Wall clock time and date at job start Tue Mar 31 2020 12:11:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42901 * 113.99816 * 2 1
4 4 C 1.53003 * 109.47097 * 180.02562 * 3 2 1
5 5 S 1.81400 * 109.47113 * 180.02562 * 4 3 2
6 6 O 1.42100 * 110.54561 * 68.37618 * 5 4 3
7 7 O 1.42102 * 110.54592 * 291.62684 * 5 4 3
8 8 N 1.65601 * 104.45201 * 180.02562 * 5 4 3
9 9 C 1.38765 * 119.99858 * 60.08455 * 8 5 4
10 10 C 1.38747 * 120.28403 * 35.48568 * 9 8 5
11 11 C 1.38156 * 120.03870 * 179.97438 * 10 9 8
12 12 C 1.39015 * 120.60978 * 359.97438 * 11 10 9
13 13 Cl 1.73601 * 119.70975 * 180.02562 * 12 11 10
14 14 C 1.36528 * 120.57680 * 359.79060 * 12 11 10
15 15 C 1.40721 * 119.93724 * 0.44351 * 14 12 11
16 16 C 1.41042 * 120.29786 * 179.81211 * 15 14 12
17 17 H 1.08010 * 119.99942 * 209.13341 * 16 15 14
18 18 C 1.39921 * 120.00374 * 29.40536 * 16 15 14
19 19 N 1.30884 * 119.99485 * 10.34588 * 18 16 15
20 20 Si 1.86793 * 120.00454 * 190.34452 * 18 16 15
21 21 H 1.48499 * 109.47139 * 0.02562 * 20 18 16
22 22 H 1.48498 * 109.47223 * 120.00217 * 20 18 16
23 23 H 1.48501 * 109.47471 * 240.00274 * 20 18 16
24 24 H 1.09002 * 109.46971 * 299.99419 * 1 2 3
25 25 H 1.09002 * 109.47696 * 59.99509 * 1 2 3
26 26 H 1.08999 * 109.47033 * 179.97438 * 1 2 3
27 27 H 1.09003 * 109.46974 * 60.00128 * 3 2 1
28 28 H 1.08997 * 109.47253 * 300.00456 * 3 2 1
29 29 H 1.08999 * 109.46658 * 60.00726 * 4 3 2
30 30 H 1.08997 * 109.47392 * 300.00311 * 4 3 2
31 31 H 0.96993 * 120.00160 * 240.08853 * 8 5 4
32 32 H 1.08002 * 119.98067 * 359.97438 * 10 9 8
33 33 H 1.07996 * 119.69311 * 180.02562 * 11 10 9
34 34 H 1.07997 * 120.03395 * 180.25908 * 14 12 11
35 35 H 0.97001 * 119.99937 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 16 4.2732 2.8419 0.0001
6 8 4.0285 3.4961 1.2376
7 8 4.0275 3.4977 -1.2363
8 7 5.9062 2.5673 -0.0014
9 6 6.4902 1.8620 -1.0440
10 6 6.0105 2.0017 -2.3384
11 6 6.5961 1.2975 -3.3728
12 6 7.6675 0.4453 -3.1315
13 17 8.3861 -0.4277 -4.4487
14 6 8.1626 0.2926 -1.8683
15 6 7.5810 0.9946 -0.7964
16 6 8.0839 0.8395 0.5122
17 1 7.4267 0.9592 1.3610
18 6 9.4353 0.5362 0.7110
19 7 10.2736 0.5951 -0.2924
20 14 10.0429 0.0473 2.4083
21 1 8.9054 0.0559 3.3628
22 1 10.6295 -1.3157 2.3505
23 1 11.0768 1.0123 2.8610
24 1 -0.3633 0.5138 0.8901
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3633 -1.0277 -0.0005
27 1 1.6885 1.8464 0.8900
28 1 1.6884 1.8464 -0.8899
29 1 3.8566 0.6441 -0.8909
30 1 3.8574 0.6436 0.8890
31 1 6.4545 2.8993 0.7265
32 1 5.1788 2.6614 -2.5375
33 1 6.2185 1.4108 -4.3782
34 1 8.9980 -0.3686 -1.6915
35 1 11.2105 0.3852 -0.1545
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000451058900.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:46
Heat of formation + Delta-G solvation = -108.820593 kcal
Electronic energy + Delta-G solvation = -22583.113976 eV
Core-core repulsion = 18926.984700 eV
Total energy + Delta-G solvation = -3656.129276 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 319.048 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-38.40334 -38.07206 -36.83674 -35.75967 -35.65124 -34.12503 -33.58940 -31.91806
-29.94347 -28.03982 -26.68876 -25.46815 -23.46650 -21.69342 -20.97814 -18.93811
-17.74288 -17.46799 -16.97523 -16.55176 -16.30862 -15.73565 -15.43774 -14.97933
-14.84788 -14.74998 -13.89545 -13.63465 -13.10887 -12.90981 -12.66088 -12.32263
-12.18318 -11.91844 -11.79226 -11.74758 -11.59808 -11.51932 -11.41315 -11.22845
-11.16488 -10.75028 -10.64663 -10.35769 -10.16409 -9.89819 -9.74685 -9.49145
-9.32901 -7.75406 -7.25571 -6.92243 -4.65985 0.44390 2.41846 2.59747
2.96469 2.99311 3.00196 3.00690 3.23285 3.56331 3.75300 4.08930
4.33262 4.45598 4.60538 4.82633 5.02015 5.15524 5.16162 5.22083
5.46784 5.50592 5.80149 5.95124 6.20325 6.40196 6.67995 6.77067
6.91231 6.95717 7.08015 7.21969 7.57230 7.62580 7.79670 7.89993
8.22882 8.53551 8.56876 9.94650
Molecular weight = 319.05amu
Principal moments of inertia in cm(-1)
A = 0.010512 B = 0.005178 C = 0.004165
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2663.070291 B = 5406.692288 C = 6720.884972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.380 6.380
3 C 0.077 3.923
4 C -0.636 4.636
5 S 2.608 3.392
6 O -0.969 6.969
7 O -0.952 6.952
8 N -1.018 6.018
9 C 0.019 3.981
10 C -0.126 4.126
11 C -0.207 4.207
12 C -0.013 4.013
13 Cl -0.122 7.122
14 C -0.132 4.132
15 C 0.113 3.887
16 C -0.452 4.452
17 H 0.085 0.915
18 C 0.073 3.927
19 N -0.785 5.785
20 Si 0.913 3.087
21 H -0.259 1.259
22 H -0.271 1.271
23 H -0.272 1.272
24 H 0.043 0.957
25 H 0.044 0.956
26 H 0.088 0.912
27 H 0.062 0.938
28 H 0.064 0.936
29 H 0.145 0.855
30 H 0.141 0.859
31 H 0.422 0.578
32 H 0.141 0.859
33 H 0.107 0.893
34 H 0.136 0.864
35 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.880 -0.956 1.254 10.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.298 6.298
3 C -0.001 4.001
4 C -0.763 4.763
5 S 2.701 3.299
6 O -0.959 6.959
7 O -0.942 6.942
8 N -0.770 5.770
9 C -0.078 4.078
10 C -0.148 4.148
11 C -0.228 4.228
12 C -0.040 4.040
13 Cl -0.093 7.093
14 C -0.153 4.153
15 C 0.107 3.893
16 C -0.482 4.482
17 H 0.103 0.897
18 C -0.146 4.146
19 N -0.410 5.410
20 Si 0.737 3.263
21 H -0.182 1.182
22 H -0.196 1.196
23 H -0.197 1.197
24 H 0.062 0.938
25 H 0.063 0.937
26 H 0.107 0.893
27 H 0.080 0.920
28 H 0.082 0.918
29 H 0.164 0.836
30 H 0.159 0.841
31 H 0.260 0.740
32 H 0.159 0.841
33 H 0.125 0.875
34 H 0.154 0.846
35 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.053 -0.405 1.023 10.113
hybrid contribution 0.739 -0.757 0.881 1.377
sum -9.314 -1.162 1.905 9.577
Atomic orbital electron populations
1.22820 0.80908 1.03075 1.00258 1.87972 1.19735 1.26711 1.95423
1.22052 0.90316 0.86430 1.01283 1.30795 1.04377 1.27654 1.13488
1.05396 0.73770 0.76610 0.74162 1.93556 1.84489 1.72666 1.45212
1.93532 1.84649 1.71175 1.44854 1.52286 1.24182 1.68166 1.32329
1.17369 1.04589 1.00208 0.85658 1.21292 1.02211 1.00589 0.90711
1.20126 1.00256 1.04199 0.98242 1.20541 0.97129 0.98257 0.88088
1.98266 1.83960 1.76721 1.50378 1.20983 1.02404 1.02310 0.89594
1.17388 0.90476 0.87895 0.93538 1.19460 0.94135 1.41657 0.92922
0.89693 1.25959 0.96864 0.92536 0.99258 1.69785 1.04977 1.33622
1.32595 0.86158 0.79548 0.79073 0.81488 1.18241 1.19554 1.19733
0.93823 0.93733 0.89318 0.92009 0.91801 0.83645 0.84115 0.73976
0.84143 0.87487 0.84629 0.90357
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.35 16
2 O -0.38 -5.09 10.70 -35.23 -0.38 -5.47 16
3 C 0.08 0.99 5.95 37.16 0.22 1.21 16
4 C -0.64 -9.00 6.26 37.16 0.23 -8.77 16
5 S 2.61 42.35 5.23 -107.50 -0.56 41.79 16
6 O -0.97 -17.28 18.08 -57.54 -1.04 -18.32 16
7 O -0.95 -17.36 15.04 -57.54 -0.87 -18.23 16
8 N -1.02 -18.62 5.26 32.73 0.17 -18.45 16
9 C 0.02 0.41 6.15 -83.28 -0.51 -0.10 16
10 C -0.13 -2.61 9.24 -39.42 -0.36 -2.97 16
11 C -0.21 -4.31 9.81 -39.32 -0.39 -4.70 16
12 C -0.01 -0.28 6.27 -39.91 -0.25 -0.53 16
13 Cl -0.12 -2.36 28.93 -51.86 -1.50 -3.86 16
14 C -0.13 -3.10 8.35 -39.26 -0.33 -3.43 16
15 C 0.11 2.63 5.56 -106.64 -0.59 2.04 16
16 C -0.45 -10.34 8.34 -37.89 -0.32 -10.66 16
17 H 0.09 1.81 7.46 -52.48 -0.39 1.42 16
18 C 0.07 1.64 5.26 -17.33 -0.09 1.55 16
19 N -0.79 -18.42 10.86 55.55 0.60 -17.81 16
20 Si 0.91 17.01 29.57 -169.99 -5.03 11.99 16
21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16
22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16
23 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16
24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16
26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.15 2.12 8.14 -51.92 -0.42 1.70 16
30 H 0.14 1.87 8.14 -51.92 -0.42 1.44 16
31 H 0.42 7.39 8.14 -34.47 -0.28 7.11 16
32 H 0.14 2.77 5.17 -52.49 -0.27 2.50 16
33 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16
34 H 0.14 3.33 6.25 -52.49 -0.33 3.00 16
35 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16
LS Contribution 327.55 15.07 4.94 4.94
Total: -1.00 -28.14 327.55 -8.72 -36.86
By element:
Atomic # 1 Polarization: 15.34 SS G_CDS: -3.79 Total: 11.56 kcal
Atomic # 6 Polarization: -23.73 SS G_CDS: -1.27 Total: -25.01 kcal
Atomic # 7 Polarization: -37.04 SS G_CDS: 0.78 Total: -36.26 kcal
Atomic # 8 Polarization: -39.73 SS G_CDS: -2.28 Total: -42.01 kcal
Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.99 kcal
Atomic # 16 Polarization: 42.35 SS G_CDS: -0.56 Total: 41.79 kcal
Atomic # 17 Polarization: -2.36 SS G_CDS: -1.50 Total: -3.86 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -28.14 -8.72 -36.86 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000451058900.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.956 kcal
(2) G-P(sol) polarization free energy of solvation -28.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds