Wall clock time and date at job start Tue Mar 31 2020 12:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31898 * 124.30859 * 2 1 4 4 C 1.45058 * 114.81487 * 180.02562 * 3 2 1 5 5 C 1.39738 * 112.00320 * 359.97438 * 4 3 2 6 6 N 1.33920 * 119.11002 * 180.02562 * 5 4 3 7 7 C 1.31301 * 121.05304 * 359.97438 * 6 5 4 8 8 N 1.32056 * 122.19544 * 359.71854 * 7 6 5 9 9 C 1.32563 * 121.17289 * 0.57695 * 8 7 6 10 10 S 1.76197 * 120.53640 * 179.71133 * 9 8 7 11 11 C 1.81002 * 100.00219 * 359.72647 * 10 9 8 12 12 C 1.52994 * 109.47514 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.46970 * 304.99831 * 12 11 10 14 14 C 1.47205 * 109.47251 * 64.99464 * 12 11 10 15 15 N 7.77673 * 117.85739 * 18.91913 * 2 1 3 16 16 C 1.52997 * 109.47404 * 184.99880 * 12 11 10 17 17 C 1.50701 * 109.47212 * 174.99684 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 S 1.75364 * 124.30575 * 179.97438 * 2 1 3 26 26 H 1.09009 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46980 * 300.01970 * 1 2 3 28 28 H 1.08998 * 109.47127 * 60.03114 * 1 2 3 29 29 H 1.07998 * 122.59522 * 0.02562 * 3 2 1 30 30 H 1.08005 * 118.90224 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46827 * 59.99361 * 11 10 9 32 32 H 1.09009 * 109.46789 * 300.00025 * 11 10 9 33 33 H 1.09002 * 109.47153 * 54.99686 * 16 12 11 34 34 H 1.09001 * 109.46832 * 294.99876 * 16 12 11 35 35 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.0895 0.0000 4 6 3.6811 0.8502 -0.0006 5 6 3.9838 -0.5140 -0.0005 6 7 5.2672 -0.8966 -0.0004 7 6 6.2376 -0.0121 -0.0010 8 7 6.0049 1.2878 -0.0072 9 6 4.7675 1.7633 -0.0016 10 16 4.4763 3.5011 -0.0023 11 6 6.1824 4.1057 -0.0030 12 6 6.1813 5.6357 -0.0030 13 1 5.5913 5.9986 -0.8447 14 6 5.5948 6.1260 1.2550 15 7 5.1408 6.5041 2.2293 16 6 7.6179 6.1467 -0.1292 17 6 7.6077 7.6486 -0.2528 18 1 6.6705 8.1850 -0.2420 19 6 8.7952 8.3380 -0.3787 20 7 9.9365 7.6848 -0.3914 21 14 8.7826 10.1997 -0.5312 22 1 7.3816 10.6904 -0.4894 23 1 9.5485 10.7936 0.5940 24 1 9.4078 10.5951 -1.8188 25 16 2.4954 -1.4486 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5133 -0.8902 29 1 1.8268 2.0829 0.0004 30 1 7.2604 -0.3593 -0.0014 31 1 6.6963 3.7423 -0.8929 32 1 6.6967 3.7431 0.8871 33 1 8.0815 5.7124 -1.0150 34 1 8.1850 5.8588 0.7560 35 1 10.7719 8.1698 -0.4803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447161977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:35 Heat of formation + Delta-G solvation = 73.278118 kcal Electronic energy + Delta-G solvation = -20135.226281 eV Core-core repulsion = 16964.471870 eV Total energy + Delta-G solvation = -3170.754411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.051 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04921 -36.95537 -36.76849 -34.07442 -33.81334 -32.30738 -32.09382 -28.03313 -27.69772 -25.47999 -24.47940 -23.42588 -21.93686 -21.15533 -19.12479 -17.94389 -17.05681 -16.71975 -16.47124 -15.89850 -15.50132 -15.15580 -14.72391 -14.22164 -14.09758 -13.96561 -13.86801 -13.17362 -13.02701 -12.81009 -12.64497 -12.28524 -12.12328 -11.96180 -11.54879 -11.44658 -11.39066 -11.27762 -11.19843 -11.01614 -10.72750 -10.54029 -10.35679 -9.67161 -9.43524 -9.36692 -9.31267 -8.63777 -8.52421 -7.81543 -6.16153 -4.20291 0.09507 0.56518 0.78393 1.18016 1.52459 1.83029 2.04486 3.24784 3.33374 3.37330 3.39584 3.41717 3.50247 3.95724 3.98490 4.24117 4.35335 4.54761 4.57780 4.63418 4.90469 5.12048 5.16801 5.18088 5.22203 5.38497 5.45439 5.58932 5.82103 5.85253 5.89874 6.16121 6.28630 6.49509 7.33027 7.40735 7.73101 7.77979 8.12435 8.26970 8.83879 9.45770 10.94553 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.002708 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.461976 B =10336.149005 C =11096.618807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.167 4.167 3 C -0.099 4.099 4 C -0.165 4.165 5 C 0.099 3.901 6 N -0.504 5.504 7 C 0.329 3.671 8 N -0.526 5.526 9 C 0.216 3.784 10 S -0.029 6.029 11 C -0.093 4.093 12 C 0.021 3.979 13 H 0.112 0.888 14 C 0.233 3.767 15 N -0.457 5.457 16 C 0.038 3.962 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 S 0.160 5.840 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.207 0.793 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.456 -18.762 -2.385 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.284 4.284 3 C -0.129 4.129 4 C -0.185 4.185 5 C -0.154 4.154 6 N -0.223 5.223 7 C 0.035 3.965 8 N -0.245 5.245 9 C -0.049 4.049 10 S 0.214 5.786 11 C -0.242 4.242 12 C -0.003 4.003 13 H 0.130 0.870 14 C -0.084 4.084 15 N -0.133 5.133 16 C -0.002 4.002 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.208 1.208 25 S 0.419 5.581 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.172 0.828 30 H 0.223 0.777 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.424 -19.352 -0.929 25.399 hybrid contribution 1.260 1.895 -0.433 2.316 sum -15.165 -17.457 -1.362 23.164 Atomic orbital electron populations 1.20419 0.86687 1.03369 1.03758 1.24068 1.00630 0.95765 1.07902 1.20560 0.89625 1.00194 1.02558 1.20170 0.94812 0.93747 1.09757 1.23783 0.97670 0.93976 0.99949 1.68075 0.97762 1.39222 1.17211 1.24963 0.98776 0.83683 0.89120 1.68734 1.19958 1.17548 1.18305 1.23687 0.89953 0.99831 0.91472 1.86034 1.14208 0.90948 1.87437 1.23896 0.93622 0.97917 1.08765 1.19082 1.02493 0.89808 0.88887 0.87011 1.29143 0.92029 0.92693 0.94529 1.81173 1.11135 1.09301 1.11737 1.19225 0.85209 0.96560 0.99220 1.21133 0.92983 0.91219 1.51427 0.92309 1.24947 0.95473 0.98657 0.94802 1.69943 0.97536 1.35725 1.49521 0.86515 0.78303 0.85387 0.77766 1.19633 1.20923 1.20762 1.84206 0.90758 1.05927 1.77175 0.91020 0.89881 0.89849 0.82805 0.77658 0.86435 0.87853 0.93829 0.95164 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.32 36.01 0.37 -0.07 16 2 C -0.17 -1.44 6.38 -36.21 -0.23 -1.67 16 3 C -0.10 -1.03 9.88 -38.79 -0.38 -1.41 16 4 C -0.17 -2.12 6.04 -105.23 -0.64 -2.76 16 5 C 0.10 1.26 7.69 -16.08 -0.12 1.14 16 6 N -0.50 -6.63 10.47 -13.32 -0.14 -6.77 16 7 C 0.33 4.00 12.26 -92.35 -1.13 2.87 16 8 N -0.53 -7.23 9.27 -12.93 -0.12 -7.35 16 9 C 0.22 2.98 7.07 -15.83 -0.11 2.87 16 10 S -0.03 -0.39 21.24 -107.50 -2.28 -2.67 16 11 C -0.09 -1.36 4.29 37.15 0.16 -1.20 16 12 C 0.02 0.37 2.21 -93.41 -0.21 0.16 16 13 H 0.11 1.80 8.14 -51.92 -0.42 1.38 16 14 C 0.23 4.63 13.32 -20.65 -0.27 4.35 16 15 N -0.46 -9.84 18.56 42.29 0.78 -9.05 16 16 C 0.04 0.84 4.42 -27.88 -0.12 0.72 16 17 C -0.53 -13.65 8.60 -34.44 -0.30 -13.94 16 18 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 S 0.16 1.54 23.19 -107.50 -2.49 -0.96 16 26 H 0.07 0.30 8.13 -51.92 -0.42 -0.12 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.21 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.12 1.62 8.13 -51.92 -0.42 1.19 16 32 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -30.91 341.95 -10.23 -41.14 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.76 Total: -3.82 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.09 Total: -7.34 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 1.26 Total: -47.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -4.78 Total: -3.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.91 -10.23 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447161977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.415 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds