Wall clock time and date at job start Tue Mar 31 2020 12:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31898 * 124.30859 * 2 1 4 4 C 1.45058 * 114.81487 * 180.02562 * 3 2 1 5 5 C 1.39738 * 112.00320 * 359.97438 * 4 3 2 6 6 N 1.33920 * 119.11002 * 180.02562 * 5 4 3 7 7 C 1.31301 * 121.05304 * 359.97438 * 6 5 4 8 8 N 1.32056 * 122.19544 * 359.71854 * 7 6 5 9 9 C 1.32563 * 121.17289 * 0.57695 * 8 7 6 10 10 S 1.76197 * 120.53640 * 179.71133 * 9 8 7 11 11 C 1.81002 * 100.00219 * 359.72647 * 10 9 8 12 12 C 1.52994 * 109.47514 * 180.02562 * 11 10 9 13 13 H 1.09008 * 109.46970 * 304.99831 * 12 11 10 14 14 C 1.47205 * 109.47251 * 64.99464 * 12 11 10 15 15 N 7.77673 * 117.85739 * 18.91913 * 2 1 3 16 16 C 1.52997 * 109.47404 * 184.99880 * 12 11 10 17 17 C 1.50701 * 109.47212 * 174.99684 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 S 1.75364 * 124.30575 * 179.97438 * 2 1 3 26 26 H 1.09009 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46980 * 300.01970 * 1 2 3 28 28 H 1.08998 * 109.47127 * 60.03114 * 1 2 3 29 29 H 1.07998 * 122.59522 * 0.02562 * 3 2 1 30 30 H 1.08005 * 118.90224 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46827 * 59.99361 * 11 10 9 32 32 H 1.09009 * 109.46789 * 300.00025 * 11 10 9 33 33 H 1.09002 * 109.47153 * 54.99686 * 16 12 11 34 34 H 1.09001 * 109.46832 * 294.99876 * 16 12 11 35 35 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2504 1.0895 0.0000 4 6 3.6811 0.8502 -0.0006 5 6 3.9838 -0.5140 -0.0005 6 7 5.2672 -0.8966 -0.0004 7 6 6.2376 -0.0121 -0.0010 8 7 6.0049 1.2878 -0.0072 9 6 4.7675 1.7633 -0.0016 10 16 4.4763 3.5011 -0.0023 11 6 6.1824 4.1057 -0.0030 12 6 6.1813 5.6357 -0.0030 13 1 5.5913 5.9986 -0.8447 14 6 5.5948 6.1260 1.2550 15 7 5.1408 6.5041 2.2293 16 6 7.6179 6.1467 -0.1292 17 6 7.6077 7.6486 -0.2528 18 1 6.6705 8.1850 -0.2420 19 6 8.7952 8.3380 -0.3787 20 7 9.9365 7.6848 -0.3914 21 14 8.7826 10.1997 -0.5312 22 1 7.3816 10.6904 -0.4894 23 1 9.5485 10.7936 0.5940 24 1 9.4078 10.5951 -1.8188 25 16 2.4954 -1.4486 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8898 28 1 -0.3633 0.5133 -0.8902 29 1 1.8268 2.0829 0.0004 30 1 7.2604 -0.3593 -0.0014 31 1 6.6963 3.7423 -0.8929 32 1 6.6967 3.7431 0.8871 33 1 8.0815 5.7124 -1.0150 34 1 8.1850 5.8588 0.7560 35 1 10.7719 8.1698 -0.4803 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447161977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:35 Heat of formation + Delta-G solvation = 57.829006 kcal Electronic energy + Delta-G solvation = -20135.896205 eV Core-core repulsion = 16964.471870 eV Total energy + Delta-G solvation = -3171.424335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 319.051 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96105 -38.42651 -37.67677 -35.76458 -34.81643 -34.13449 -32.82326 -29.64354 -28.51666 -26.40584 -25.95163 -24.49407 -23.63988 -21.92579 -20.06202 -18.86939 -18.60979 -18.41196 -17.40626 -17.00758 -16.62427 -16.44204 -15.97499 -15.44584 -15.31446 -14.87066 -14.63202 -14.54512 -14.21628 -14.00928 -13.83869 -13.70163 -13.25130 -13.17750 -13.03367 -12.86174 -12.71020 -12.41891 -12.37340 -12.32026 -12.15214 -11.98486 -11.83539 -11.35127 -11.19506 -10.56538 -10.41461 -10.19435 -9.45073 -8.79899 -8.20256 -6.28866 -0.77870 -0.40701 -0.04328 0.17327 0.72654 0.91305 1.04270 1.40116 1.43588 1.53519 1.83104 1.88003 2.41727 2.45568 3.03701 3.11271 3.14079 3.16990 3.38856 3.65792 3.82308 3.92222 4.09855 4.37022 4.49470 4.52055 4.67918 4.77675 4.83006 4.85161 5.02337 5.05970 5.25823 5.44873 5.55623 5.55725 5.77213 6.15325 6.66149 6.79278 6.84910 7.40056 8.90806 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.025861 B = 0.002708 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.461976 B =10336.149005 C =11096.618807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.148 4.148 3 C -0.124 4.124 4 C -0.173 4.173 5 C 0.068 3.932 6 N -0.515 5.515 7 C 0.319 3.681 8 N -0.540 5.540 9 C 0.197 3.803 10 S -0.013 6.013 11 C -0.087 4.087 12 C 0.033 3.967 13 H 0.133 0.867 14 C 0.244 3.756 15 N -0.487 5.487 16 C 0.043 3.957 17 C -0.539 4.539 18 H 0.058 0.942 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.949 3.051 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.273 1.273 25 S 0.190 5.810 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.235 0.765 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.006 0.994 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 -19.442 -2.966 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.265 4.265 3 C -0.153 4.153 4 C -0.193 4.193 5 C -0.184 4.184 6 N -0.233 5.233 7 C 0.025 3.975 8 N -0.261 5.261 9 C -0.068 4.068 10 S 0.229 5.771 11 C -0.237 4.237 12 C 0.010 3.990 13 H 0.151 0.849 14 C -0.073 4.073 15 N -0.164 5.164 16 C 0.003 3.997 17 C -0.577 4.577 18 H 0.076 0.924 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.775 3.225 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.199 1.199 25 S 0.449 5.551 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.182 0.818 30 H 0.251 0.749 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.465 -20.039 -1.514 27.291 hybrid contribution 1.781 1.961 -0.243 2.661 sum -16.684 -18.078 -1.758 24.663 Atomic orbital electron populations 1.20618 0.83964 1.04805 1.05056 1.24565 1.02216 0.94775 1.04922 1.20676 0.88609 1.01350 1.04645 1.20443 0.95819 0.93687 1.09370 1.24301 0.98506 0.94949 1.00642 1.68133 0.98241 1.39578 1.17371 1.25545 0.99941 0.83230 0.88820 1.68728 1.20167 1.18416 1.18761 1.23768 0.90588 0.99871 0.92562 1.85837 1.12079 0.91185 1.88015 1.23662 0.95295 0.95727 1.08996 1.18951 0.99741 0.91728 0.88618 0.84896 1.29520 0.91372 0.91842 0.94547 1.81171 1.12164 1.10405 1.12665 1.19022 0.87823 0.94990 0.97855 1.21545 0.92797 0.93134 1.50244 0.92382 1.25703 0.95415 1.02623 0.94940 1.70038 0.98038 1.37211 1.50922 0.85632 0.78315 0.80783 0.77784 1.19171 1.21240 1.19881 1.84107 0.89017 1.05791 1.76147 0.89537 0.88590 0.88331 0.81764 0.74865 0.85389 0.88601 0.94050 0.97603 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.32 71.24 0.74 0.12 16 2 C -0.15 -2.20 6.38 24.85 0.16 -2.04 16 3 C -0.12 -2.36 9.88 23.18 0.23 -2.13 16 4 C -0.17 -4.32 6.04 -20.26 -0.12 -4.45 16 5 C 0.07 1.68 7.69 84.74 0.65 2.34 16 6 N -0.51 -13.29 10.47 -196.05 -2.05 -15.34 16 7 C 0.32 7.63 12.26 180.95 2.22 9.85 16 8 N -0.54 -14.75 9.27 -194.83 -1.81 -16.55 16 9 C 0.20 5.36 7.07 85.49 0.60 5.96 16 10 S -0.01 -0.34 21.24 -56.49 -1.20 -1.54 16 11 C -0.09 -2.53 4.29 71.98 0.31 -2.22 16 12 C 0.03 1.13 2.21 -12.60 -0.03 1.10 16 13 H 0.13 4.08 8.14 -2.38 -0.02 4.06 16 14 C 0.24 9.58 13.32 89.40 1.19 10.77 16 15 N -0.49 -20.85 18.56 20.05 0.37 -20.48 16 16 C 0.04 1.93 4.42 29.85 0.13 2.06 16 17 C -0.54 -27.73 8.60 25.60 0.22 -27.51 16 18 H 0.06 2.94 7.59 -2.91 -0.02 2.92 16 19 C 0.01 0.67 5.46 84.66 0.46 1.13 16 20 N -0.92 -52.15 13.29 21.45 0.28 -51.87 16 21 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 S 0.19 3.30 23.19 -56.49 -1.31 1.99 16 26 H 0.09 0.40 8.13 -2.38 -0.02 0.38 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.24 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.13 3.44 8.13 -2.39 -0.02 3.42 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -66.07 341.95 4.20 -61.86 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.13 Total: 2.28 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.76 Total: -5.01 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.20 Total: -104.24 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.51 Total: 0.45 kcal Total: -66.07 4.20 -61.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447161977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.693 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds