.8908 26 1 3.1237 -3.7318 -0.8891 27 1 1.3714 -8.4129 -2.3310 28 1 1.0334 -9.3149 -0.8341 29 1 -1.6011 -9.5325 -3.5247 30 1 -0.8109 -10.9711 -0.9775 31 1 -0.5338 -11.8577 -3.9732 32 1 -0.0783 -12.8656 -2.4975 33 1 -2.4764 -12.7512 -1.6786 34 1 -2.9325 -11.7434 -3.1542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350974495.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:26 Heat of formation + Delta-G solvation = 27.747185 kcal Electronic energy + Delta-G solvation = -21511.016251 eV Core-core repulsion = 17895.145456 eV Total energy + Delta-G solvation = -3615.870795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.049 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.53624 -38.24306 -37.27440 -36.18846 -36.09754 -33.78117 -32.56707 -32.56042 -30.12485 -28.55337 -25.64056 -23.67412 -22.83917 -22.56352 -21.88654 -19.90495 -18.45737 -18.07985 -17.80961 -17.27291 -16.98104 -16.38700 -15.59943 -15.22760 -14.91307 -14.81558 -14.47016 -14.31911 -13.54438 -13.30201 -13.21526 -12.84454 -12.61589 -12.36048 -12.26589 -12.25616 -12.19140 -12.09362 -11.99714 -11.27776 -11.16731 -11.11374 -10.96491 -10.91566 -10.82087 -10.26895 -9.61092 -9.45431 -9.18203 -8.56467 -6.74695 -6.34958 -4.10600 -0.22268 1.16909 2.15117 2.28335 2.87189 3.11899 3.18136 3.19466 3.25417 3.33428 3.37404 3.61031 3.70742 4.05034 4.10360 4.29992 4.38136 4.44743 4.46685 4.69853 4.72853 5.02225 5.09687 5.18835 5.32115 5.43015 5.58085 5.63022 5.69392 5.70371 6.02079 6.03656 6.49553 7.48664 8.16932 8.23067 9.10484 10.72991 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.031197 B = 0.002727 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.298829 B =10263.559013 C =10714.851272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.081 0.919 9 S -0.078 6.078 10 C -0.047 4.047 11 C 0.237 3.763 12 N -0.469 5.469 13 C 0.156 3.844 14 C -0.533 4.533 15 S 2.618 3.382 16 O -0.934 6.934 17 O -0.927 6.927 18 N -1.087 6.087 19 C 0.075 3.925 20 C -0.191 4.191 21 C -0.183 4.183 22 N -0.369 5.369 23 O 0.092 5.908 24 H 0.271 0.729 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.421 0.579 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 -23.188 -4.991 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.136 4.136 3 Si 0.752 3.248 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.675 4.675 8 H 0.099 0.901 9 S 0.147 5.853 10 C -0.195 4.195 11 C 0.017 3.983 12 N -0.204 5.204 13 C -0.118 4.118 14 C -0.660 4.660 15 S 2.706 3.294 16 O -0.923 6.923 17 O -0.917 6.917 18 N -0.845 5.845 19 C -0.034 4.034 20 C -0.230 4.230 21 C -0.223 4.223 22 N -0.076 5.076 23 O 0.030 5.970 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.256 0.744 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.520 -23.371 -4.455 23.798 hybrid contribution 2.401 0.965 -0.529 2.641 sum 1.881 -22.406 -4.984 23.031 Atomic orbital electron populations 1.70000 1.06034 1.27911 1.46066 1.25039 0.95133 0.99266 0.94122 0.86053 0.79341 0.80961 0.78494 1.20107 1.20673 1.19479 1.22694 0.94852 0.89925 1.60052 0.90066 1.85356 1.04676 0.98281 1.96974 1.22082 1.04715 0.85400 1.07335 1.28354 0.93327 0.96962 0.79660 1.71968 1.18310 1.01572 1.28563 1.24164 1.04338 0.94816 0.88471 1.29027 1.28794 0.99875 1.08310 1.05156 0.76468 0.73037 0.74743 1.93649 1.65728 1.85014 1.47914 1.93691 1.82586 1.50682 1.64731 1.55349 1.82429 1.19069 1.27603 1.21418 1.05464 0.79243 0.97234 1.23468 0.98102 1.00845 1.00608 1.23367 0.93162 1.01494 1.04241 1.74647 1.17231 1.01128 1.14620 1.85327 1.58427 1.17557 1.35716 0.91878 0.87477 0.86696 0.81921 0.82831 0.74426 0.84452 0.88078 0.87727 0.87678 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.22 55.49 0.73 -24.41 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.53 -14.15 9.50 30.94 0.29 -13.85 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.08 -1.99 21.42 -107.50 -2.30 -4.29 16 10 C -0.05 -0.89 6.30 36.00 0.23 -0.66 16 11 C 0.24 4.42 7.77 -13.06 -0.10 4.32 16 12 N -0.47 -8.76 11.55 -9.87 -0.11 -8.87 16 13 C 0.16 2.56 7.48 -156.37 -1.17 1.39 16 14 C -0.53 -5.78 6.70 36.01 0.24 -5.54 16 15 S 2.62 33.05 5.42 -107.50 -0.58 32.46 16 16 O -0.93 -14.88 17.82 -57.54 -1.03 -15.90 16 17 O -0.93 -15.50 18.08 -57.54 -1.04 -16.54 16 18 N -1.09 -8.64 5.93 -4.89 -0.03 -8.67 16 19 C 0.07 0.48 6.35 -67.93 -0.43 0.05 16 20 C -0.19 -0.85 10.46 -26.73 -0.28 -1.13 16 21 C -0.18 -0.99 10.46 -26.72 -0.28 -1.27 16 22 N -0.37 -6.46 12.16 30.90 0.38 -6.09 16 23 O 0.09 1.67 11.31 18.10 0.20 1.87 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 26 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 27 H 0.16 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.15 1.11 8.14 -51.92 -0.42 0.68 16 29 H 0.42 2.64 8.92 -34.47 -0.31 2.33 16 30 H 0.14 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -36.56 336.55 -8.98 -45.54 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.65 Total: -0.99 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.59 Total: -14.76 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.97 Total: -48.04 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.86 Total: -30.57 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 31.06 SS G_CDS: -2.89 Total: 28.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.56 -8.98 -45.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350974495.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.284 kcal (2) G-P(sol) polarization free energy of solvation -36.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds